Wall clock time and date at job start Sat Apr 11 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99956 * 2 1 4 4 H 1.09002 * 109.47133 * 29.99975 * 3 2 1 5 5 C 1.52998 * 109.47121 * 269.99646 * 3 2 1 6 6 C 1.50707 * 109.47026 * 149.99883 * 3 2 1 7 7 N 1.29422 * 124.80671 * 45.02268 * 6 3 2 8 8 C 1.30939 * 117.36423 * 179.97438 * 7 6 3 9 9 C 1.35659 * 114.19338 * 359.97438 * 8 7 6 10 10 C 1.46680 * 126.13280 * 179.97438 * 9 8 7 11 11 O 1.21687 * 120.00195 * 162.33341 * 10 9 8 12 12 N 1.34777 * 120.00024 * 342.34230 * 10 9 8 13 13 C 1.46496 * 119.99995 * 2.28891 * 12 10 9 14 14 C 1.46502 * 119.99784 * 182.30031 * 12 10 9 15 15 C 1.52995 * 109.47377 * 84.79668 * 14 12 10 16 16 H 1.08994 * 112.96903 * 294.33092 * 15 14 12 17 17 C 1.53954 * 113.77010 * 66.01494 * 15 14 12 18 18 C 1.53938 * 86.29049 * 137.90653 * 17 15 14 19 19 N 1.47585 * 113.77037 * 162.65025 * 15 14 12 20 20 C 1.36938 * 134.48545 * 41.07418 * 19 15 14 21 21 H 1.07997 * 120.00817 * 4.92729 * 20 19 15 22 22 C 1.38822 * 119.99636 * 184.93212 * 20 19 15 23 23 N 1.31617 * 120.00054 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99752 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47370 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46823 * 119.99933 * 24 22 20 27 27 H 1.48500 * 109.46875 * 239.99449 * 24 22 20 28 28 S 1.70951 * 124.80084 * 224.99976 * 6 3 2 29 29 H 1.09000 * 109.47464 * 300.00417 * 1 2 3 30 30 H 1.09010 * 109.46891 * 60.00009 * 1 2 3 31 31 H 1.09000 * 109.46964 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47330 * 60.00125 * 5 3 2 33 33 H 1.08998 * 109.47042 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47385 * 300.00174 * 5 3 2 35 35 H 1.08003 * 122.90521 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.46734 * 84.58943 * 13 12 10 37 37 H 1.08997 * 109.47280 * 204.58622 * 13 12 10 38 38 H 1.08994 * 109.47570 * 324.59190 * 13 12 10 39 39 H 1.09010 * 109.46815 * 204.79686 * 14 12 10 40 40 H 1.09001 * 109.47342 * 324.79331 * 14 12 10 41 41 H 1.08998 * 113.73751 * 252.25540 * 17 15 14 42 42 H 1.08999 * 113.74115 * 23.45181 * 17 15 14 43 43 H 1.08995 * 113.77265 * 90.69472 * 18 17 15 44 44 H 1.08999 * 113.76864 * 221.97761 * 18 17 15 45 45 H 0.97000 * 120.00330 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3386 1.2639 0.7105 7 7 4.2432 0.3555 0.5329 8 6 5.3475 0.4617 1.2285 9 6 5.3828 1.5370 2.0549 10 6 6.4865 1.9057 2.9479 11 8 6.5555 3.0351 3.3957 12 7 7.4243 0.9938 3.2722 13 6 7.3695 -0.3509 2.6935 14 6 8.4984 1.3471 4.2038 15 6 8.0126 1.1494 5.6410 16 1 7.2101 1.8335 5.9167 17 6 7.7275 -0.3196 6.0031 18 6 8.4178 -0.0182 7.3457 19 7 9.1029 1.0808 6.6333 20 6 10.2766 1.7616 6.8180 21 1 10.5207 2.5995 6.1819 22 6 11.1528 1.3746 7.8228 23 7 10.8551 0.3537 8.5983 24 14 12.7542 2.3029 8.0742 25 1 12.8515 3.4008 7.0791 26 1 12.7860 2.8726 9.4452 27 1 13.8983 1.3728 7.8980 28 16 3.8641 2.4103 1.8646 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.2569 1.8014 -1.9564 33 1 2.6615 2.7669 -1.4425 34 1 2.8830 1.0774 -1.9563 35 1 6.1600 -0.2456 1.1512 36 1 7.8527 -0.3459 1.7165 37 1 7.8859 -1.0506 3.3506 38 1 6.3292 -0.6567 2.5827 39 1 9.3625 0.7083 4.0211 40 1 8.7796 2.3898 4.0555 41 1 6.6664 -0.5503 6.0972 42 1 8.2649 -1.0367 5.3826 43 1 7.7352 0.3232 8.1238 44 1 9.0859 -0.8104 7.6837 45 1 11.4671 0.0835 9.3007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085598266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:26 Heat of formation + Delta-G solvation = 51.206602 kcal Electronic energy + Delta-G solvation = -26937.928453 eV Core-core repulsion = 23085.992023 eV Total energy + Delta-G solvation = -3851.936430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.62511 -39.49356 -38.33891 -37.72015 -35.35708 -32.94465 -32.13588 -30.56823 -28.22818 -27.83427 -27.37393 -26.92107 -25.74937 -23.35293 -23.14424 -22.71525 -20.94098 -19.73181 -18.94837 -18.26720 -17.32646 -16.70772 -16.48779 -15.98212 -15.85017 -15.59266 -15.40338 -15.02855 -14.72724 -14.48732 -14.01401 -13.64154 -13.58858 -13.50209 -13.09939 -13.05772 -12.77308 -12.41666 -12.39099 -12.16407 -12.08925 -11.57876 -11.44491 -11.37470 -11.00693 -10.84411 -10.70719 -10.48310 -10.43089 -10.16238 -9.81794 -9.73052 -9.67498 -9.66255 -9.55286 -9.17196 -8.76250 -8.44000 -6.84824 -5.73423 -3.06987 0.01593 0.82952 1.38577 2.28900 3.04236 3.15633 3.36824 3.40443 3.46543 3.48662 3.69501 4.28415 4.44370 4.50259 4.58344 4.71116 4.86323 4.93577 4.95277 5.01519 5.15768 5.19669 5.26908 5.28293 5.28761 5.44712 5.55650 5.64101 5.67884 5.76382 5.81779 5.94407 6.17273 6.25472 6.41597 6.55443 6.62662 6.71013 6.80112 7.26916 7.38034 7.40879 7.47847 7.62096 8.01750 8.15413 9.07453 9.73878 10.63293 11.42768 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029012 B = 0.002249 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.876253 B =12445.854885 C =12746.780041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.026 3.974 7 N -0.450 5.450 8 C 0.064 3.936 9 C -0.278 4.278 10 C 0.586 3.414 11 O -0.531 6.531 12 N -0.589 5.589 13 C 0.055 3.945 14 C 0.120 3.880 15 C 0.130 3.870 16 H 0.047 0.953 17 C -0.158 4.158 18 C 0.156 3.844 19 N -0.602 5.602 20 C -0.220 4.220 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 S 0.233 5.767 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.203 0.797 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.023 0.977 44 H 0.078 0.922 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.280 -1.647 -20.068 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.249 4.249 7 N -0.164 5.164 8 C -0.094 4.094 9 C -0.402 4.402 10 C 0.372 3.628 11 O -0.409 6.409 12 N -0.322 5.322 13 C -0.088 4.088 14 C -0.003 4.003 15 C 0.022 3.978 16 H 0.065 0.935 17 C -0.197 4.197 18 C 0.031 3.969 19 N -0.328 5.328 20 C -0.348 4.348 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 S 0.491 5.509 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.219 0.781 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.041 0.959 44 H 0.097 0.903 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.386 -0.631 -19.586 28.277 hybrid contribution 1.393 0.055 0.279 1.422 sum -18.993 -0.577 -19.306 27.089 Atomic orbital electron populations 1.22898 0.80590 1.03373 1.00145 1.88095 1.19643 1.25569 1.94923 1.20462 0.87386 0.86360 0.95264 0.90023 1.22264 1.03326 1.02258 0.94831 1.27314 1.00437 0.96354 1.00807 1.66120 1.00840 1.25385 1.24054 1.23307 0.96717 0.96815 0.92512 1.25886 1.02191 1.03056 1.09096 1.16735 0.80848 0.85022 0.80174 1.90867 1.75702 1.19678 1.54659 1.47579 1.27371 1.12082 1.45131 1.22512 1.03141 0.84040 0.99081 1.21910 0.87673 1.02199 0.88543 1.22527 0.91489 0.94687 0.89090 0.93509 1.23763 0.98508 0.96496 1.00894 1.22301 0.92205 0.91344 0.91095 1.46070 1.17604 1.41379 1.27771 1.19070 0.92394 1.09435 1.13900 0.90330 1.24780 0.98710 0.98542 0.98423 1.69829 1.36790 1.28232 1.21908 0.86071 0.83370 0.78875 0.77628 1.20426 1.21802 1.21731 1.84021 1.07451 1.25679 1.33749 0.93746 0.93704 0.89077 0.91176 0.91105 0.90565 0.78088 0.91913 0.89545 0.90002 0.89303 0.90309 0.93412 0.90880 0.95936 0.90346 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.42 10.32 -35.23 -0.36 -3.78 16 3 C 0.17 1.35 3.23 -27.88 -0.09 1.26 16 4 H 0.08 0.47 7.78 -51.93 -0.40 0.06 16 5 C -0.17 -1.10 9.51 37.16 0.35 -0.74 16 6 C 0.03 0.28 6.28 -13.29 -0.08 0.19 16 7 N -0.45 -5.44 10.49 -11.50 -0.12 -5.56 16 8 C 0.06 0.73 9.29 -18.85 -0.18 0.56 16 9 C -0.28 -3.66 6.24 -37.10 -0.23 -3.90 16 10 C 0.59 9.47 7.61 -12.85 -0.10 9.38 16 11 O -0.53 -10.57 16.66 5.20 0.09 -10.48 16 12 N -0.59 -8.78 2.79 -183.13 -0.51 -9.29 16 13 C 0.06 0.58 8.49 59.84 0.51 1.09 16 14 C 0.12 2.18 5.25 -4.04 -0.02 2.16 16 15 C 0.13 2.74 4.54 -66.86 -0.30 2.44 16 16 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.16 -3.00 7.30 -25.79 -0.19 -3.19 16 18 C 0.16 3.72 7.65 -2.86 -0.02 3.70 16 19 N -0.60 -15.52 3.58 -169.75 -0.61 -16.13 16 20 C -0.22 -6.20 10.51 -15.05 -0.16 -6.36 16 21 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -27.42 11.32 55.49 0.63 -26.79 16 24 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 S 0.23 2.59 23.06 -107.50 -2.48 0.11 16 29 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 30 H 0.04 0.18 7.87 -51.92 -0.41 -0.23 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.20 1.83 4.37 -52.48 -0.23 1.60 16 36 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 37 H 0.09 0.89 6.64 -51.93 -0.34 0.55 16 38 H 0.08 0.77 5.06 -51.93 -0.26 0.51 16 39 H 0.09 1.59 8.03 -51.92 -0.42 1.17 16 40 H 0.08 1.58 7.55 -51.93 -0.39 1.19 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.28 6.95 -51.93 -0.36 0.92 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 2.04 6.97 -51.93 -0.36 1.68 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -35.22 380.92 -8.64 -43.86 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.48 Total: -2.54 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 0.49 Total: 7.49 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.61 Total: -57.77 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.28 Total: -14.26 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.48 Total: 0.11 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.22 -8.64 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085598266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.068 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds