Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00172 * 2 1 4 4 H 1.09001 * 109.47232 * 29.99319 * 3 2 1 5 5 C 1.53006 * 109.46748 * 269.99873 * 3 2 1 6 6 C 1.50698 * 109.47154 * 150.00006 * 3 2 1 7 7 N 1.28645 * 124.71588 * 224.71860 * 6 3 2 8 8 C 1.33560 * 115.76883 * 179.82657 * 7 6 3 9 9 C 1.47262 * 123.14849 * 180.24883 * 8 7 6 10 10 O 1.21633 * 120.00363 * 180.24785 * 9 8 7 11 11 N 1.34783 * 119.99778 * 0.25478 * 9 8 7 12 12 C 1.46496 * 119.99696 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46670 * 179.97438 * 12 11 9 14 14 C 1.53783 * 113.61719 * 274.13681 * 13 12 11 15 15 C 1.53952 * 87.02090 * 220.04801 * 14 13 12 16 16 N 1.46496 * 113.54065 * 270.81608 * 15 14 13 17 17 C 1.36939 * 119.99635 * 252.49531 * 16 15 14 18 18 H 1.07995 * 120.00490 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00086 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00485 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99994 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47407 * 90.00071 * 21 19 17 23 23 H 1.48498 * 109.47655 * 210.00246 * 21 19 17 24 24 H 1.48508 * 109.47189 * 330.00556 * 21 19 17 25 25 C 1.53789 * 87.11305 * 25.36625 * 15 14 13 26 26 C 1.35211 * 113.71348 * 0.46186 * 8 7 6 27 27 S 1.70764 * 124.72497 * 45.02567 * 6 3 2 28 28 H 1.08997 * 109.46783 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46897 * 300.00216 * 1 2 3 30 30 H 1.09001 * 109.46938 * 60.00344 * 1 2 3 31 31 H 1.09001 * 109.47002 * 179.97438 * 5 3 2 32 32 H 1.08993 * 109.46955 * 299.99993 * 5 3 2 33 33 H 1.09000 * 109.47050 * 59.99822 * 5 3 2 34 34 H 0.97001 * 119.99581 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.47495 * 299.99605 * 12 11 9 36 36 H 1.09002 * 109.47267 * 60.00069 * 12 11 9 37 37 H 1.08997 * 112.84912 * 45.34105 * 13 12 11 38 38 H 1.08998 * 113.61419 * 334.57353 * 14 13 12 39 39 H 1.09000 * 113.60887 * 105.47200 * 14 13 12 40 40 H 1.08998 * 113.74039 * 139.94062 * 15 14 13 41 41 H 0.96998 * 120.00299 * 72.49422 * 16 15 14 42 42 H 0.96994 * 120.00466 * 179.97438 * 20 19 17 43 43 H 1.09002 * 113.61465 * 220.09262 * 25 15 14 44 44 H 1.08995 * 113.61758 * 89.18199 * 25 15 14 45 45 H 1.07996 * 125.59011 * 179.78286 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9995 0.5137 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2639 0.7104 7 7 3.7346 2.1304 1.5749 8 6 4.9452 1.9178 2.0975 9 6 5.5548 2.8036 3.1037 10 8 6.6640 2.5579 3.5382 11 7 4.8835 3.8866 3.5432 12 6 5.4897 4.7675 4.5445 13 6 4.5268 5.9121 4.8665 14 6 4.6454 7.1061 3.9046 15 6 4.4727 8.0128 5.1367 16 7 3.0748 8.3307 5.4380 17 6 2.5909 9.5884 5.1948 18 1 3.2399 10.3462 4.7813 19 6 1.2662 9.8896 5.4798 20 7 0.8011 11.0986 5.2466 21 14 0.1433 8.5789 6.1943 22 1 0.2127 8.6222 7.6771 23 1 -1.2532 8.8310 5.7567 24 1 0.5776 7.2412 5.7174 25 6 5.0345 6.8513 5.9735 26 6 5.5607 0.8157 1.6131 27 16 4.5308 0.0642 0.4744 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.6607 2.7673 -1.4426 32 1 2.8829 1.0774 -1.9563 33 1 1.2569 1.8013 -1.9564 34 1 3.9991 4.0827 3.1964 35 1 5.6953 4.1992 5.4516 36 1 6.4212 5.1761 4.1527 37 1 3.5019 5.5732 5.0176 38 1 5.6244 7.1914 3.4333 39 1 3.8238 7.1755 3.1917 40 1 5.1145 8.8938 5.1265 41 1 2.4919 7.6503 5.8097 42 1 -0.1246 11.3089 5.4453 43 1 4.5266 6.7154 6.9283 44 1 6.1202 6.8669 6.0688 45 1 6.5420 0.4670 1.8991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091029652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = -27.948393 kcal Electronic energy + Delta-G solvation = -26282.969483 eV Core-core repulsion = 22427.600636 eV Total energy + Delta-G solvation = -3855.368848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68464 -40.47304 -39.75114 -38.95869 -36.14773 -35.00287 -33.59182 -32.67286 -30.79345 -29.32025 -27.79869 -26.69729 -26.47126 -25.46092 -24.45277 -23.03379 -22.22039 -21.06521 -20.29146 -19.74173 -19.49137 -17.84490 -17.46159 -17.29173 -16.84524 -16.80279 -16.56101 -16.30571 -16.09347 -15.63450 -15.38952 -15.05659 -14.88586 -14.65209 -14.54584 -14.11444 -14.00676 -13.66837 -13.39719 -13.29767 -13.12364 -13.03753 -12.96540 -12.71412 -12.65658 -12.20959 -12.08193 -11.90434 -11.71913 -11.62451 -11.29237 -11.01338 -10.97148 -10.89771 -10.84394 -10.67773 -10.27224 -9.91694 -9.30762 -8.03691 -5.37250 -0.60832 0.16513 0.55640 0.74313 1.36338 1.39938 1.46863 2.08450 2.17628 2.35484 2.46876 3.20414 3.26511 3.50066 3.57369 3.71740 3.78061 3.97030 4.00490 4.03143 4.08313 4.20673 4.25414 4.34960 4.49249 4.55391 4.60329 4.67709 4.70307 4.74399 4.83447 4.89190 4.91339 4.94700 5.06712 5.17871 5.20246 5.29480 5.42564 5.52268 5.79768 5.99166 6.18224 6.21869 6.49452 7.02096 7.06749 7.83697 8.02111 9.17897 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.002622 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.805694 B =10674.782371 C =12636.748630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.161 3.839 4 H 0.092 0.908 5 C -0.166 4.166 6 C 0.002 3.998 7 N -0.456 5.456 8 C -0.016 4.016 9 C 0.590 3.410 10 O -0.570 6.570 11 N -0.703 5.703 12 C 0.137 3.863 13 C -0.107 4.107 14 C -0.156 4.156 15 C 0.147 3.853 16 N -0.734 5.734 17 C -0.232 4.232 18 H 0.057 0.943 19 C -0.064 4.064 20 N -0.984 5.984 21 Si 0.955 3.045 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.252 1.252 25 C -0.130 4.130 26 C -0.237 4.237 27 S 0.324 5.676 28 H 0.105 0.895 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.413 0.587 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.366 0.634 42 H 0.258 0.742 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 -29.479 -13.454 32.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.100 3.900 4 H 0.110 0.890 5 C -0.225 4.225 6 C -0.277 4.277 7 N -0.173 5.173 8 C -0.152 4.152 9 C 0.374 3.626 10 O -0.450 6.450 11 N -0.353 5.353 12 C 0.014 3.986 13 C -0.126 4.126 14 C -0.196 4.196 15 C 0.037 3.963 16 N -0.376 5.376 17 C -0.363 4.363 18 H 0.075 0.925 19 C -0.256 4.256 20 N -0.634 5.634 21 Si 0.782 3.218 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.177 1.177 25 C -0.169 4.169 26 C -0.380 4.380 27 S 0.582 5.418 28 H 0.123 0.877 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.249 0.751 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.128 0.872 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.542 -29.989 -13.673 33.422 hybrid contribution -1.143 0.957 1.083 1.842 sum 4.399 -29.032 -12.591 31.949 Atomic orbital electron populations 1.23050 0.78320 1.04442 1.01228 1.87848 1.22205 1.26144 1.95257 1.20390 0.87493 0.86370 0.95760 0.89028 1.22291 1.04464 1.02250 0.93468 1.27156 1.03315 0.96978 1.00264 1.66804 1.12880 1.28251 1.09403 1.20236 0.92468 0.98836 1.03633 1.17313 0.84275 0.80539 0.80447 1.90780 1.20402 1.74120 1.59716 1.45886 1.21504 1.25263 1.42611 1.21442 0.96074 0.89994 0.91076 1.22582 0.98973 0.92896 0.98170 1.23747 1.01529 0.96679 0.97654 1.21373 0.84517 0.95413 0.94962 1.42456 1.08440 1.09852 1.76829 1.19073 0.94723 0.88501 1.33992 0.92458 1.25502 0.98724 0.98631 1.02702 1.69880 1.15823 1.21451 1.56289 0.85420 0.78041 0.79873 0.78498 1.20425 1.22220 1.17672 1.23355 1.02137 0.94367 0.97051 1.27049 1.07945 0.99615 1.03356 1.82657 1.02914 1.23884 1.32362 0.87707 0.93646 0.92083 0.91076 0.90751 0.89362 0.75054 0.91017 0.90883 0.89682 0.89008 0.93220 0.92133 0.80039 0.93305 0.91246 0.87188 0.78261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -5.45 10.17 -148.98 -1.52 -6.97 16 3 C 0.16 2.32 3.23 29.85 0.10 2.41 16 4 H 0.09 1.36 7.79 -2.39 -0.02 1.34 16 5 C -0.17 -1.76 9.51 71.98 0.68 -1.08 16 6 C 0.00 0.03 6.30 88.57 0.56 0.59 16 7 N -0.46 -10.51 10.12 -180.84 -1.83 -12.34 16 8 C -0.02 -0.39 6.70 40.56 0.27 -0.12 16 9 C 0.59 16.55 7.80 86.61 0.68 17.23 16 10 O -0.57 -18.67 16.71 -4.14 -0.07 -18.74 16 11 N -0.70 -18.12 5.55 -466.52 -2.59 -20.71 16 12 C 0.14 3.39 5.50 86.38 0.48 3.86 16 13 C -0.11 -2.88 3.62 -10.26 -0.04 -2.92 16 14 C -0.16 -4.84 7.44 31.18 0.23 -4.61 16 15 C 0.15 5.37 4.57 45.58 0.21 5.58 16 16 N -0.73 -33.75 5.11 -320.17 -1.64 -35.39 16 17 C -0.23 -13.20 10.45 84.03 0.88 -12.32 16 18 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 19 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 20 N -0.98 -63.19 13.97 21.65 0.30 -62.88 16 21 Si 0.95 45.27 27.73 68.60 1.90 47.17 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 24 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 25 C -0.13 -3.59 7.39 31.13 0.23 -3.36 16 26 C -0.24 -4.46 10.62 67.12 0.71 -3.75 16 27 S 0.32 4.47 22.74 -56.49 -1.28 3.19 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.04 0.42 8.08 -2.39 -0.02 0.40 16 30 H 0.06 0.36 7.87 -2.39 -0.02 0.34 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.67 7.87 -2.39 -0.02 0.65 16 34 H 0.41 10.31 7.99 -92.71 -0.74 9.57 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.80 7.87 -2.39 -0.02 1.78 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.09 2.51 7.92 -2.39 -0.02 2.49 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 2.33 8.10 -2.39 -0.02 2.31 16 41 H 0.37 16.11 5.76 -92.71 -0.53 15.57 16 42 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.11 2.48 8.10 -2.39 -0.02 2.46 16 45 H 0.20 3.24 8.03 -2.91 -0.02 3.22 16 Total: -1.00 -73.88 391.04 -0.36 -74.24 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.32 Total: 32.78 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 6.68 Total: -0.35 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -5.75 Total: -131.33 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -1.58 Total: -25.71 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.28 Total: 3.19 kcal Total: -73.88 -0.36 -74.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091029652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.295 kcal (2) G-P(sol) polarization free energy of solvation -73.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds