Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00465 * 2 1 4 4 H 1.09006 * 109.46718 * 329.98956 * 3 2 1 5 5 C 1.52991 * 109.47448 * 89.99561 * 3 2 1 6 6 C 1.50705 * 109.46628 * 209.99937 * 3 2 1 7 7 N 1.29422 * 124.80442 * 315.01692 * 6 3 2 8 8 C 1.30950 * 117.36429 * 179.69352 * 7 6 3 9 9 C 1.35663 * 114.18543 * 0.52367 * 8 7 6 10 10 C 1.46686 * 126.12658 * 179.78936 * 9 8 7 11 11 O 1.21682 * 120.00009 * 179.69376 * 10 9 8 12 12 N 1.34777 * 120.00244 * 359.41082 * 10 9 8 13 13 C 1.46496 * 120.00345 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47047 * 180.02562 * 13 12 10 15 15 C 1.53774 * 113.61539 * 274.13704 * 14 13 12 16 16 C 1.53956 * 87.02275 * 220.04910 * 15 14 13 17 17 N 1.46499 * 113.53800 * 270.81358 * 16 15 14 18 18 C 1.36928 * 120.00165 * 252.48989 * 17 16 15 19 19 H 1.08004 * 120.00104 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00340 * 180.02562 * 18 17 16 21 21 N 1.31619 * 119.99747 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47388 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47195 * 119.99793 * 22 20 18 25 25 H 1.48502 * 109.47140 * 239.99482 * 22 20 18 26 26 C 1.53781 * 113.61157 * 176.52870 * 14 13 12 27 27 S 1.70953 * 124.80218 * 135.00064 * 6 3 2 28 28 H 1.08995 * 109.47487 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46640 * 300.01099 * 1 2 3 30 30 H 1.09004 * 109.46433 * 59.99981 * 1 2 3 31 31 H 1.09004 * 109.46972 * 60.00250 * 5 3 2 32 32 H 1.09007 * 109.47262 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47379 * 299.99821 * 5 3 2 34 34 H 1.07996 * 122.90577 * 180.33513 * 8 7 6 35 35 H 0.97004 * 119.99652 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.46924 * 300.00453 * 13 12 10 37 37 H 1.09001 * 109.46807 * 60.00617 * 13 12 10 38 38 H 1.09001 * 112.84660 * 45.33966 * 14 13 12 39 39 H 1.09000 * 113.61454 * 334.56936 * 15 14 13 40 40 H 1.09003 * 113.61444 * 105.47679 * 15 14 13 41 41 H 1.08997 * 113.74276 * 139.94043 * 16 15 14 42 42 H 0.97005 * 119.99821 * 72.49691 * 17 16 15 43 43 H 0.97003 * 119.99525 * 180.02562 * 21 20 18 44 44 H 1.08996 * 113.62067 * 254.52901 * 26 14 13 45 45 H 1.09000 * 113.61742 * 25.43529 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3452 1.9993 -0.5140 5 6 2.2177 1.7714 1.4424 6 6 3.3388 1.2636 -0.7104 7 7 4.2429 0.3546 -0.5333 8 6 5.3446 0.4570 -1.2338 9 6 5.3822 1.5353 -2.0562 10 6 6.4859 1.9036 -2.9494 11 8 6.3988 2.8971 -3.6465 12 7 7.5988 1.1447 -2.9939 13 6 8.7009 1.5122 -3.8864 14 6 9.8332 0.4929 -3.7451 15 6 10.8049 0.8071 -2.5955 16 6 11.9379 0.3642 -3.5391 17 7 12.2349 -1.0684 -3.4647 18 6 13.3859 -1.4986 -2.8606 19 1 14.0751 -0.7817 -2.4393 20 6 13.6676 -2.8560 -2.7905 21 7 12.8284 -3.7296 -3.3053 22 14 15.2376 -3.4428 -1.9657 23 1 16.0052 -2.2713 -1.4723 24 1 14.8956 -4.3278 -0.8233 25 1 16.0602 -4.1958 -2.9462 26 6 11.0086 0.7410 -4.7051 27 16 3.8645 2.4099 -1.8646 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 2.8830 1.0774 1.9563 32 1 2.6616 2.7670 1.4423 33 1 1.2569 1.8016 1.9562 34 1 6.1544 -0.2538 -1.1608 35 1 7.6698 0.3547 -2.4354 36 1 8.3463 1.5204 -4.9171 37 1 9.0685 2.5033 -3.6206 38 1 9.4777 -0.5375 -3.7472 39 1 10.8435 1.8643 -2.3330 40 1 10.6795 0.1589 -1.7282 41 1 12.8311 0.9856 -3.4744 42 1 11.6161 -1.7123 -3.8435 43 1 13.0251 -4.6782 -3.2560 44 1 11.0474 0.0395 -5.5385 45 1 11.1030 1.7801 -5.0205 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091029521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = -27.797293 kcal Electronic energy + Delta-G solvation = -25779.006418 eV Core-core repulsion = 21923.644122 eV Total energy + Delta-G solvation = -3855.362296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41684 -40.60700 -39.79817 -38.96225 -36.08203 -35.02825 -33.60366 -32.17158 -31.08727 -28.55284 -27.70462 -26.93508 -26.42732 -25.65953 -24.11030 -23.30587 -22.54155 -20.82682 -19.82396 -19.53875 -19.23715 -18.49404 -17.30287 -17.08015 -16.76979 -16.64121 -16.46209 -16.28234 -15.84374 -15.79366 -15.31658 -15.27592 -14.94189 -14.66271 -14.54854 -14.15821 -13.77667 -13.59253 -13.30205 -13.26066 -12.95401 -12.92515 -12.74734 -12.66230 -12.62724 -12.12787 -12.05099 -12.00746 -11.79083 -11.48663 -11.38465 -10.97035 -10.90774 -10.80180 -10.68911 -10.53628 -10.23958 -10.00965 -8.99194 -7.95410 -5.23275 -0.95180 -0.05184 0.47788 1.28602 1.48131 1.48379 1.58404 2.02399 2.11504 2.55793 2.76788 2.95073 3.37492 3.59104 3.68162 3.73106 3.78669 3.88023 4.00420 4.02888 4.08140 4.15085 4.33119 4.40544 4.47659 4.56937 4.65808 4.72000 4.74536 4.78150 4.87819 4.90918 4.94465 5.00181 5.11106 5.21439 5.22173 5.35625 5.45259 5.54107 5.67091 6.09935 6.28573 6.31780 6.53138 6.97401 7.33684 8.11289 8.33121 9.27970 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.001969 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.635828 B =14218.364942 C =15497.203020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.396 6.396 3 C 0.159 3.841 4 H 0.112 0.888 5 C -0.165 4.165 6 C 0.037 3.963 7 N -0.481 5.481 8 C 0.100 3.900 9 C -0.316 4.316 10 C 0.595 3.405 11 O -0.575 6.575 12 N -0.703 5.703 13 C 0.141 3.859 14 C -0.103 4.103 15 C -0.154 4.154 16 C 0.142 3.858 17 N -0.720 5.720 18 C -0.240 4.240 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.294 1.294 25 H -0.295 1.295 26 C -0.133 4.133 27 S 0.264 5.736 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.198 0.802 35 H 0.412 0.588 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.058 0.942 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.704 15.019 6.199 31.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.315 6.315 3 C 0.098 3.902 4 H 0.130 0.870 5 C -0.224 4.224 6 C -0.238 4.238 7 N -0.195 5.195 8 C -0.059 4.059 9 C -0.440 4.440 10 C 0.381 3.619 11 O -0.456 6.456 12 N -0.353 5.353 13 C 0.018 3.982 14 C -0.122 4.122 15 C -0.194 4.194 16 C 0.032 3.968 17 N -0.358 5.358 18 C -0.372 4.372 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.190 1.190 24 H -0.222 1.222 25 H -0.222 1.222 26 C -0.172 4.172 27 S 0.524 5.476 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.215 0.785 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -27.042 16.080 5.719 31.977 hybrid contribution 1.417 -2.009 0.505 2.510 sum -25.625 14.071 6.224 29.889 Atomic orbital electron populations 1.23103 0.78691 1.04185 1.01613 1.88059 1.21822 1.26453 1.95137 1.20795 0.86571 0.86722 0.96160 0.87043 1.22262 1.04194 1.02110 0.93821 1.27943 1.00863 0.95404 0.99590 1.66118 1.01576 1.26670 1.25163 1.22559 0.96268 0.96059 0.91037 1.25778 1.02999 1.04873 1.10393 1.16834 0.81519 0.82633 0.80940 1.90817 1.81718 1.27858 1.45225 1.45764 1.15943 1.29469 1.44162 1.21422 0.85019 0.98229 0.93539 1.22505 0.92943 0.98535 0.98213 1.23747 0.97731 1.00942 0.97002 1.21438 0.95138 0.84784 0.95408 1.42308 1.23422 1.01767 1.68274 1.19705 0.98156 0.91238 1.28079 0.90529 1.25542 1.01907 0.96285 1.03124 1.69815 1.38683 1.00942 1.52488 0.85097 0.79419 0.78047 0.77347 1.19035 1.22179 1.22220 1.23341 0.94734 1.02426 0.96725 1.83799 1.06028 1.24898 1.32917 0.88790 0.91906 0.92490 0.92666 0.89996 0.89018 0.78513 0.75139 0.91255 0.90707 0.89940 0.88941 0.93290 0.92155 0.79347 0.94073 0.92326 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.40 -6.77 10.32 -148.98 -1.54 -8.30 16 3 C 0.16 2.13 3.23 29.85 0.10 2.23 16 4 H 0.11 0.79 7.78 -2.38 -0.02 0.78 16 5 C -0.16 -1.76 9.51 71.98 0.68 -1.08 16 6 C 0.04 0.68 6.28 88.47 0.56 1.24 16 7 N -0.48 -11.13 10.49 -190.30 -2.00 -13.13 16 8 C 0.10 2.13 10.93 84.23 0.92 3.06 16 9 C -0.32 -7.10 6.48 23.88 0.15 -6.95 16 10 C 0.59 15.48 7.79 86.45 0.67 16.15 16 11 O -0.57 -18.47 16.96 -4.29 -0.07 -18.54 16 12 N -0.70 -16.15 5.54 -467.08 -2.59 -18.74 16 13 C 0.14 3.38 5.50 86.38 0.47 3.85 16 14 C -0.10 -2.81 3.62 -10.27 -0.04 -2.85 16 15 C -0.15 -4.71 7.44 31.18 0.23 -4.48 16 16 C 0.14 5.29 4.57 45.58 0.21 5.50 16 17 N -0.72 -35.08 5.31 -320.17 -1.70 -36.78 16 18 C -0.24 -13.08 9.97 84.03 0.84 -12.24 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 21 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 22 Si 0.97 45.78 29.55 68.60 2.03 47.80 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 C -0.13 -3.90 7.39 31.12 0.23 -3.67 16 27 S 0.26 4.77 23.01 -56.49 -1.30 3.47 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.31 7.87 -2.39 -0.02 0.29 16 30 H 0.06 0.33 8.09 -2.38 -0.02 0.31 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.09 0.59 7.87 -2.39 -0.02 0.57 16 34 H 0.20 3.36 7.15 -2.91 -0.02 3.34 16 35 H 0.41 8.12 7.18 -92.71 -0.67 7.46 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.78 7.88 -2.39 -0.02 1.76 16 38 H 0.08 2.49 8.14 -2.39 -0.02 2.48 16 39 H 0.09 2.42 7.92 -2.39 -0.02 2.40 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 42 H 0.37 19.56 7.90 -92.70 -0.73 18.83 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.11 2.55 8.10 -2.39 -0.02 2.53 16 Total: -1.00 -72.85 393.55 -0.54 -73.38 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.38 Total: 30.82 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 6.72 Total: -1.72 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -6.00 Total: -126.91 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -1.61 Total: -26.85 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.30 Total: 3.47 kcal Total: -72.85 -0.54 -73.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091029521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.585 kcal (2) G-P(sol) polarization free energy of solvation -72.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds