Wall clock time and date at job start Sat Apr 11 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00244 * 2 1 4 4 H 1.08995 * 109.46995 * 330.00004 * 3 2 1 5 5 C 1.53000 * 109.47253 * 90.00104 * 3 2 1 6 6 C 1.50699 * 109.46958 * 210.00075 * 3 2 1 7 7 N 1.28648 * 124.71679 * 135.28365 * 6 3 2 8 8 C 1.33569 * 115.76479 * 180.21788 * 7 6 3 9 9 C 1.47264 * 123.14280 * 179.75814 * 8 7 6 10 10 O 1.21633 * 119.99975 * 179.73296 * 9 8 7 11 11 N 1.34777 * 119.99990 * 359.45944 * 9 8 7 12 12 C 1.46499 * 120.00195 * 180.27783 * 11 9 8 13 13 C 1.52990 * 109.47304 * 179.97438 * 12 11 9 14 14 C 1.53788 * 113.61565 * 274.13358 * 13 12 11 15 15 C 1.53950 * 87.02023 * 220.05116 * 14 13 12 16 16 N 1.46501 * 113.53488 * 270.80566 * 15 14 13 17 17 C 1.36938 * 120.00379 * 252.49672 * 16 15 14 18 18 H 1.07995 * 119.99522 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99826 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99563 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00036 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46931 * 90.00281 * 21 19 17 23 23 H 1.48501 * 109.47160 * 209.99788 * 21 19 17 24 24 H 1.48491 * 109.47478 * 329.99996 * 21 19 17 25 25 C 1.53781 * 87.11440 * 25.36113 * 15 14 13 26 26 C 1.35203 * 113.71186 * 359.48882 * 8 7 6 27 27 S 1.70765 * 124.72199 * 314.97361 * 6 3 2 28 28 H 1.09002 * 109.47339 * 59.99847 * 1 2 3 29 29 H 1.08996 * 109.47512 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47063 * 300.00061 * 1 2 3 31 31 H 1.09001 * 109.46682 * 299.99929 * 5 3 2 32 32 H 1.08995 * 109.47202 * 60.00026 * 5 3 2 33 33 H 1.08998 * 109.47238 * 180.02562 * 5 3 2 34 34 H 0.97000 * 119.99736 * 0.27056 * 11 9 8 35 35 H 1.08998 * 109.46795 * 299.99885 * 12 11 9 36 36 H 1.09002 * 109.47196 * 59.99076 * 12 11 9 37 37 H 1.09002 * 112.85247 * 45.32915 * 13 12 11 38 38 H 1.09004 * 113.61137 * 334.57230 * 14 13 12 39 39 H 1.09001 * 113.61262 * 105.46628 * 14 13 12 40 40 H 1.08999 * 113.74444 * 139.94325 * 15 14 13 41 41 H 0.97000 * 119.99712 * 72.50115 * 16 15 14 42 42 H 0.96993 * 119.99590 * 179.97438 * 20 19 17 43 43 H 1.08998 * 113.61159 * 220.09277 * 25 15 14 44 44 H 1.08995 * 113.61157 * 89.18677 * 25 15 14 45 45 H 1.08009 * 125.58360 * 180.24548 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3386 1.2638 -0.7104 7 7 3.7347 2.1303 -1.5749 8 6 4.9449 1.9170 -2.0983 9 6 5.5545 2.8028 -3.1044 10 8 6.6635 2.5568 -3.5393 11 7 4.8814 3.8832 -3.5474 12 6 5.4853 4.7610 -4.5528 13 6 4.5201 5.9023 -4.8792 14 6 3.4918 5.5476 -5.9663 15 6 3.7015 6.9704 -6.5157 16 7 2.8045 7.9649 -5.9220 17 6 1.7724 8.4823 -6.6583 18 1 1.6195 8.1570 -7.6767 19 6 0.9228 9.4250 -6.0958 20 7 -0.0695 9.9220 -6.8035 21 14 1.1870 9.9872 -4.3341 22 1 2.0952 11.1620 -4.3204 23 1 -0.1181 10.3634 -3.7336 24 1 1.7937 8.8832 -3.5479 25 6 5.0949 6.9320 -5.8663 26 6 5.5604 0.8150 -1.6136 27 16 4.5307 0.0640 -0.4744 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.2569 1.8014 1.9563 32 1 2.8830 1.0775 1.9563 33 1 2.6607 2.7673 1.4425 34 1 3.9970 4.0794 -3.2006 35 1 6.4166 5.1724 -4.1636 36 1 5.6909 4.1894 -5.4579 37 1 4.0778 6.3502 -3.9893 38 1 3.8270 4.7635 -6.6453 39 1 2.4886 5.3720 -5.5777 40 1 3.7283 7.0210 -7.6042 41 1 2.9416 8.2568 -5.0072 42 1 -0.6633 10.5804 -6.4103 43 1 5.3840 7.8724 -5.3972 44 1 5.8692 6.5271 -6.5179 45 1 6.5417 0.4661 -1.8998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091029653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:45 Heat of formation + Delta-G solvation = -27.981047 kcal Electronic energy + Delta-G solvation = -26285.088308 eV Core-core repulsion = 22429.718044 eV Total energy + Delta-G solvation = -3855.370264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68438 -40.47422 -39.75192 -38.95862 -36.14821 -35.00351 -33.59236 -32.67375 -30.79332 -29.32154 -27.79861 -26.69724 -26.47372 -25.46112 -24.45254 -23.03451 -22.21986 -21.06524 -20.29250 -19.74239 -19.49160 -17.84437 -17.46430 -17.29190 -16.91198 -16.72759 -16.54003 -16.32518 -16.09591 -15.67506 -15.36928 -15.06178 -14.79930 -14.67649 -14.60787 -14.08194 -14.02129 -13.66889 -13.39816 -13.30206 -13.11750 -13.03622 -12.96725 -12.71739 -12.65352 -12.20855 -12.08152 -11.90348 -11.71997 -11.62603 -11.29275 -11.01482 -10.97044 -10.89915 -10.84454 -10.67612 -10.27246 -9.91695 -9.30871 -8.03757 -5.37346 -0.60802 0.16554 0.55667 0.74273 1.36482 1.40234 1.47175 2.07292 2.19263 2.35272 2.47033 3.20395 3.26446 3.49918 3.57359 3.71512 3.77973 3.96988 4.00460 4.03473 4.08245 4.20752 4.25275 4.34922 4.49124 4.55627 4.60280 4.67619 4.70248 4.74356 4.83478 4.89476 4.90995 4.94576 5.06610 5.17635 5.20067 5.29230 5.42477 5.52022 5.79650 5.99300 6.18226 6.21830 6.49443 7.02093 7.06687 7.83566 8.02132 9.17870 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.002616 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.501973 B =10698.859847 C =12592.598370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.160 3.840 4 H 0.091 0.909 5 C -0.166 4.166 6 C 0.002 3.998 7 N -0.456 5.456 8 C -0.016 4.016 9 C 0.590 3.410 10 O -0.570 6.570 11 N -0.703 5.703 12 C 0.137 3.863 13 C -0.107 4.107 14 C -0.157 4.157 15 C 0.147 3.853 16 N -0.734 5.734 17 C -0.232 4.232 18 H 0.057 0.943 19 C -0.065 4.065 20 N -0.984 5.984 21 Si 0.955 3.045 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.252 1.252 25 C -0.130 4.130 26 C -0.237 4.237 27 S 0.324 5.676 28 H 0.044 0.956 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.366 0.634 42 H 0.258 0.742 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.748 -24.354 20.244 32.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.099 3.901 4 H 0.109 0.891 5 C -0.224 4.224 6 C -0.277 4.277 7 N -0.173 5.173 8 C -0.152 4.152 9 C 0.374 3.626 10 O -0.450 6.450 11 N -0.353 5.353 12 C 0.014 3.986 13 C -0.126 4.126 14 C -0.197 4.197 15 C 0.037 3.963 16 N -0.376 5.376 17 C -0.363 4.363 18 H 0.075 0.925 19 C -0.256 4.256 20 N -0.635 5.635 21 Si 0.782 3.218 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.176 1.176 25 C -0.169 4.169 26 C -0.380 4.380 27 S 0.582 5.418 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.249 0.751 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.128 0.872 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 9.193 -25.051 20.216 33.477 hybrid contribution -0.587 1.707 -0.095 1.808 sum 8.606 -23.344 20.121 31.997 Atomic orbital electron populations 1.23048 0.78322 1.04443 1.01222 1.87846 1.22196 1.26178 1.95259 1.20396 0.87480 0.86371 0.95818 0.89075 1.22286 1.04462 1.02272 0.93382 1.27161 1.03317 0.96976 1.00267 1.66811 1.12828 1.28370 1.09328 1.20238 0.92458 0.98857 1.03623 1.17312 0.84276 0.80516 0.80470 1.90780 1.20494 1.73957 1.59790 1.45885 1.21433 1.25714 1.42230 1.21441 0.96016 0.90005 0.91127 1.22580 0.96612 0.95728 0.97664 1.23755 0.98402 0.99138 0.98401 1.21371 0.90238 0.88416 0.96233 1.42453 1.33109 1.48699 1.13303 1.19074 1.04113 1.16876 0.96280 0.92508 1.25513 0.97564 0.99928 1.02588 1.69886 1.20485 1.34404 1.38681 0.85408 0.76920 0.78882 0.80558 1.20394 1.22224 1.17619 1.23348 0.97032 0.98578 0.97917 1.27049 1.07952 0.99606 1.03362 1.82656 1.02915 1.23928 1.32320 0.93710 0.87726 0.92025 0.89371 0.90749 0.90983 0.75055 0.90924 0.90969 0.89601 0.89077 0.93265 0.92171 0.80015 0.93305 0.91182 0.87207 0.78259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 113.37 1.23 1.46 16 2 O -0.40 -5.56 10.17 -148.98 -1.52 -7.07 16 3 C 0.16 2.31 3.23 29.85 0.10 2.41 16 4 H 0.09 1.37 7.79 -2.39 -0.02 1.35 16 5 C -0.17 -1.69 9.51 71.98 0.68 -1.00 16 6 C 0.00 0.03 6.30 88.57 0.56 0.59 16 7 N -0.46 -10.51 10.12 -180.84 -1.83 -12.34 16 8 C -0.02 -0.39 6.70 40.55 0.27 -0.12 16 9 C 0.59 16.55 7.80 86.62 0.68 17.23 16 10 O -0.57 -18.67 16.71 -4.14 -0.07 -18.74 16 11 N -0.70 -18.12 5.55 -466.54 -2.59 -20.71 16 12 C 0.14 3.38 5.50 86.38 0.47 3.86 16 13 C -0.11 -2.87 3.62 -10.27 -0.04 -2.91 16 14 C -0.16 -4.90 7.44 31.18 0.23 -4.66 16 15 C 0.15 5.39 4.57 45.58 0.21 5.59 16 16 N -0.73 -33.76 5.11 -320.17 -1.64 -35.40 16 17 C -0.23 -13.24 10.45 84.03 0.88 -12.37 16 18 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 19 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 20 N -0.98 -63.24 13.97 21.65 0.30 -62.94 16 21 Si 0.96 45.22 27.74 68.60 1.90 47.12 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 24 H -0.25 -10.69 6.52 99.48 0.65 -10.04 16 25 C -0.13 -3.57 7.39 31.12 0.23 -3.34 16 26 C -0.24 -4.47 10.62 67.12 0.71 -3.75 16 27 S 0.32 4.47 22.73 -56.49 -1.28 3.19 16 28 H 0.04 0.44 8.09 -2.39 -0.02 0.42 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.38 7.87 -2.39 -0.02 0.36 16 31 H 0.09 0.63 7.87 -2.39 -0.02 0.61 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.41 10.31 7.99 -92.71 -0.74 9.57 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.79 7.87 -2.39 -0.02 1.77 16 37 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.09 2.52 7.92 -2.38 -0.02 2.50 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 41 H 0.37 16.09 5.76 -92.71 -0.53 15.56 16 42 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.11 2.48 8.10 -2.39 -0.02 2.46 16 45 H 0.20 3.24 8.03 -2.91 -0.02 3.22 16 Total: -1.00 -74.02 391.04 -0.36 -74.38 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.32 Total: 32.88 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 6.68 Total: -0.36 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -5.75 Total: -131.39 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -1.58 Total: -25.81 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.28 Total: 3.19 kcal Total: -74.02 -0.36 -74.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091029653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.396 kcal (2) G-P(sol) polarization free energy of solvation -74.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds