Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99524 * 2 1 4 4 H 1.08994 * 109.47451 * 330.00262 * 3 2 1 5 5 C 1.53005 * 109.46898 * 90.00210 * 3 2 1 6 6 C 1.50700 * 109.46812 * 209.99784 * 3 2 1 7 7 N 1.29430 * 124.80928 * 315.03055 * 6 3 2 8 8 C 1.30937 * 117.36383 * 179.97438 * 7 6 3 9 9 C 1.35665 * 114.19522 * 359.97438 * 8 7 6 10 10 C 1.46678 * 126.12975 * 180.02562 * 9 8 7 11 11 O 1.21685 * 119.99922 * 162.07485 * 10 9 8 12 12 N 1.34778 * 120.00046 * 342.06822 * 10 9 8 13 13 C 1.46490 * 120.00185 * 4.11222 * 12 10 9 14 14 C 1.46499 * 119.99815 * 184.11186 * 12 10 9 15 15 C 1.53008 * 109.47174 * 264.13712 * 14 12 10 16 16 H 1.09004 * 112.95918 * 290.72125 * 15 14 12 17 17 C 1.53945 * 113.77057 * 62.39745 * 15 14 12 18 18 C 1.53939 * 86.28973 * 137.91135 * 17 15 14 19 19 N 1.47573 * 113.77067 * 159.04323 * 15 14 12 20 20 C 1.36939 * 134.49265 * 41.06881 * 19 15 14 21 21 H 1.07999 * 120.00222 * 4.61986 * 20 19 15 22 22 C 1.38818 * 119.99940 * 184.62047 * 20 19 15 23 23 N 1.31623 * 119.99702 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99928 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47298 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47449 * 120.00305 * 24 22 20 27 27 H 1.48505 * 109.47246 * 239.99939 * 24 22 20 28 28 S 1.70961 * 124.80199 * 135.30338 * 6 3 2 29 29 H 1.09001 * 109.46663 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47425 * 299.99550 * 1 2 3 31 31 H 1.08997 * 109.47313 * 60.00039 * 1 2 3 32 32 H 1.09000 * 109.47212 * 299.99763 * 5 3 2 33 33 H 1.09004 * 109.47154 * 59.99884 * 5 3 2 34 34 H 1.09004 * 109.46678 * 179.97438 * 5 3 2 35 35 H 1.08002 * 122.90188 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.47682 * 84.12169 * 13 12 10 37 37 H 1.09001 * 109.47075 * 324.12627 * 13 12 10 38 38 H 1.09008 * 109.47288 * 204.12586 * 13 12 10 39 39 H 1.09001 * 109.47435 * 24.13553 * 14 12 10 40 40 H 1.08994 * 109.47528 * 144.13658 * 14 12 10 41 41 H 1.09000 * 113.74044 * 252.26128 * 17 15 14 42 42 H 1.08996 * 113.73973 * 23.45645 * 17 15 14 43 43 H 1.08998 * 113.77210 * 90.69272 * 18 17 15 44 44 H 1.08999 * 113.77200 * 221.97893 * 18 17 15 45 45 H 0.96997 * 119.99420 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 3.3386 1.2640 -0.7104 7 7 4.2429 0.3550 -0.5335 8 6 5.3468 0.4608 -1.2297 9 6 5.3817 1.5357 -2.0568 10 6 6.4849 1.9038 -2.9505 11 8 6.2915 2.6785 -3.8687 12 7 7.7130 1.3840 -2.7546 13 6 7.9261 0.3834 -1.7062 14 6 8.8346 1.8199 -3.5902 15 6 9.0222 0.8352 -4.7462 16 1 9.3906 -0.1377 -4.4205 17 6 7.8127 0.7547 -5.6952 18 6 8.8401 0.7373 -6.8415 19 7 9.7614 1.3978 -5.8928 20 6 10.8586 2.2067 -6.0237 21 1 11.4151 2.5077 -5.1484 22 6 11.2556 2.6398 -7.2814 23 7 10.5770 2.2733 -8.3481 24 14 12.7526 3.7425 -7.4600 25 1 13.3345 4.0081 -6.1199 26 1 13.7637 3.0701 -8.3148 27 1 12.3495 5.0267 -8.0874 28 16 3.8671 2.4145 -1.8592 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.2568 1.8014 1.9564 33 1 2.8829 1.0775 1.9564 34 1 2.6613 2.7670 1.4425 35 1 6.1589 -0.2469 -1.1529 36 1 7.6686 -0.6042 -2.0886 37 1 7.2957 0.6163 -0.8480 38 1 8.9727 0.3935 -1.4016 39 1 8.6264 2.8128 -3.9889 40 1 9.7437 1.8527 -2.9898 41 1 7.2429 -0.1698 -5.6025 42 1 7.1837 1.6447 -5.6808 43 1 9.1564 -0.2642 -7.1329 44 1 8.5603 1.3592 -7.6918 45 1 10.8546 2.5756 -9.2269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085598269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = 54.097520 kcal Electronic energy + Delta-G solvation = -27056.373818 eV Core-core repulsion = 23204.562748 eV Total energy + Delta-G solvation = -3851.811070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61285 -39.48950 -38.32775 -37.54652 -35.38589 -32.93178 -32.10353 -30.53810 -28.12202 -27.77603 -27.38454 -26.95557 -25.77347 -23.28548 -23.07683 -22.68675 -20.96266 -19.59345 -18.92637 -18.24282 -17.27989 -16.67094 -16.50375 -15.99378 -15.86051 -15.60202 -15.37064 -15.00235 -14.70044 -14.37888 -13.95008 -13.64633 -13.62032 -13.45704 -13.11886 -13.05085 -12.73094 -12.49355 -12.31777 -12.14356 -11.99400 -11.52464 -11.39153 -11.27672 -10.99261 -10.84672 -10.62854 -10.49345 -10.37666 -10.07785 -9.78518 -9.69652 -9.63970 -9.59350 -9.47657 -9.15211 -8.72180 -8.41049 -6.79955 -5.69236 -3.02731 0.03227 0.85952 1.40246 2.30619 3.09104 3.15815 3.38703 3.42270 3.46737 3.49780 3.70914 4.29709 4.46656 4.52225 4.59159 4.72375 4.87106 4.94506 4.95760 4.98707 5.16031 5.25035 5.27620 5.29356 5.30467 5.47574 5.55486 5.62055 5.68696 5.78609 5.89454 5.96498 6.13433 6.40431 6.57094 6.63816 6.69015 6.77951 6.86456 7.33878 7.39490 7.42530 7.59447 7.69972 8.06250 8.21717 9.10094 9.77440 10.68145 11.46987 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028817 B = 0.002279 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.422544 B =12285.747898 C =12350.542389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.025 3.975 7 N -0.450 5.450 8 C 0.061 3.939 9 C -0.276 4.276 10 C 0.587 3.413 11 O -0.519 6.519 12 N -0.592 5.592 13 C 0.056 3.944 14 C 0.117 3.883 15 C 0.128 3.872 16 H 0.042 0.958 17 C -0.159 4.159 18 C 0.156 3.844 19 N -0.600 5.600 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.918 5.918 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 S 0.233 5.767 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.204 0.796 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.021 0.979 44 H 0.076 0.924 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.297 -3.414 21.007 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.250 4.250 7 N -0.164 5.164 8 C -0.096 4.096 9 C -0.401 4.401 10 C 0.372 3.628 11 O -0.396 6.396 12 N -0.325 5.325 13 C -0.087 4.087 14 C -0.006 4.006 15 C 0.020 3.980 16 H 0.060 0.940 17 C -0.197 4.197 18 C 0.031 3.969 19 N -0.327 5.327 20 C -0.349 4.349 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.565 5.565 24 Si 0.741 3.259 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.217 1.217 28 S 0.491 5.509 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.220 0.780 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.039 0.961 44 H 0.095 0.905 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.612 -2.443 20.263 28.305 hybrid contribution 1.571 -0.168 -0.100 1.584 sum -18.041 -2.612 20.163 27.181 Atomic orbital electron populations 1.22896 0.80601 1.03363 1.00146 1.88096 1.19637 1.25585 1.94920 1.20456 0.87414 0.86358 0.95250 0.90024 1.22265 1.03316 1.02224 0.94850 1.27309 1.00436 0.96601 1.00693 1.66123 1.00705 1.25268 1.24302 1.23334 0.96425 0.97562 0.92304 1.25915 1.01946 1.03603 1.08605 1.16680 0.81403 0.81290 0.83383 1.90886 1.82353 1.35494 1.30886 1.47542 1.08448 1.41584 1.34957 1.22476 1.03622 0.91817 0.90832 1.21982 0.86050 1.00738 0.91809 1.22531 0.91736 0.94188 0.89542 0.94030 1.23826 0.96504 1.00539 0.98823 1.22295 0.85809 0.94893 0.93927 1.45963 1.32159 1.54281 1.00248 1.19012 1.02182 1.20685 0.93015 0.90418 1.24792 0.99525 1.00749 0.95415 1.69845 1.40612 1.48536 0.97507 0.86075 0.82159 0.80175 0.77506 1.20513 1.21851 1.21718 1.84030 1.07855 1.25332 1.33641 0.89097 0.93705 0.93735 0.91198 0.90576 0.91117 0.78029 0.91729 0.90016 0.90159 0.88554 0.91087 0.94101 0.89315 0.96074 0.90526 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.48 10.32 -35.23 -0.36 -3.84 16 3 C 0.17 1.36 3.23 -27.88 -0.09 1.27 16 4 H 0.08 0.48 7.78 -51.93 -0.40 0.07 16 5 C -0.17 -1.08 9.51 37.16 0.35 -0.73 16 6 C 0.02 0.27 6.28 -13.29 -0.08 0.18 16 7 N -0.45 -5.47 10.49 -11.50 -0.12 -5.60 16 8 C 0.06 0.71 9.31 -18.85 -0.18 0.53 16 9 C -0.28 -3.67 6.25 -37.10 -0.23 -3.90 16 10 C 0.59 9.54 7.21 -12.85 -0.09 9.44 16 11 O -0.52 -10.48 14.68 5.20 0.08 -10.41 16 12 N -0.59 -8.77 2.76 -183.13 -0.51 -9.27 16 13 C 0.06 0.55 8.82 59.84 0.53 1.08 16 14 C 0.12 2.13 5.43 -4.04 -0.02 2.10 16 15 C 0.13 2.67 4.59 -66.86 -0.31 2.37 16 16 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 17 C -0.16 -3.39 7.21 -25.80 -0.19 -3.58 16 18 C 0.16 3.93 7.64 -2.85 -0.02 3.91 16 19 N -0.60 -15.79 3.58 -169.73 -0.61 -16.40 16 20 C -0.22 -6.27 10.51 -15.06 -0.16 -6.43 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -28.06 11.32 55.49 0.63 -27.43 16 24 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 S 0.23 2.61 23.07 -107.50 -2.48 0.13 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 31 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 32 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.20 1.86 4.35 -52.49 -0.23 1.63 16 36 H 0.06 0.57 7.54 -51.93 -0.39 0.18 16 37 H 0.08 0.69 4.93 -51.93 -0.26 0.43 16 38 H 0.08 0.70 7.89 -51.92 -0.41 0.29 16 39 H 0.10 2.06 7.31 -51.93 -0.38 1.68 16 40 H 0.07 1.17 7.95 -51.93 -0.41 0.76 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 2.05 6.25 -51.93 -0.32 1.73 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 2.14 6.98 -51.93 -0.36 1.78 16 45 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -35.82 379.18 -8.66 -44.48 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.49 Total: -2.11 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 0.51 Total: 7.17 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.61 Total: -58.69 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.29 Total: -14.25 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.48 Total: 0.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.82 -8.66 -44.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085598269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.582 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds