Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.53004 * 109.47119 * 175.00007 * 4 2 1 6 6 H 1.09010 * 109.46973 * 54.99890 * 5 4 2 7 7 C 1.52996 * 109.47071 * 174.99759 * 5 4 2 8 8 N 1.46500 * 109.46893 * 295.00224 * 5 4 2 9 9 C 1.34781 * 119.99674 * 155.00206 * 8 5 4 10 10 O 1.21694 * 120.00358 * 359.97438 * 9 8 5 11 11 C 1.46580 * 119.99800 * 179.97438 * 9 8 5 12 12 C 1.36645 * 125.46338 * 179.97438 * 11 9 8 13 13 C 1.37470 * 113.30120 * 179.97438 * 12 11 9 14 14 C 1.33808 * 115.10012 * 0.02562 * 13 12 11 15 15 S 1.70611 * 110.95655 * 359.76004 * 14 13 12 16 16 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 17 17 C 1.46901 * 110.99793 * 275.00325 * 16 2 1 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 2 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00215 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47177 * 89.99959 * 25 23 21 27 27 H 1.48505 * 109.47036 * 210.00243 * 25 23 21 28 28 H 1.48499 * 109.46776 * 329.99732 * 25 23 21 29 29 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 30 30 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 31 31 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 33 33 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 34 34 H 1.09004 * 109.46810 * 180.02562 * 7 5 4 35 35 H 1.08992 * 109.47414 * 299.99823 * 7 5 4 36 36 H 1.09001 * 109.46880 * 60.00294 * 7 5 4 37 37 H 0.96996 * 120.00172 * 334.99519 * 8 5 4 38 38 H 1.07998 * 123.34634 * 359.94414 * 12 11 9 39 39 H 1.07999 * 122.44461 * 180.02562 * 13 12 11 40 40 H 1.08006 * 124.52273 * 179.97438 * 14 13 12 41 41 H 1.00899 * 110.99995 * 151.04723 * 16 2 1 42 42 H 1.09002 * 109.47401 * 59.99808 * 17 16 2 43 43 H 1.09001 * 109.46874 * 299.99821 * 17 16 2 44 44 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 45 45 H 0.96996 * 119.99520 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3867 7 6 4.0852 -1.4384 -2.4923 8 7 3.9479 0.7894 -1.4924 9 6 5.1612 1.2135 -1.0866 10 8 5.9383 0.4315 -0.5714 11 6 5.5447 2.6169 -1.2660 12 6 6.7407 3.1652 -0.8970 13 6 6.8352 4.5065 -1.1832 14 6 5.7552 5.0401 -1.7657 15 16 4.5419 3.8631 -1.9960 16 7 2.0196 -0.6925 1.1995 17 6 2.0823 0.2227 2.3469 18 6 2.5872 -0.5217 3.5561 19 8 2.8677 -1.6987 3.4703 20 7 2.7280 0.1207 4.7326 21 6 3.1878 -0.5564 5.8325 22 1 3.4368 -1.6046 5.7562 23 6 3.3325 0.1056 7.0454 24 7 3.7728 -0.5435 8.0999 25 14 2.9013 1.9184 7.1774 26 1 1.4719 2.0610 7.5535 27 1 3.7521 2.5554 8.2145 28 1 3.1372 2.5797 5.8689 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7516 -1.7715 -1.2055 33 1 1.6054 -0.2618 -2.1369 34 1 5.1716 -1.3618 -2.5379 35 1 3.8002 -2.4819 -2.3593 36 1 3.6546 -1.0594 -3.4192 37 1 3.3284 1.4128 -1.9028 38 1 7.5326 2.6011 -0.4269 39 1 7.7168 5.0870 -0.9545 40 1 5.6651 6.0768 -2.0549 41 1 2.9173 -1.1205 1.0288 42 1 1.0869 0.6164 2.5525 43 1 2.7587 1.0463 2.1182 44 1 2.5041 1.0619 4.8010 45 1 3.8741 -0.0812 8.9465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133580297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -38.652764 kcal Electronic energy + Delta-G solvation = -27153.231661 eV Core-core repulsion = 23297.398636 eV Total energy + Delta-G solvation = -3855.833024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.20844 -38.65277 -37.99495 -37.20063 -35.08476 -33.88308 -32.09524 -31.59608 -30.75312 -29.65000 -27.16082 -26.30480 -25.35870 -23.71482 -22.52100 -21.22447 -20.28497 -19.57269 -19.34054 -18.91508 -18.28327 -16.59210 -16.29760 -16.20514 -15.62031 -15.33735 -15.21708 -15.06687 -14.67429 -14.04754 -13.99064 -13.74577 -13.48856 -13.19060 -13.10910 -12.90241 -12.70999 -12.68716 -12.53572 -12.27574 -12.22549 -12.06872 -11.95836 -11.74250 -11.38494 -11.31227 -11.14706 -11.00438 -10.64216 -10.55217 -10.22451 -9.92513 -9.51854 -9.42423 -9.16729 -8.95613 -8.51079 -8.14166 -8.08923 -6.25913 -3.76840 0.17991 1.10704 1.50117 2.09599 2.85609 3.00966 3.06356 3.10021 3.17812 3.80546 4.12403 4.15968 4.37585 4.55297 4.64196 4.70465 4.88094 4.93968 4.97527 5.15014 5.20169 5.26282 5.31061 5.35387 5.47886 5.56021 5.61087 5.65930 5.70505 5.76384 5.80178 5.87395 5.90981 5.98038 5.98915 6.01708 6.03036 6.25726 6.30033 7.17375 7.19482 7.62715 7.64375 7.95280 8.20371 8.65574 9.00615 9.48129 9.88970 10.87427 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.003415 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.514726 B = 8197.388244 C = 9883.736955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.041 0.959 4 C -0.129 4.129 5 C 0.135 3.865 6 H 0.096 0.904 7 C -0.161 4.161 8 N -0.722 5.722 9 C 0.588 3.412 10 O -0.518 6.518 11 C -0.264 4.264 12 C -0.055 4.055 13 C -0.148 4.148 14 C -0.229 4.229 15 S 0.193 5.807 16 N -0.662 5.662 17 C 0.049 3.951 18 C 0.452 3.548 19 O -0.563 6.563 20 N -0.592 5.592 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.395 0.605 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.169 0.831 41 H 0.350 0.650 42 H 0.086 0.914 43 H 0.041 0.959 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 13.072 -26.390 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 H 0.059 0.941 4 C -0.167 4.167 5 C 0.031 3.969 6 H 0.114 0.886 7 C -0.219 4.219 8 N -0.374 5.374 9 C 0.374 3.626 10 O -0.395 6.395 11 C -0.384 4.384 12 C -0.088 4.088 13 C -0.179 4.179 14 C -0.367 4.367 15 S 0.459 5.541 16 N -0.297 5.297 17 C -0.084 4.084 18 C 0.237 3.763 19 O -0.444 6.444 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.523 5.523 25 Si 0.705 3.295 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.229 0.771 38 H 0.173 0.827 39 H 0.164 0.836 40 H 0.187 0.813 41 H 0.172 0.828 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.202 0.798 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.957 11.459 -26.297 28.837 hybrid contribution 1.695 2.620 0.576 3.174 sum -1.262 14.080 -25.721 29.350 Atomic orbital electron populations 1.21795 0.94409 1.02603 1.00959 1.21555 0.96054 0.95790 0.89548 0.94122 1.22120 0.93227 1.03414 0.97982 1.21161 0.95126 0.80250 1.00400 0.88623 1.22148 1.02048 1.00227 0.97516 1.45975 1.16375 1.11694 1.63330 1.16968 0.81980 0.85543 0.78105 1.90889 1.50884 1.54891 1.42833 1.24683 1.00982 0.98151 1.14606 1.20880 0.96498 0.94337 0.97067 1.20092 1.00183 0.94887 1.02749 1.25311 0.98926 1.05038 1.07428 1.82899 1.17512 0.97860 1.55831 1.60220 1.34997 1.31819 1.02696 1.21730 1.01050 0.94046 0.91550 1.19711 0.84388 0.88228 0.83958 1.90563 1.53659 1.15874 1.84340 1.42199 1.60320 1.10969 1.09641 1.19440 1.40103 0.97941 0.85684 0.86270 1.25022 0.97561 0.98311 0.95251 1.69626 1.45354 1.36513 1.00782 0.86684 0.79273 0.85121 0.78403 1.19607 1.20191 1.19590 0.92615 0.92946 0.91718 0.88768 0.90646 0.91966 0.91049 0.92502 0.77077 0.82699 0.83564 0.81345 0.82800 0.89582 0.94103 0.79785 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.41 37.15 0.35 -1.07 16 2 C 0.08 0.91 2.59 -67.71 -0.18 0.73 16 3 H 0.04 0.45 7.28 -51.93 -0.38 0.07 16 4 C -0.13 -1.15 4.35 -26.73 -0.12 -1.27 16 5 C 0.13 1.42 2.48 -67.93 -0.17 1.25 16 6 H 0.10 1.33 5.72 -51.92 -0.30 1.04 16 7 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 8 N -0.72 -7.28 4.44 -55.14 -0.25 -7.52 16 9 C 0.59 7.66 7.75 -12.89 -0.10 7.56 16 10 O -0.52 -8.91 16.50 5.19 0.09 -8.82 16 11 C -0.26 -2.87 6.45 -36.79 -0.24 -3.11 16 12 C -0.05 -0.57 10.01 -40.44 -0.40 -0.98 16 13 C -0.15 -1.20 10.15 -41.42 -0.42 -1.62 16 14 C -0.23 -1.61 10.92 29.18 0.32 -1.29 16 15 S 0.19 1.41 22.16 -107.50 -2.38 -0.97 16 16 N -0.66 -10.50 5.93 -107.99 -0.64 -11.14 16 17 C 0.05 0.86 5.97 -4.97 -0.03 0.84 16 18 C 0.45 10.78 7.82 -10.98 -0.09 10.69 16 19 O -0.56 -15.75 15.78 5.55 0.09 -15.66 16 20 N -0.59 -14.74 5.09 -10.96 -0.06 -14.79 16 21 C -0.30 -8.87 10.16 -14.94 -0.15 -9.02 16 22 H 0.12 3.98 7.39 -52.49 -0.39 3.59 16 23 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 24 N -0.88 -26.42 13.96 55.50 0.77 -25.65 16 25 Si 0.88 19.97 27.74 -169.99 -4.71 15.25 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 28 H -0.27 -5.66 6.52 56.52 0.37 -5.29 16 29 H 0.05 0.61 7.45 -51.93 -0.39 0.23 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.39 2.98 7.72 -40.82 -0.31 2.67 16 38 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.35 6.04 6.12 -39.29 -0.24 5.80 16 42 H 0.09 1.35 7.44 -51.93 -0.39 0.96 16 43 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 44 H 0.37 8.13 5.76 -40.82 -0.24 7.89 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -36.00 387.77 -8.65 -44.65 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -6.44 Total: 16.18 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.97 Total: 2.63 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.17 Total: -59.11 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.17 Total: -24.48 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.71 Total: 15.25 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.38 Total: -0.97 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.00 -8.65 -44.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133580297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.001 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds