Wall clock time and date at job start Sat Apr 11 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00465 * 2 1 4 4 H 1.09006 * 109.46718 * 329.98956 * 3 2 1 5 5 C 1.52991 * 109.47448 * 89.99561 * 3 2 1 6 6 C 1.50705 * 109.46628 * 209.99937 * 3 2 1 7 7 N 1.29422 * 124.80442 * 315.01692 * 6 3 2 8 8 C 1.30950 * 117.36429 * 179.69352 * 7 6 3 9 9 C 1.35663 * 114.18543 * 0.52367 * 8 7 6 10 10 C 1.46686 * 126.12658 * 179.78936 * 9 8 7 11 11 O 1.21682 * 120.00009 * 179.69376 * 10 9 8 12 12 N 1.34777 * 120.00244 * 359.41082 * 10 9 8 13 13 C 1.46496 * 120.00345 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47047 * 180.02562 * 13 12 10 15 15 C 1.53774 * 113.61539 * 274.13704 * 14 13 12 16 16 C 1.53956 * 87.02275 * 220.04910 * 15 14 13 17 17 N 1.46499 * 113.53800 * 270.81358 * 16 15 14 18 18 C 1.36928 * 120.00165 * 252.48989 * 17 16 15 19 19 H 1.08004 * 120.00104 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00340 * 180.02562 * 18 17 16 21 21 N 1.31619 * 119.99747 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47388 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47195 * 119.99793 * 22 20 18 25 25 H 1.48502 * 109.47140 * 239.99482 * 22 20 18 26 26 C 1.53781 * 113.61157 * 176.52870 * 14 13 12 27 27 S 1.70953 * 124.80218 * 135.00064 * 6 3 2 28 28 H 1.08995 * 109.47487 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46640 * 300.01099 * 1 2 3 30 30 H 1.09004 * 109.46433 * 59.99981 * 1 2 3 31 31 H 1.09004 * 109.46972 * 60.00250 * 5 3 2 32 32 H 1.09007 * 109.47262 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47379 * 299.99821 * 5 3 2 34 34 H 1.07996 * 122.90577 * 180.33513 * 8 7 6 35 35 H 0.97004 * 119.99652 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.46924 * 300.00453 * 13 12 10 37 37 H 1.09001 * 109.46807 * 60.00617 * 13 12 10 38 38 H 1.09001 * 112.84660 * 45.33966 * 14 13 12 39 39 H 1.09000 * 113.61454 * 334.56936 * 15 14 13 40 40 H 1.09003 * 113.61444 * 105.47679 * 15 14 13 41 41 H 1.08997 * 113.74276 * 139.94043 * 16 15 14 42 42 H 0.97005 * 119.99821 * 72.49691 * 17 16 15 43 43 H 0.97003 * 119.99525 * 180.02562 * 21 20 18 44 44 H 1.08996 * 113.62067 * 254.52901 * 26 14 13 45 45 H 1.09000 * 113.61742 * 25.43529 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3452 1.9993 -0.5140 5 6 2.2177 1.7714 1.4424 6 6 3.3388 1.2636 -0.7104 7 7 4.2429 0.3546 -0.5333 8 6 5.3446 0.4570 -1.2338 9 6 5.3822 1.5353 -2.0562 10 6 6.4859 1.9036 -2.9494 11 8 6.3988 2.8971 -3.6465 12 7 7.5988 1.1447 -2.9939 13 6 8.7009 1.5122 -3.8864 14 6 9.8332 0.4929 -3.7451 15 6 10.8049 0.8071 -2.5955 16 6 11.9379 0.3642 -3.5391 17 7 12.2349 -1.0684 -3.4647 18 6 13.3859 -1.4986 -2.8606 19 1 14.0751 -0.7817 -2.4393 20 6 13.6676 -2.8560 -2.7905 21 7 12.8284 -3.7296 -3.3053 22 14 15.2376 -3.4428 -1.9657 23 1 16.0052 -2.2713 -1.4723 24 1 14.8956 -4.3278 -0.8233 25 1 16.0602 -4.1958 -2.9462 26 6 11.0086 0.7410 -4.7051 27 16 3.8645 2.4099 -1.8646 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 2.8830 1.0774 1.9563 32 1 2.6616 2.7670 1.4423 33 1 1.2569 1.8016 1.9562 34 1 6.1544 -0.2538 -1.1608 35 1 7.6698 0.3547 -2.4354 36 1 8.3463 1.5204 -4.9171 37 1 9.0685 2.5033 -3.6206 38 1 9.4777 -0.5375 -3.7472 39 1 10.8435 1.8643 -2.3330 40 1 10.6795 0.1589 -1.7282 41 1 12.8311 0.9856 -3.4744 42 1 11.6161 -1.7123 -3.8435 43 1 13.0251 -4.6782 -3.2560 44 1 11.0474 0.0395 -5.5385 45 1 11.1030 1.7801 -5.0205 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091029521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:40 Heat of formation + Delta-G solvation = -3.782257 kcal Electronic energy + Delta-G solvation = -25777.965047 eV Core-core repulsion = 21923.644122 eV Total energy + Delta-G solvation = -3854.320926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52518 -39.60686 -38.58568 -38.25841 -34.78118 -33.32737 -32.90176 -30.69902 -29.86486 -27.52536 -27.08168 -26.16676 -25.09353 -23.78553 -23.35532 -22.09962 -21.54609 -19.87772 -18.81462 -18.37870 -17.68895 -17.24664 -16.63428 -16.16939 -15.90186 -15.66815 -15.52351 -14.98322 -14.70099 -14.55809 -14.24014 -14.05468 -13.71879 -13.59579 -13.29802 -13.14113 -12.92244 -12.79470 -12.31092 -12.20782 -11.96992 -11.90859 -11.52515 -11.45196 -11.06885 -10.88480 -10.72582 -10.51212 -10.30936 -10.15023 -9.97221 -9.83250 -9.75405 -9.71958 -9.52912 -9.36069 -9.07564 -8.91309 -7.02501 -5.83007 -3.12117 -0.13218 0.71932 1.26782 2.15100 2.98138 3.09230 3.31540 3.40351 3.46398 3.48478 3.59018 4.21608 4.49621 4.53411 4.54021 4.66603 4.82243 4.86317 4.89320 5.00440 5.03242 5.11402 5.19159 5.22919 5.25054 5.42835 5.56808 5.60077 5.66014 5.72020 5.81535 5.90377 6.05723 6.17762 6.28192 6.34164 6.54836 6.57708 6.71169 6.85383 7.00830 7.28278 7.32426 7.67599 7.97560 8.36103 9.46971 10.04175 10.38276 11.39409 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.001969 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.635828 B =14218.364942 C =15497.203020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.166 3.834 4 H 0.083 0.917 5 C -0.169 4.169 6 C 0.032 3.968 7 N -0.449 5.449 8 C 0.094 3.906 9 C -0.288 4.288 10 C 0.592 3.408 11 O -0.540 6.540 12 N -0.708 5.708 13 C 0.132 3.868 14 C -0.121 4.121 15 C -0.169 4.169 16 C 0.167 3.833 17 N -0.706 5.706 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.147 4.147 27 S 0.234 5.766 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.185 0.815 35 H 0.404 0.596 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.536 13.342 5.566 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.104 3.896 4 H 0.101 0.899 5 C -0.228 4.228 6 C -0.243 4.243 7 N -0.162 5.162 8 C -0.065 4.065 9 C -0.413 4.413 10 C 0.376 3.624 11 O -0.419 6.419 12 N -0.359 5.359 13 C 0.009 3.991 14 C -0.139 4.139 15 C -0.210 4.210 16 C 0.055 3.945 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.187 4.187 27 S 0.493 5.507 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.202 0.798 35 H 0.239 0.761 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.867 14.351 5.072 30.013 hybrid contribution 1.141 -1.565 0.684 2.054 sum -24.726 12.786 5.756 28.425 Atomic orbital electron populations 1.22906 0.80504 1.03453 1.00139 1.88107 1.19716 1.25461 1.94916 1.20480 0.87272 0.86460 0.95353 0.89949 1.22272 1.03454 1.02280 0.94748 1.27366 1.00400 0.96188 1.00371 1.66042 1.00816 1.25361 1.24021 1.22330 0.96124 0.96238 0.91843 1.25886 1.02274 1.03611 1.09520 1.16684 0.81189 0.83213 0.81294 1.90841 1.81001 1.26373 1.43666 1.45832 1.16339 1.29357 1.44401 1.21576 0.85456 0.98809 0.93223 1.22732 0.92812 0.98685 0.99714 1.23927 0.99140 1.00063 0.97883 1.21091 0.93833 0.87397 0.92191 1.42177 1.24267 0.99721 1.68243 1.19333 0.97533 0.91059 1.29413 0.90924 1.24771 0.98767 0.95905 1.01473 1.69670 1.36819 1.01103 1.50396 0.86098 0.82784 0.78486 0.78698 1.20494 1.21825 1.21835 1.23442 0.95936 1.01093 0.98202 1.83963 1.07368 1.25698 1.33688 0.89014 0.93641 0.93761 0.90464 0.91081 0.91080 0.79798 0.76111 0.91435 0.91168 0.88765 0.91364 0.91431 0.91896 0.78110 0.93471 0.91238 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.23 16 2 O -0.36 -3.35 10.32 -35.23 -0.36 -3.71 16 3 C 0.17 1.26 3.23 -27.89 -0.09 1.17 16 4 H 0.08 0.41 7.78 -51.93 -0.40 0.00 16 5 C -0.17 -1.05 9.51 37.15 0.35 -0.70 16 6 C 0.03 0.32 6.28 -13.29 -0.08 0.23 16 7 N -0.45 -5.33 10.49 -11.50 -0.12 -5.45 16 8 C 0.09 1.02 10.93 -18.85 -0.21 0.82 16 9 C -0.29 -3.35 6.48 -37.09 -0.24 -3.59 16 10 C 0.59 7.96 7.79 -12.85 -0.10 7.86 16 11 O -0.54 -8.91 16.96 5.20 0.09 -8.82 16 12 N -0.71 -8.56 5.54 -61.62 -0.34 -8.90 16 13 C 0.13 1.70 5.50 -4.04 -0.02 1.68 16 14 C -0.12 -1.73 3.62 -89.81 -0.33 -2.05 16 15 C -0.17 -2.71 7.44 -25.83 -0.19 -2.90 16 16 C 0.17 3.18 4.57 -67.02 -0.31 2.87 16 17 N -0.71 -17.06 5.31 -52.55 -0.28 -17.34 16 18 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 22 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C -0.15 -2.27 7.39 -25.92 -0.19 -2.47 16 27 S 0.23 2.26 23.01 -107.50 -2.47 -0.21 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 30 H 0.04 0.18 8.09 -51.93 -0.42 -0.24 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 34 H 0.19 1.62 7.15 -52.49 -0.38 1.25 16 35 H 0.40 4.18 7.18 -40.82 -0.29 3.89 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 42 H 0.38 9.84 7.90 -40.82 -0.32 9.52 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -33.59 393.55 -9.21 -42.80 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.80 Total: 8.56 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.56 Total: -3.04 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.02 Total: -58.58 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.28 Total: -12.53 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.47 Total: -0.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.59 -9.21 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091029521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.019 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds