Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 114.00036 * 2 1 4 4 H 1.09004 * 109.47183 * 329.99599 * 3 2 1 5 5 C 1.52999 * 109.47040 * 90.00137 * 3 2 1 6 6 C 1.50700 * 109.46885 * 210.00260 * 3 2 1 7 7 N 1.28652 * 124.72196 * 135.00332 * 6 3 2 8 8 C 1.33555 * 115.76721 * 179.97438 * 7 6 3 9 9 C 1.47263 * 123.14010 * 179.97438 * 8 7 6 10 10 O 1.21636 * 119.99907 * 173.36712 * 9 8 7 11 11 N 1.34779 * 119.99986 * 353.36721 * 9 8 7 12 12 C 1.46493 * 120.00124 * 3.08902 * 11 9 8 13 13 C 1.46501 * 119.99726 * 183.08634 * 11 9 8 14 14 C 1.52998 * 109.47140 * 84.62141 * 13 11 9 15 15 H 1.08994 * 112.96494 * 293.03636 * 14 13 11 16 16 C 1.53947 * 113.77101 * 64.71473 * 14 13 11 17 17 C 1.53937 * 86.29393 * 137.90585 * 16 14 13 18 18 N 1.47581 * 113.77189 * 161.35511 * 14 13 11 19 19 C 1.36944 * 134.49154 * 41.06420 * 18 14 13 20 20 H 1.08000 * 119.99764 * 4.88546 * 19 18 14 21 21 C 1.38810 * 120.00197 * 184.88903 * 19 18 14 22 22 N 1.31617 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00202 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47272 * 59.99205 * 23 21 19 25 25 H 1.48500 * 109.47595 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46698 * 299.99510 * 23 21 19 27 27 C 1.35207 * 113.71801 * 359.97438 * 8 7 6 28 28 S 1.70773 * 124.72051 * 314.95803 * 6 3 2 29 29 H 1.08999 * 109.47022 * 300.00141 * 1 2 3 30 30 H 1.09001 * 109.47014 * 59.99529 * 1 2 3 31 31 H 1.08994 * 109.47108 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47101 * 59.99947 * 5 3 2 33 33 H 1.09002 * 109.46647 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.46941 * 300.00040 * 5 3 2 35 35 H 1.09000 * 109.47281 * 84.02407 * 12 11 9 36 36 H 1.09001 * 109.47402 * 204.02570 * 12 11 9 37 37 H 1.09004 * 109.47131 * 324.02087 * 12 11 9 38 38 H 1.09007 * 109.47214 * 204.61959 * 13 11 9 39 39 H 1.08999 * 109.47680 * 324.62107 * 13 11 9 40 40 H 1.08999 * 113.74006 * 252.25907 * 16 14 13 41 41 H 1.09009 * 113.74188 * 23.45380 * 16 14 13 42 42 H 1.08998 * 113.76901 * 90.69191 * 17 16 14 43 43 H 1.09003 * 113.77238 * 221.98243 * 17 16 14 44 44 H 0.96998 * 120.00756 * 179.97438 * 22 21 19 45 45 H 1.07994 * 125.58659 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2178 1.7713 1.4425 6 6 3.3387 1.2638 -0.7105 7 7 3.7326 2.1275 -1.5788 8 6 4.9453 1.9176 -2.0976 9 6 5.5549 2.8035 -3.1037 10 8 6.7080 2.6287 -3.4490 11 7 4.8351 3.8079 -3.6418 12 6 3.4690 4.0607 -3.1772 13 6 5.4189 4.6469 -4.6913 14 6 5.2305 3.9690 -6.0499 15 1 5.8041 3.0474 -6.1485 16 6 3.7576 3.8316 -6.4759 17 6 4.2286 4.2511 -7.8801 18 7 5.3757 4.8857 -7.1974 19 6 6.2294 5.9115 -7.5042 20 1 7.0578 6.1387 -6.8495 21 6 6.0300 6.6594 -8.6565 22 7 5.0207 6.3822 -9.4545 23 14 7.1949 8.0582 -9.0753 24 1 8.5731 7.5262 -9.2268 25 1 6.7677 8.6942 -10.3474 26 1 7.1704 9.0660 -7.9849 27 6 5.5609 0.8157 -1.6128 28 16 4.5309 0.0643 -0.4742 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.8830 1.0774 1.9563 33 1 2.6615 2.7669 1.4424 34 1 1.2569 1.8014 1.9563 35 1 3.4988 4.6813 -2.2816 36 1 2.9092 4.5759 -3.9578 37 1 2.9824 3.1129 -2.9465 38 1 4.9235 5.6178 -4.6979 39 1 6.4829 4.7832 -4.4978 40 1 3.3799 2.8104 -6.4265 41 1 3.0939 4.5536 -5.9999 42 1 4.5084 3.4129 -8.5183 43 1 3.5619 4.9579 -8.3743 44 1 4.8811 6.9050 -10.2595 45 1 6.5425 0.4675 -1.8982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085595453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = 42.506673 kcal Electronic energy + Delta-G solvation = -27306.807736 eV Core-core repulsion = 23454.494049 eV Total energy + Delta-G solvation = -3852.313687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.77217 -39.17299 -38.37949 -37.55701 -35.09513 -32.90583 -32.07812 -29.96926 -28.81375 -27.79408 -27.33201 -26.44234 -25.61953 -23.80350 -23.24784 -22.06687 -20.86818 -19.63337 -19.07634 -18.20450 -16.82877 -16.74493 -16.63389 -16.19424 -15.93043 -15.59840 -15.41692 -14.74977 -14.55261 -14.31194 -13.90421 -13.54038 -13.43187 -13.35930 -13.12294 -12.84114 -12.62232 -12.54082 -12.36282 -12.14965 -12.07248 -11.86341 -11.49492 -11.35359 -10.97128 -10.78392 -10.65353 -10.42726 -10.34588 -10.00937 -9.86731 -9.74577 -9.69092 -9.64713 -9.41375 -9.13545 -8.70642 -8.22011 -6.79299 -5.68585 -3.01819 0.30366 1.00033 1.43764 1.81569 2.91179 3.27972 3.41542 3.44681 3.48614 3.49999 3.93612 4.39678 4.52771 4.58678 4.64262 4.85264 4.94118 4.94928 5.08296 5.17890 5.25423 5.26019 5.26673 5.44063 5.50155 5.59536 5.63711 5.68269 5.79093 5.92315 6.04447 6.20276 6.29119 6.37433 6.53260 6.54515 6.72092 6.78582 6.90691 7.17906 7.32834 7.51923 7.65203 7.66895 8.06711 8.34205 9.12230 9.78658 10.69137 11.47661 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.002473 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.971770 B =11318.402413 C =11857.036961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.164 3.836 4 H 0.094 0.906 5 C -0.169 4.169 6 C 0.010 3.990 7 N -0.426 5.426 8 C 0.019 3.981 9 C 0.585 3.415 10 O -0.535 6.535 11 N -0.587 5.587 12 C 0.076 3.924 13 C 0.118 3.882 14 C 0.131 3.869 15 H 0.047 0.953 16 C -0.156 4.156 17 C 0.156 3.844 18 N -0.602 5.602 19 C -0.220 4.220 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.284 1.284 27 C -0.231 4.231 28 S 0.244 5.756 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.022 0.978 43 H 0.078 0.922 44 H 0.253 0.747 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.862 -13.759 24.334 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.103 3.897 4 H 0.112 0.888 5 C -0.228 4.228 6 C -0.269 4.269 7 N -0.144 5.144 8 C -0.116 4.116 9 C 0.369 3.631 10 O -0.412 6.412 11 N -0.317 5.317 12 C -0.068 4.068 13 C -0.005 4.005 14 C 0.023 3.977 15 H 0.064 0.936 16 C -0.195 4.195 17 C 0.031 3.969 18 N -0.328 5.328 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C -0.373 4.373 28 S 0.502 5.498 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.040 0.960 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.321 -14.148 24.400 30.034 hybrid contribution 0.921 1.553 -1.140 2.135 sum -9.400 -12.595 23.260 28.072 Atomic orbital electron populations 1.22861 0.79721 1.03340 1.00524 1.87906 1.20696 1.26380 1.95116 1.20280 0.88347 0.86114 0.94956 0.88771 1.22298 1.03325 1.02537 0.94619 1.26933 1.02165 0.97125 1.00648 1.67269 1.12612 1.26540 1.07944 1.20487 0.91078 0.97827 1.02243 1.17105 0.85294 0.80290 0.80381 1.90827 1.16576 1.71477 1.62315 1.47651 1.15442 1.31079 1.37571 1.22293 0.82069 1.03581 0.98819 1.21860 0.99354 0.93190 0.86135 1.22518 0.93962 0.93142 0.88085 0.93576 1.23740 0.96185 0.98992 1.00563 1.22300 0.88835 0.94358 0.91426 1.46048 1.36322 1.34138 1.16320 1.18985 1.05411 1.04499 1.05891 0.90462 1.24763 0.98598 0.99594 0.97482 1.69810 1.30644 1.41912 1.14543 0.86223 0.80221 0.82046 0.77421 1.21242 1.21627 1.21103 1.26743 1.07170 1.00127 1.03274 1.82861 1.05599 1.26398 1.34973 0.93559 0.93384 0.89084 0.91313 0.90614 0.90998 0.93159 0.91447 0.88296 0.89563 0.90639 0.93535 0.90908 0.96006 0.90416 0.93721 0.79258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.38 -2.91 10.17 -35.23 -0.36 -3.27 16 3 C 0.16 1.22 3.23 -27.88 -0.09 1.13 16 4 H 0.09 0.64 7.79 -51.93 -0.40 0.23 16 5 C -0.17 -0.94 9.51 37.16 0.35 -0.59 16 6 C 0.01 0.10 6.30 -13.61 -0.09 0.01 16 7 N -0.43 -5.20 6.75 -8.51 -0.06 -5.26 16 8 C 0.02 0.26 6.50 -84.53 -0.55 -0.28 16 9 C 0.58 10.24 7.61 -12.59 -0.10 10.14 16 10 O -0.53 -11.03 16.38 5.25 0.09 -10.94 16 11 N -0.59 -9.89 2.77 -182.91 -0.51 -10.40 16 12 C 0.08 1.02 9.18 59.84 0.55 1.57 16 13 C 0.12 2.32 5.27 -4.04 -0.02 2.30 16 14 C 0.13 2.90 4.54 -66.86 -0.30 2.60 16 15 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.16 -3.14 7.29 -25.80 -0.19 -3.33 16 17 C 0.16 3.85 7.65 -2.85 -0.02 3.83 16 18 N -0.60 -16.02 3.58 -169.75 -0.61 -16.63 16 19 C -0.22 -6.35 10.51 -15.06 -0.16 -6.51 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -27.91 11.32 55.49 0.63 -27.29 16 23 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 C -0.23 -2.71 10.62 29.65 0.31 -2.40 16 28 S 0.24 2.15 22.74 -107.50 -2.44 -0.29 16 29 H 0.05 0.15 7.87 -51.93 -0.41 -0.25 16 30 H 0.05 0.22 8.08 -51.93 -0.42 -0.20 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.29 7.87 -51.93 -0.41 -0.12 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.89 6.61 -51.93 -0.34 0.55 16 37 H 0.10 1.28 5.24 -51.93 -0.27 1.01 16 38 H 0.09 1.69 8.03 -51.93 -0.42 1.28 16 39 H 0.08 1.60 7.55 -51.93 -0.39 1.21 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.38 6.87 -51.92 -0.36 1.02 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 2.08 6.97 -51.93 -0.36 1.72 16 44 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 45 H 0.19 2.07 8.04 -52.49 -0.42 1.65 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -34.54 383.15 -8.52 -43.06 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.71 Total: -1.86 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 0.70 Total: 9.37 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.54 Total: -59.57 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.27 Total: -14.21 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.44 Total: -0.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.54 -8.52 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085595453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.572 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds