Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00244 * 2 1 4 4 H 1.08995 * 109.46995 * 330.00004 * 3 2 1 5 5 C 1.53000 * 109.47253 * 90.00104 * 3 2 1 6 6 C 1.50699 * 109.46958 * 210.00075 * 3 2 1 7 7 N 1.28648 * 124.71679 * 135.28365 * 6 3 2 8 8 C 1.33569 * 115.76479 * 180.21788 * 7 6 3 9 9 C 1.47264 * 123.14280 * 179.75814 * 8 7 6 10 10 O 1.21633 * 119.99975 * 179.73296 * 9 8 7 11 11 N 1.34777 * 119.99990 * 359.45944 * 9 8 7 12 12 C 1.46499 * 120.00195 * 180.27783 * 11 9 8 13 13 C 1.52990 * 109.47304 * 179.97438 * 12 11 9 14 14 C 1.53788 * 113.61565 * 274.13358 * 13 12 11 15 15 C 1.53950 * 87.02023 * 220.05116 * 14 13 12 16 16 N 1.46501 * 113.53488 * 270.80566 * 15 14 13 17 17 C 1.36938 * 120.00379 * 252.49672 * 16 15 14 18 18 H 1.07995 * 119.99522 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99826 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99563 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00036 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46931 * 90.00281 * 21 19 17 23 23 H 1.48501 * 109.47160 * 209.99788 * 21 19 17 24 24 H 1.48491 * 109.47478 * 329.99996 * 21 19 17 25 25 C 1.53781 * 87.11440 * 25.36113 * 15 14 13 26 26 C 1.35203 * 113.71186 * 359.48882 * 8 7 6 27 27 S 1.70765 * 124.72199 * 314.97361 * 6 3 2 28 28 H 1.09002 * 109.47339 * 59.99847 * 1 2 3 29 29 H 1.08996 * 109.47512 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47063 * 300.00061 * 1 2 3 31 31 H 1.09001 * 109.46682 * 299.99929 * 5 3 2 32 32 H 1.08995 * 109.47202 * 60.00026 * 5 3 2 33 33 H 1.08998 * 109.47238 * 180.02562 * 5 3 2 34 34 H 0.97000 * 119.99736 * 0.27056 * 11 9 8 35 35 H 1.08998 * 109.46795 * 299.99885 * 12 11 9 36 36 H 1.09002 * 109.47196 * 59.99076 * 12 11 9 37 37 H 1.09002 * 112.85247 * 45.32915 * 13 12 11 38 38 H 1.09004 * 113.61137 * 334.57230 * 14 13 12 39 39 H 1.09001 * 113.61262 * 105.46628 * 14 13 12 40 40 H 1.08999 * 113.74444 * 139.94325 * 15 14 13 41 41 H 0.97000 * 119.99712 * 72.50115 * 16 15 14 42 42 H 0.96993 * 119.99590 * 179.97438 * 20 19 17 43 43 H 1.08998 * 113.61159 * 220.09277 * 25 15 14 44 44 H 1.08995 * 113.61157 * 89.18677 * 25 15 14 45 45 H 1.08009 * 125.58360 * 180.24548 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3386 1.2638 -0.7104 7 7 3.7347 2.1303 -1.5749 8 6 4.9449 1.9170 -2.0983 9 6 5.5545 2.8028 -3.1044 10 8 6.6635 2.5568 -3.5393 11 7 4.8814 3.8832 -3.5474 12 6 5.4853 4.7610 -4.5528 13 6 4.5201 5.9023 -4.8792 14 6 3.4918 5.5476 -5.9663 15 6 3.7015 6.9704 -6.5157 16 7 2.8045 7.9649 -5.9220 17 6 1.7724 8.4823 -6.6583 18 1 1.6195 8.1570 -7.6767 19 6 0.9228 9.4250 -6.0958 20 7 -0.0695 9.9220 -6.8035 21 14 1.1870 9.9872 -4.3341 22 1 2.0952 11.1620 -4.3204 23 1 -0.1181 10.3634 -3.7336 24 1 1.7937 8.8832 -3.5479 25 6 5.0949 6.9320 -5.8663 26 6 5.5604 0.8150 -1.6136 27 16 4.5307 0.0640 -0.4744 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.2569 1.8014 1.9563 32 1 2.8830 1.0775 1.9563 33 1 2.6607 2.7673 1.4425 34 1 3.9970 4.0794 -3.2006 35 1 6.4166 5.1724 -4.1636 36 1 5.6909 4.1894 -5.4579 37 1 4.0778 6.3502 -3.9893 38 1 3.8270 4.7635 -6.6453 39 1 2.4886 5.3720 -5.5777 40 1 3.7283 7.0210 -7.6042 41 1 2.9416 8.2568 -5.0072 42 1 -0.6633 10.5804 -6.4103 43 1 5.3840 7.8724 -5.3972 44 1 5.8692 6.5271 -6.5179 45 1 6.5417 0.4661 -1.8998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091029653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -3.377202 kcal Electronic energy + Delta-G solvation = -26284.021405 eV Core-core repulsion = 22429.718044 eV Total energy + Delta-G solvation = -3854.303361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.78948 -39.39282 -38.72306 -38.16101 -34.78326 -33.23829 -32.96158 -30.71123 -30.06846 -28.09940 -27.34667 -25.80966 -25.16862 -24.07880 -23.13692 -21.73615 -21.40400 -20.14426 -19.18564 -18.38760 -17.68043 -16.88850 -16.84930 -16.58872 -15.98775 -15.73757 -15.52660 -15.07338 -14.62978 -14.49013 -14.32068 -13.95314 -13.57585 -13.50301 -13.40741 -13.17190 -12.82860 -12.75416 -12.50114 -12.23961 -12.18111 -12.04619 -11.58246 -11.57285 -11.36428 -10.92607 -10.52563 -10.47283 -10.35911 -10.22895 -10.18267 -9.98886 -9.96598 -9.67432 -9.54458 -9.34756 -9.00910 -8.91470 -7.31367 -5.81071 -3.17089 0.15672 0.86145 1.29946 1.62824 2.83152 3.17907 3.20126 3.33786 3.36753 3.41980 3.86669 4.31325 4.54831 4.54973 4.61398 4.82038 4.85952 4.90733 4.94897 4.95492 4.95761 5.09603 5.15379 5.23811 5.26150 5.38617 5.42145 5.49217 5.51704 5.61433 5.75555 5.85391 5.91511 6.12767 6.23334 6.32533 6.48664 6.51069 6.63486 6.73780 6.89786 7.00578 7.48740 7.97104 8.07510 8.38798 9.16573 9.88867 10.08227 11.37131 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.002616 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.501973 B =10698.859847 C =12592.598370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.162 3.838 4 H 0.096 0.904 5 C -0.170 4.170 6 C 0.019 3.981 7 N -0.435 5.435 8 C 0.011 3.989 9 C 0.592 3.408 10 O -0.540 6.540 11 N -0.705 5.705 12 C 0.130 3.870 13 C -0.124 4.124 14 C -0.167 4.167 15 C 0.173 3.827 16 N -0.730 5.730 17 C -0.246 4.246 18 H 0.092 0.908 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.148 4.148 26 C -0.232 4.232 27 S 0.252 5.748 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.411 0.589 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.437 -22.732 17.664 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.101 3.899 4 H 0.114 0.886 5 C -0.228 4.228 6 C -0.260 4.260 7 N -0.151 5.151 8 C -0.124 4.124 9 C 0.375 3.625 10 O -0.418 6.418 11 N -0.355 5.355 12 C 0.007 3.993 13 C -0.142 4.142 14 C -0.207 4.207 15 C 0.061 3.939 16 N -0.370 5.370 17 C -0.376 4.376 18 H 0.110 0.890 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.187 4.187 26 C -0.375 4.375 27 S 0.509 5.491 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.247 0.753 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.850 -23.381 17.621 30.312 hybrid contribution -0.166 1.356 0.780 1.573 sum 7.684 -22.026 18.401 29.711 Atomic orbital electron populations 1.22876 0.79538 1.03383 1.00701 1.87882 1.20858 1.26258 1.95137 1.20316 0.88308 0.86274 0.95043 0.88592 1.22303 1.03490 1.02501 0.94516 1.26743 1.02055 0.96603 1.00582 1.66844 1.12798 1.27136 1.08358 1.20401 0.91493 0.97927 1.02598 1.17044 0.84626 0.80430 0.80436 1.90810 1.19289 1.73148 1.58526 1.45893 1.21403 1.25834 1.42391 1.21540 0.96317 0.90487 0.90951 1.22757 0.97351 0.95673 0.98462 1.23887 0.98659 1.00582 0.97621 1.21039 0.88318 0.87967 0.96557 1.42523 1.33423 1.47690 1.13377 1.19118 1.03369 1.17728 0.97351 0.89017 1.24680 0.97540 0.99162 0.97678 1.69700 1.18877 1.33054 1.36345 0.86562 0.77174 0.78722 0.86135 1.21006 1.21674 1.20370 1.23456 0.99000 0.98146 0.98134 1.26768 1.07243 1.00127 1.03328 1.82914 1.05270 1.26248 1.34643 0.93289 0.89008 0.93455 0.90834 0.91303 0.90597 0.75326 0.91530 0.91141 0.89176 0.90944 0.91303 0.91015 0.80521 0.92992 0.91384 0.89935 0.79185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.03 10.17 -35.23 -0.36 -3.39 16 3 C 0.16 1.29 3.23 -27.88 -0.09 1.20 16 4 H 0.10 0.76 7.79 -51.93 -0.40 0.35 16 5 C -0.17 -1.03 9.51 37.16 0.35 -0.68 16 6 C 0.02 0.19 6.30 -13.61 -0.09 0.11 16 7 N -0.43 -5.20 10.12 -8.51 -0.09 -5.29 16 8 C 0.01 0.14 6.70 -84.52 -0.57 -0.42 16 9 C 0.59 8.54 7.80 -12.59 -0.10 8.44 16 10 O -0.54 -9.04 16.71 5.25 0.09 -8.96 16 11 N -0.71 -9.51 5.55 -61.44 -0.34 -9.85 16 12 C 0.13 1.74 5.50 -4.05 -0.02 1.72 16 13 C -0.12 -1.79 3.62 -89.81 -0.33 -2.11 16 14 C -0.17 -2.71 7.44 -25.83 -0.19 -2.90 16 15 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 16 N -0.73 -16.96 5.11 -52.55 -0.27 -17.23 16 17 C -0.25 -6.86 10.45 -15.06 -0.16 -7.02 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 21 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 25 C -0.15 -2.22 7.39 -25.92 -0.19 -2.41 16 26 C -0.23 -2.36 10.62 29.65 0.31 -2.05 16 27 S 0.25 2.02 22.73 -107.50 -2.44 -0.43 16 28 H 0.05 0.27 8.09 -51.93 -0.42 -0.15 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.19 7.87 -51.93 -0.41 -0.21 16 31 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.41 5.32 7.99 -40.82 -0.33 5.00 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.07 1.07 7.92 -51.93 -0.41 0.65 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 41 H 0.36 8.25 5.76 -40.82 -0.24 8.02 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.19 1.69 8.03 -52.48 -0.42 1.27 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -33.61 391.04 -8.66 -42.27 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.84 Total: 10.03 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.37 Total: -1.89 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.08 Total: -60.67 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.27 Total: -12.35 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.44 Total: -0.43 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.61 -8.66 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091029653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.894 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds