Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00223 * 2 1 4 4 H 1.09006 * 109.47092 * 330.00234 * 3 2 1 5 5 C 1.53001 * 109.47276 * 89.99706 * 3 2 1 6 6 C 1.50697 * 109.47563 * 210.00394 * 3 2 1 7 7 N 1.29432 * 124.79951 * 315.04022 * 6 3 2 8 8 C 1.30943 * 117.36116 * 179.69942 * 7 6 3 9 9 C 1.35659 * 114.19289 * 0.47756 * 8 7 6 10 10 C 1.46684 * 126.13403 * 179.82688 * 9 8 7 11 11 O 1.21682 * 119.99686 * 5.64824 * 10 9 8 12 12 N 1.34782 * 120.00218 * 185.64633 * 10 9 8 13 13 C 1.46504 * 119.99812 * 5.15524 * 12 10 9 14 14 C 1.46495 * 119.99946 * 185.15558 * 12 10 9 15 15 C 1.52997 * 109.47090 * 96.41161 * 14 12 10 16 16 H 1.08998 * 112.96879 * 72.20984 * 15 14 12 17 17 C 1.53950 * 113.77185 * 300.52930 * 15 14 12 18 18 C 1.53941 * 86.29101 * 222.09286 * 17 15 14 19 19 N 1.47580 * 86.24081 * 23.55193 * 18 17 15 20 20 C 1.36943 * 134.49079 * 155.42679 * 19 18 17 21 21 H 1.07997 * 119.99696 * 186.47215 * 20 19 18 22 22 C 1.38805 * 120.00075 * 6.47233 * 20 19 18 23 23 N 1.31621 * 120.00191 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00141 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46767 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46974 * 120.00093 * 24 22 20 27 27 H 1.48499 * 109.47054 * 240.00247 * 24 22 20 28 28 S 1.70951 * 124.80850 * 135.00083 * 6 3 2 29 29 H 1.09000 * 109.46671 * 59.99763 * 1 2 3 30 30 H 1.08998 * 109.46736 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46801 * 299.99665 * 1 2 3 32 32 H 1.09006 * 109.46629 * 60.00245 * 5 3 2 33 33 H 1.08996 * 109.47375 * 180.02562 * 5 3 2 34 34 H 1.08998 * 109.46993 * 300.00511 * 5 3 2 35 35 H 1.07997 * 122.90927 * 180.30860 * 8 7 6 36 36 H 1.09000 * 109.46844 * 275.76103 * 13 12 10 37 37 H 1.09005 * 109.46935 * 35.76624 * 13 12 10 38 38 H 1.09001 * 109.47007 * 155.76249 * 13 12 10 39 39 H 1.09004 * 109.47413 * 336.40753 * 14 12 10 40 40 H 1.09004 * 109.47050 * 216.41290 * 14 12 10 41 41 H 1.08996 * 113.74281 * 107.74406 * 17 15 14 42 42 H 1.09001 * 113.83409 * 336.45579 * 17 15 14 43 43 H 1.08998 * 113.76673 * 137.90891 * 18 17 15 44 44 H 1.08999 * 113.77006 * 269.19129 * 18 17 15 45 45 H 0.96996 * 120.00271 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3387 1.2639 -0.7105 7 7 4.2428 0.3548 -0.5337 8 6 5.3444 0.4575 -1.2340 9 6 5.3819 1.5356 -2.0566 10 6 6.4852 1.9038 -2.9503 11 8 7.4402 1.1603 -3.0760 12 7 6.4411 3.0655 -3.6322 13 6 5.3482 4.0122 -3.3965 14 6 7.4861 3.3815 -4.6091 15 6 7.0067 2.9984 -6.0106 16 1 6.2380 3.6685 -6.3952 17 6 6.6609 1.5058 -6.1617 18 6 7.3774 1.5802 -7.5222 19 7 8.1036 2.7388 -6.9669 20 6 9.3088 3.3328 -7.2315 21 1 9.6680 4.1307 -6.5987 22 6 10.0686 2.9092 -8.3132 23 7 9.6310 1.9363 -9.0842 24 14 11.7130 3.7189 -8.6738 25 1 11.9749 4.7776 -7.6660 26 1 12.7907 2.6991 -8.6130 27 1 11.6800 4.3240 -10.0295 28 16 3.8643 2.4104 -1.8645 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.8830 1.0774 1.9563 33 1 2.6607 2.7673 1.4425 34 1 1.2569 1.8014 1.9563 35 1 6.1545 -0.2531 -1.1611 36 1 4.4869 3.7310 -4.0024 37 1 5.0724 3.9936 -2.3421 38 1 5.6722 5.0165 -3.6696 39 1 8.3898 2.8217 -4.3684 40 1 7.7014 4.4497 -4.5781 41 1 5.5917 1.3088 -6.2390 42 1 7.1602 0.8625 -5.4372 43 1 8.0149 0.7210 -7.7305 44 1 6.7181 1.8320 -8.3528 45 1 10.1617 1.6406 -9.8402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085598268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = 38.017907 kcal Electronic energy + Delta-G solvation = -27134.855484 eV Core-core repulsion = 23282.347150 eV Total energy + Delta-G solvation = -3852.508334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.37366 -39.60303 -38.32573 -37.57678 -35.37792 -32.86064 -32.13259 -30.35596 -28.48412 -27.79475 -27.30399 -26.85003 -25.77983 -23.45791 -23.22372 -22.52450 -20.89784 -19.10613 -18.96116 -18.57506 -17.10877 -16.66441 -16.62495 -16.16034 -15.92628 -15.68591 -15.47619 -14.86224 -14.60733 -14.45894 -13.95171 -13.68081 -13.61078 -13.45882 -13.22072 -13.13130 -12.88731 -12.69732 -12.38717 -12.14825 -12.07543 -11.67274 -11.44949 -11.38565 -11.03108 -10.90318 -10.68323 -10.41830 -10.35238 -9.99563 -9.86588 -9.68994 -9.63631 -9.59608 -9.45857 -9.14538 -8.76632 -8.42273 -6.82401 -5.72687 -3.04643 0.04554 0.91040 1.34122 2.34996 2.94969 3.19747 3.40956 3.41656 3.46372 3.49307 3.74246 4.30983 4.44414 4.50637 4.60118 4.80392 4.84026 4.88050 4.95270 5.11505 5.16023 5.17254 5.22697 5.29437 5.30805 5.43387 5.46623 5.55939 5.72300 5.85231 5.90609 5.94376 6.08877 6.35890 6.49841 6.63456 6.65890 6.75500 6.79229 7.29662 7.33735 7.50521 7.53877 7.64510 8.02558 8.17077 9.08584 9.75181 10.65822 11.45135 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029265 B = 0.002350 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.541669 B =11913.710476 C =12058.728089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.166 3.834 4 H 0.081 0.919 5 C -0.168 4.168 6 C 0.018 3.982 7 N -0.453 5.453 8 C 0.115 3.885 9 C -0.280 4.280 10 C 0.591 3.409 11 O -0.511 6.511 12 N -0.602 5.602 13 C 0.064 3.936 14 C 0.116 3.884 15 C 0.127 3.873 16 H 0.043 0.957 17 C -0.161 4.161 18 C 0.167 3.833 19 N -0.599 5.599 20 C -0.222 4.222 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.291 1.291 28 S 0.198 5.802 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.189 0.811 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.027 0.973 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.812 3.268 19.946 29.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.104 3.896 4 H 0.099 0.901 5 C -0.227 4.227 6 C -0.257 4.257 7 N -0.167 5.167 8 C -0.043 4.043 9 C -0.404 4.404 10 C 0.377 3.623 11 O -0.388 6.388 12 N -0.335 5.335 13 C -0.081 4.081 14 C -0.007 4.007 15 C 0.019 3.981 16 H 0.060 0.940 17 C -0.199 4.199 18 C 0.041 3.959 19 N -0.326 5.326 20 C -0.350 4.350 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 S 0.456 5.544 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.206 0.794 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.468 3.249 19.636 28.550 hybrid contribution 1.202 0.158 -0.373 1.268 sum -19.266 3.407 19.264 27.457 Atomic orbital electron populations 1.22891 0.80658 1.03358 1.00082 1.88109 1.19595 1.25655 1.94914 1.20478 0.87551 0.86289 0.95241 0.90114 1.22262 1.03265 1.02177 0.94990 1.27695 0.99987 0.96725 1.01267 1.66196 1.00826 1.25306 1.24362 1.22245 0.95551 0.95868 0.90604 1.25957 1.00644 1.03923 1.09846 1.16711 0.84678 0.81623 0.79299 1.90887 1.32886 1.50473 1.64534 1.47606 1.27076 1.18176 1.40619 1.21994 0.90536 0.94873 1.00715 1.21954 0.90371 1.00755 0.87637 1.22569 0.91118 0.94983 0.89439 0.93954 1.23812 0.98220 0.96679 1.01231 1.22072 0.91417 0.91273 0.91102 1.46011 1.14724 1.32688 1.39167 1.19016 0.92494 1.14784 1.08682 0.90311 1.24813 0.99095 0.99219 0.97285 1.69849 1.38160 1.29858 1.18710 0.86084 0.83619 0.78549 0.77735 1.20467 1.21707 1.21819 1.84253 1.08988 1.25267 1.35917 0.93758 0.89120 0.93750 0.90608 0.91169 0.91270 0.79422 0.91573 0.91273 0.88836 0.88244 0.91110 0.93879 0.89869 0.91678 0.95547 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.25 16 2 O -0.36 -3.58 10.32 -35.23 -0.36 -3.94 16 3 C 0.17 1.34 3.23 -27.88 -0.09 1.25 16 4 H 0.08 0.44 7.78 -51.93 -0.40 0.04 16 5 C -0.17 -1.10 9.51 37.16 0.35 -0.74 16 6 C 0.02 0.19 6.28 -13.29 -0.08 0.11 16 7 N -0.45 -5.93 10.49 -11.50 -0.12 -6.05 16 8 C 0.11 1.53 11.10 -18.85 -0.21 1.32 16 9 C -0.28 -3.69 6.23 -37.10 -0.23 -3.92 16 10 C 0.59 9.48 6.99 -12.85 -0.09 9.39 16 11 O -0.51 -10.20 15.08 5.20 0.08 -10.12 16 12 N -0.60 -8.74 2.72 -183.12 -0.50 -9.24 16 13 C 0.06 0.63 8.90 59.85 0.53 1.16 16 14 C 0.12 2.05 5.53 -4.05 -0.02 2.03 16 15 C 0.13 2.59 4.62 -66.74 -0.31 2.28 16 16 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.16 -3.34 7.18 -25.79 -0.19 -3.53 16 18 C 0.17 4.15 7.36 -2.98 -0.02 4.12 16 19 N -0.60 -15.60 3.58 -169.75 -0.61 -16.21 16 20 C -0.22 -6.25 10.52 -15.06 -0.16 -6.41 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.96 11.56 55.49 0.64 -27.32 16 24 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 S 0.20 1.82 18.08 -107.50 -1.94 -0.12 16 29 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 35 H 0.19 2.41 8.06 -52.49 -0.42 1.98 16 36 H 0.07 0.59 7.61 -51.93 -0.40 0.19 16 37 H 0.07 0.57 5.00 -26.79 -0.13 0.44 16 38 H 0.09 0.76 7.90 -51.93 -0.41 0.35 16 39 H 0.10 2.09 7.18 -51.93 -0.37 1.72 16 40 H 0.07 1.13 7.96 -51.93 -0.41 0.71 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.86 6.64 -51.93 -0.34 1.51 16 43 H 0.06 1.79 7.47 -51.93 -0.39 1.40 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -35.64 380.88 -8.22 -43.86 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.60 Total: -2.06 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 0.48 Total: 8.00 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.58 Total: -58.81 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.28 Total: -14.06 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.94 Total: -0.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.64 -8.22 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085598268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.878 kcal (2) G-P(sol) polarization free energy of solvation -35.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds