Wall clock time and date at job start Sat Apr 11 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00000 * 2 1 4 4 H 1.08998 * 109.46761 * 30.00589 * 3 2 1 5 5 C 1.52995 * 109.47336 * 270.00339 * 3 2 1 6 6 C 1.50700 * 109.46799 * 150.00138 * 3 2 1 7 7 N 1.29429 * 124.80613 * 45.03150 * 6 3 2 8 8 C 1.30942 * 117.36606 * 179.97438 * 7 6 3 9 9 C 1.35660 * 114.18846 * 359.97438 * 8 7 6 10 10 C 1.46690 * 126.12497 * 180.02562 * 9 8 7 11 11 O 1.21684 * 119.99974 * 352.47991 * 10 9 8 12 12 N 1.34780 * 119.99608 * 172.48167 * 10 9 8 13 13 C 1.46498 * 120.00249 * 1.14995 * 12 10 9 14 14 C 1.46497 * 119.99595 * 181.15311 * 12 10 9 15 15 C 1.52996 * 109.47454 * 95.70505 * 14 12 10 16 16 H 1.08999 * 112.97090 * 63.71923 * 15 14 12 17 17 C 1.53950 * 113.76324 * 292.04845 * 15 14 12 18 18 C 1.53949 * 86.29043 * 222.08937 * 17 15 14 19 19 N 1.47585 * 113.77021 * 195.55752 * 15 14 12 20 20 C 1.36928 * 134.49253 * 318.93340 * 19 15 14 21 21 H 1.08008 * 119.99875 * 6.44478 * 20 19 15 22 22 C 1.38818 * 120.00256 * 186.44824 * 20 19 15 23 23 N 1.31619 * 119.99791 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99952 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47174 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47033 * 119.99775 * 24 22 20 27 27 H 1.48501 * 109.46965 * 239.99622 * 24 22 20 28 28 S 1.70957 * 124.80561 * 225.00057 * 6 3 2 29 29 H 1.08997 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46818 * 299.99414 * 1 2 3 31 31 H 1.08996 * 109.47355 * 59.99313 * 1 2 3 32 32 H 1.08998 * 109.47400 * 299.99859 * 5 3 2 33 33 H 1.08994 * 109.47156 * 60.00153 * 5 3 2 34 34 H 1.09002 * 109.46826 * 179.97438 * 5 3 2 35 35 H 1.08002 * 122.90452 * 179.72741 * 8 7 6 36 36 H 1.08999 * 109.47237 * 83.49007 * 13 12 10 37 37 H 1.08995 * 109.47252 * 203.49091 * 13 12 10 38 38 H 1.09003 * 109.47400 * 323.49076 * 13 12 10 39 39 H 1.09006 * 109.46584 * 215.69783 * 14 12 10 40 40 H 1.08994 * 109.47543 * 335.69477 * 14 12 10 41 41 H 1.08997 * 113.74741 * 336.43308 * 17 15 14 42 42 H 1.09004 * 113.74544 * 107.64143 * 17 15 14 43 43 H 1.09003 * 113.76771 * 137.90558 * 18 17 15 44 44 H 1.08995 * 113.77167 * 269.19408 * 18 17 15 45 45 H 0.96991 * 119.99798 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7714 -1.4424 6 6 3.3387 1.2638 0.7104 7 7 4.2433 0.3554 0.5326 8 6 5.3476 0.4615 1.2282 9 6 5.3828 1.5367 2.0548 10 6 6.4871 1.9058 2.9470 11 8 7.4295 1.1500 3.0936 12 7 6.4579 3.0820 3.6044 13 6 5.3116 3.9806 3.4474 14 6 7.5725 3.4619 4.4758 15 6 8.5448 4.3536 3.7010 16 1 8.1001 5.2994 3.3916 17 6 9.2932 3.6213 2.5724 18 6 10.5441 4.3863 3.0414 19 7 9.8642 4.4967 4.3467 20 6 10.2874 4.6646 5.6380 21 1 9.5773 4.6122 6.4502 22 6 11.6291 4.9022 5.9034 23 7 12.4945 4.9656 4.9137 24 14 12.2066 5.1305 7.6652 25 1 11.0468 5.0137 8.5853 26 1 13.2091 4.0864 7.9967 27 1 12.8227 6.4734 7.8140 28 16 3.8644 2.4101 1.8646 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.8829 1.0776 -1.9564 33 1 1.2568 1.8016 -1.9562 34 1 2.6606 2.7674 -1.4423 35 1 6.1585 -0.2480 1.1535 36 1 4.5146 3.6747 4.1251 37 1 5.6152 5.0011 3.6809 38 1 4.9520 3.9348 2.4195 39 1 7.1895 4.0063 5.3391 40 1 8.0920 2.5651 4.8132 41 1 9.3585 2.5429 2.7167 42 1 8.9576 3.8966 1.5725 43 1 11.4477 3.7771 3.0670 44 1 10.6894 5.3418 2.5375 45 1 13.4320 5.1312 5.0992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085598267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:29 Heat of formation + Delta-G solvation = 38.290807 kcal Electronic energy + Delta-G solvation = -27047.931330 eV Core-core repulsion = 23195.434829 eV Total energy + Delta-G solvation = -3852.496501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37432 -39.60410 -38.33605 -37.60793 -35.40297 -32.86538 -32.14622 -30.36824 -28.48846 -27.79942 -27.31677 -26.87058 -25.78621 -23.46428 -23.21551 -22.52043 -20.90659 -19.13161 -18.95811 -18.58904 -17.11233 -16.69517 -16.65394 -16.26766 -15.84793 -15.65436 -15.51755 -14.85863 -14.66132 -14.42243 -13.96861 -13.71170 -13.63429 -13.46492 -13.19874 -13.15225 -12.89208 -12.70402 -12.31954 -12.18802 -12.13237 -11.66486 -11.45674 -11.39259 -11.04348 -10.91021 -10.68872 -10.40965 -10.36031 -9.98940 -9.86184 -9.71234 -9.67406 -9.59584 -9.46609 -9.12942 -8.77049 -8.42421 -6.83457 -5.73928 -3.05977 0.04235 0.90146 1.32887 2.34676 2.93262 3.19108 3.39973 3.40595 3.45310 3.48278 3.74070 4.30359 4.42577 4.49580 4.60297 4.80336 4.83105 4.86975 4.93100 5.09698 5.11590 5.17853 5.23308 5.27696 5.31461 5.43519 5.46281 5.56694 5.73981 5.85918 5.91522 5.94386 6.08323 6.37235 6.48476 6.63213 6.64504 6.75995 6.80706 7.29789 7.32821 7.50629 7.53656 7.63922 8.01630 8.15725 9.07434 9.74079 10.64849 11.43845 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032313 B = 0.002273 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.312168 B =12315.609460 C =12467.278925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.166 3.834 4 H 0.081 0.919 5 C -0.169 4.169 6 C 0.016 3.984 7 N -0.454 5.454 8 C 0.116 3.884 9 C -0.280 4.280 10 C 0.590 3.410 11 O -0.511 6.511 12 N -0.602 5.602 13 C 0.066 3.934 14 C 0.117 3.883 15 C 0.127 3.873 16 H 0.042 0.958 17 C -0.159 4.159 18 C 0.166 3.834 19 N -0.599 5.599 20 C -0.223 4.223 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.918 5.918 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 S 0.198 5.802 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.189 0.811 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.027 0.973 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.719 -3.757 -10.820 29.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.105 3.895 4 H 0.098 0.902 5 C -0.227 4.227 6 C -0.259 4.259 7 N -0.167 5.167 8 C -0.042 4.042 9 C -0.404 4.404 10 C 0.376 3.624 11 O -0.388 6.388 12 N -0.335 5.335 13 C -0.080 4.080 14 C -0.006 4.006 15 C 0.019 3.981 16 H 0.059 0.941 17 C -0.198 4.198 18 C 0.040 3.960 19 N -0.326 5.326 20 C -0.351 4.351 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.565 5.565 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 S 0.456 5.544 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.206 0.794 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -26.449 -3.783 -10.420 28.678 hybrid contribution 0.788 0.039 0.822 1.139 sum -25.661 -3.744 -9.598 27.652 Atomic orbital electron populations 1.22886 0.80705 1.03313 1.00082 1.88106 1.19555 1.25724 1.94924 1.20482 0.87561 0.86207 0.95293 0.90153 1.22265 1.03270 1.02266 0.94950 1.27781 0.99917 0.96583 1.01617 1.66204 1.00768 1.25439 1.24327 1.22246 0.95515 0.95872 0.90528 1.25951 1.00616 1.03900 1.09966 1.16739 0.84477 0.81720 0.79492 1.90877 1.33944 1.50556 1.63441 1.47643 1.20995 1.18024 1.46810 1.22023 0.88884 0.96249 1.00799 1.21928 0.86047 1.01089 0.91494 1.22515 0.88686 0.94764 0.92132 0.94108 1.23836 0.99275 1.00949 0.95704 1.22094 0.94486 0.95541 0.83833 1.45977 0.99400 1.85075 1.02125 1.19020 0.92441 1.42004 0.81637 0.90323 1.24820 0.96100 1.02038 0.97453 1.69848 1.02054 1.55186 1.29433 0.86086 0.78541 0.77376 0.83988 1.20473 1.21704 1.21814 1.84290 1.08886 1.25027 1.36190 0.89154 0.93825 0.93713 0.90580 0.91278 0.91105 0.79417 0.91643 0.88586 0.91375 0.90939 0.88450 0.89669 0.93925 0.91647 0.95558 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.51 10.32 -35.23 -0.36 -3.87 16 3 C 0.17 1.33 3.23 -27.89 -0.09 1.24 16 4 H 0.08 0.43 7.78 -51.93 -0.40 0.02 16 5 C -0.17 -1.13 9.51 37.16 0.35 -0.78 16 6 C 0.02 0.16 6.28 -13.29 -0.08 0.08 16 7 N -0.45 -5.90 10.49 -11.50 -0.12 -6.02 16 8 C 0.12 1.53 11.10 -18.85 -0.21 1.32 16 9 C -0.28 -3.65 6.26 -37.09 -0.23 -3.88 16 10 C 0.59 9.34 7.29 -12.85 -0.09 9.25 16 11 O -0.51 -9.99 15.00 5.20 0.08 -9.91 16 12 N -0.60 -8.70 2.82 -183.13 -0.52 -9.22 16 13 C 0.07 0.65 9.00 59.85 0.54 1.19 16 14 C 0.12 2.07 5.36 -4.05 -0.02 2.05 16 15 C 0.13 2.59 4.56 -66.86 -0.31 2.28 16 16 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.16 -3.30 7.34 -25.80 -0.19 -3.49 16 18 C 0.17 4.10 7.37 -2.97 -0.02 4.08 16 19 N -0.60 -15.48 3.57 -170.72 -0.61 -16.09 16 20 C -0.22 -6.24 10.51 -15.06 -0.16 -6.40 16 21 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.79 11.56 55.49 0.64 -27.14 16 24 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 S 0.20 1.79 18.10 -107.50 -1.95 -0.15 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 31 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 36 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 37 H 0.10 0.85 8.02 -51.93 -0.42 0.44 16 38 H 0.07 0.60 4.48 -22.75 -0.10 0.50 16 39 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 40 H 0.10 2.02 7.24 -51.93 -0.38 1.64 16 41 H 0.08 1.89 6.81 -51.93 -0.35 1.54 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.78 7.46 -51.93 -0.39 1.39 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -35.25 381.53 -8.24 -43.48 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.61 Total: -2.00 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 0.48 Total: 7.87 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.60 Total: -58.48 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.29 Total: -13.78 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.95 Total: -0.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.25 -8.24 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085598267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.775 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds