Wall clock time and date at job start Sat Apr 11 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99620 * 2 1 4 4 H 1.08998 * 109.47401 * 329.99715 * 3 2 1 5 5 C 1.53000 * 109.47152 * 90.00236 * 3 2 1 6 6 C 1.50702 * 109.46848 * 210.00109 * 3 2 1 7 7 N 1.28655 * 124.71683 * 134.99857 * 6 3 2 8 8 C 1.33561 * 115.76300 * 180.02562 * 7 6 3 9 9 C 1.47270 * 123.13861 * 180.02562 * 8 7 6 10 10 O 1.21638 * 119.99649 * 186.81997 * 9 8 7 11 11 N 1.34772 * 120.00045 * 6.81791 * 9 8 7 12 12 C 1.46497 * 119.99935 * 356.45569 * 11 9 8 13 13 C 1.46502 * 119.99799 * 176.45799 * 11 9 8 14 14 C 1.52992 * 109.47305 * 95.67329 * 13 11 9 15 15 H 1.09005 * 113.04308 * 65.68292 * 14 13 11 16 16 C 1.53946 * 113.77007 * 293.92923 * 14 13 11 17 17 C 1.53948 * 86.29183 * 222.09309 * 16 14 13 18 18 N 1.47587 * 86.24033 * 23.54868 * 17 16 14 19 19 C 1.36932 * 134.49344 * 155.42634 * 18 17 16 20 20 H 1.07998 * 120.00115 * 185.20925 * 19 18 17 21 21 C 1.38813 * 119.99958 * 5.20927 * 19 18 17 22 22 N 1.31621 * 120.00167 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00007 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47526 * 89.99698 * 23 21 19 25 25 H 1.48504 * 109.46687 * 209.99604 * 23 21 19 26 26 H 1.48500 * 109.47081 * 329.99207 * 23 21 19 27 27 C 1.35204 * 113.72104 * 0.27347 * 8 7 6 28 28 S 1.70765 * 124.72250 * 315.04362 * 6 3 2 29 29 H 1.09004 * 109.46924 * 299.99810 * 1 2 3 30 30 H 1.08997 * 109.47439 * 59.99782 * 1 2 3 31 31 H 1.09002 * 109.46605 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46737 * 299.99820 * 5 3 2 33 33 H 1.09005 * 109.46630 * 59.99829 * 5 3 2 34 34 H 1.09000 * 109.46742 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.47345 * 275.90578 * 12 11 9 36 36 H 1.08995 * 109.47608 * 35.90868 * 12 11 9 37 37 H 1.08999 * 109.47031 * 155.91360 * 12 11 9 38 38 H 1.09000 * 109.47017 * 335.66820 * 13 11 9 39 39 H 1.09004 * 109.46947 * 215.67219 * 13 11 9 40 40 H 1.09001 * 113.74397 * 107.74757 * 16 14 13 41 41 H 1.08997 * 113.83699 * 336.44869 * 16 14 13 42 42 H 1.08999 * 113.77094 * 137.90274 * 17 16 14 43 43 H 1.08999 * 113.77003 * 269.19244 * 17 16 14 44 44 H 0.96997 * 119.99963 * 179.97438 * 22 21 19 45 45 H 1.07995 * 125.59041 * 179.73755 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7105 7 7 3.7324 2.1277 -1.5789 8 6 4.9447 1.9173 -2.0984 9 6 5.5546 2.8037 -3.1039 10 8 6.6064 2.4934 -3.6302 11 7 4.9473 3.9587 -3.4410 12 6 3.6429 4.2956 -2.8654 13 6 5.5916 4.8772 -4.3830 14 6 5.0521 4.6240 -5.7921 15 1 3.9944 4.8671 -5.8941 16 6 5.4296 3.2449 -6.3625 17 6 5.7023 3.9788 -7.6880 18 7 5.8968 5.1888 -6.8656 19 6 6.5842 6.3614 -7.0313 20 1 6.6367 7.0755 -6.2227 21 6 7.2136 6.6324 -8.2385 22 7 7.1501 5.7620 -9.2237 23 14 8.1519 8.2318 -8.4643 24 1 9.5662 8.0381 -8.0550 25 1 8.1009 8.6382 -9.8917 26 1 7.5345 9.2905 -7.6258 27 6 5.5574 0.8115 -1.6190 28 16 4.5300 0.0634 -0.4757 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.2569 1.8014 1.9563 33 1 2.8830 1.0775 1.9562 34 1 2.6613 2.7670 1.4424 35 1 2.8547 3.8167 -3.4465 36 1 3.5989 3.9442 -1.8346 37 1 3.5045 5.3765 -2.8871 38 1 6.6691 4.7128 -4.3714 39 1 5.3778 5.9056 -4.0915 40 1 4.5941 2.5465 -6.4114 41 1 6.3210 2.8101 -5.9103 42 1 6.6058 3.6442 -8.1977 43 1 4.8362 4.0307 -8.3477 44 1 7.5896 5.9515 -10.0674 45 1 6.5365 0.4598 -1.9091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085595452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:20 Heat of formation + Delta-G solvation = 19.771031 kcal Electronic energy + Delta-G solvation = -27344.652885 eV Core-core repulsion = 23491.353307 eV Total energy + Delta-G solvation = -3853.299578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82908 -40.34624 -39.38797 -38.81957 -36.54568 -34.24390 -33.51894 -30.77557 -30.24583 -29.86130 -27.73197 -27.58073 -26.63928 -25.33514 -24.82536 -23.40936 -21.79268 -20.88472 -20.54758 -19.37655 -18.66664 -17.74471 -17.32317 -17.16249 -17.15518 -16.89595 -16.50296 -16.25660 -15.84245 -15.59376 -15.28436 -14.82890 -14.70001 -14.21583 -14.00327 -13.99689 -13.79987 -13.65496 -13.42004 -13.30832 -13.13299 -12.96176 -12.79919 -12.60241 -12.54894 -12.51628 -12.27228 -11.96655 -11.84608 -11.62767 -11.30961 -11.17921 -10.86795 -10.84997 -10.62221 -10.52822 -9.98981 -9.62073 -8.90600 -7.89992 -5.23530 -0.55176 0.22098 0.60962 0.82491 1.43553 1.47204 1.55059 1.93981 2.20368 2.39630 2.49930 3.21089 3.31170 3.40814 3.60869 3.85921 3.98299 4.09938 4.11784 4.19259 4.27307 4.29249 4.43290 4.44020 4.55073 4.59012 4.63354 4.67107 4.78043 4.81903 4.86868 4.90630 4.95860 4.98431 5.04184 5.16871 5.22747 5.26168 5.49580 5.54855 5.70610 5.92051 6.07787 6.25832 6.43305 6.90797 7.07713 7.60677 8.57735 9.28387 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023989 B = 0.002411 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.939517 B =11611.096656 C =11802.682760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.163 3.837 4 H 0.100 0.900 5 C -0.166 4.166 6 C 0.002 3.998 7 N -0.439 5.439 8 C -0.005 4.005 9 C 0.581 3.419 10 O -0.569 6.569 11 N -0.590 5.590 12 C 0.076 3.924 13 C 0.130 3.870 14 C 0.136 3.864 15 H 0.057 0.943 16 C -0.134 4.134 17 C 0.162 3.838 18 N -0.628 5.628 19 C -0.228 4.228 20 H 0.088 0.912 21 C -0.073 4.073 22 N -0.958 5.958 23 Si 0.981 3.019 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.264 1.264 27 C -0.242 4.242 28 S 0.318 5.682 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.020 0.980 44 H 0.247 0.753 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 -12.893 27.416 34.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.102 3.898 4 H 0.118 0.882 5 C -0.225 4.225 6 C -0.277 4.277 7 N -0.156 5.156 8 C -0.141 4.141 9 C 0.367 3.633 10 O -0.448 6.448 11 N -0.320 5.320 12 C -0.065 4.065 13 C 0.006 3.994 14 C 0.029 3.971 15 H 0.075 0.925 16 C -0.173 4.173 17 C 0.036 3.964 18 N -0.355 5.355 19 C -0.356 4.356 20 H 0.106 0.894 21 C -0.266 4.266 22 N -0.608 5.608 23 Si 0.809 3.191 24 H -0.215 1.215 25 H -0.221 1.221 26 H -0.188 1.188 27 C -0.384 4.384 28 S 0.576 5.424 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.038 0.962 44 H 0.056 0.944 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.351 -13.400 27.479 34.210 hybrid contribution 0.971 1.723 -1.874 2.725 sum -14.380 -11.678 25.605 31.603 Atomic orbital electron populations 1.23043 0.78287 1.04296 1.01359 1.87868 1.22270 1.26438 1.95256 1.20419 0.87179 0.86404 0.95752 0.88180 1.22299 1.04433 1.02367 0.93368 1.27463 1.03190 0.96718 1.00280 1.67169 1.12199 1.26944 1.09316 1.20093 0.92642 0.98243 1.03088 1.17550 0.83645 0.80978 0.81090 1.90810 1.24533 1.74028 1.55443 1.47652 1.21842 1.19138 1.43391 1.22435 0.81543 1.01222 1.01346 1.21485 0.97378 0.92634 0.87899 1.22672 0.94022 0.91240 0.89159 0.92538 1.23533 1.00610 0.95796 0.97314 1.22013 0.96890 0.84910 0.92558 1.46343 1.54904 1.16872 1.17334 1.19436 1.23768 0.94621 0.97825 0.89383 1.25715 1.03054 1.02077 0.95740 1.70048 1.49246 1.37141 1.04337 0.85043 0.78233 0.79195 0.76659 1.21498 1.22110 1.18816 1.26964 1.08019 0.99605 1.03860 1.82644 1.03428 1.24384 1.31927 0.91864 0.93397 0.88166 0.89199 0.91256 0.90611 0.92668 0.86937 0.90602 0.92125 0.89620 0.91609 0.91059 0.95009 0.96215 0.94373 0.79202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 113.37 1.23 1.40 16 2 O -0.40 -4.94 10.17 -148.98 -1.51 -6.45 16 3 C 0.16 1.93 3.23 29.85 0.10 2.02 16 4 H 0.10 1.06 7.79 -2.39 -0.02 1.04 16 5 C -0.17 -1.27 9.51 71.98 0.68 -0.58 16 6 C 0.00 0.03 6.30 88.57 0.56 0.59 16 7 N -0.44 -9.85 6.74 -180.83 -1.22 -11.06 16 8 C -0.01 -0.15 6.50 40.56 0.26 0.11 16 9 C 0.58 20.26 7.29 86.62 0.63 20.89 16 10 O -0.57 -24.13 14.51 -4.15 -0.06 -24.19 16 11 N -0.59 -19.23 2.80 -850.85 -2.38 -21.61 16 12 C 0.08 1.84 9.54 127.77 1.22 3.06 16 13 C 0.13 5.05 5.42 86.38 0.47 5.52 16 14 C 0.14 5.96 4.58 45.04 0.21 6.17 16 15 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 16 C -0.13 -6.04 7.25 31.25 0.23 -5.82 16 17 C 0.16 8.67 7.38 86.48 0.64 9.31 16 18 N -0.63 -34.60 3.58 -690.85 -2.48 -37.07 16 19 C -0.23 -13.37 10.52 84.03 0.88 -12.48 16 20 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 21 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 22 N -0.96 -61.35 11.52 21.65 0.25 -61.10 16 23 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 27 C -0.24 -5.44 10.62 67.12 0.71 -4.73 16 28 S 0.32 4.83 22.73 -56.49 -1.28 3.55 16 29 H 0.06 0.21 7.87 -2.38 -0.02 0.19 16 30 H 0.05 0.32 8.08 -2.39 -0.02 0.30 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.38 7.87 -2.39 -0.02 0.36 16 33 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.11 2.48 5.21 -2.39 -0.01 2.46 16 37 H 0.08 1.60 7.89 -2.39 -0.02 1.58 16 38 H 0.06 2.76 7.31 -2.39 -0.02 2.74 16 39 H 0.09 3.01 7.95 -2.39 -0.02 2.99 16 40 H 0.07 2.61 8.14 -2.39 -0.02 2.60 16 41 H 0.07 3.47 6.49 -2.39 -0.02 3.46 16 42 H 0.03 1.89 7.40 -2.39 -0.02 1.87 16 43 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.19 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -78.01 382.41 2.61 -75.39 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.99 Total: 11.30 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 8.28 Total: 21.53 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -5.83 Total: -130.86 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -1.58 Total: -30.65 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.28 Total: 3.55 kcal Total: -78.01 2.61 -75.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085595452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.163 kcal (2) G-P(sol) polarization free energy of solvation -78.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds