Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 C 1.52995 * 109.47240 * 240.00076 * 2 1 3 5 5 C 1.53007 * 109.47093 * 174.99783 * 4 2 1 6 6 H 1.08996 * 109.46972 * 304.99617 * 5 4 2 7 7 C 1.53004 * 109.46909 * 185.00035 * 5 4 2 8 8 N 1.46501 * 109.47006 * 65.00287 * 5 4 2 9 9 C 1.34778 * 119.99776 * 204.99816 * 8 5 4 10 10 O 1.21696 * 119.99934 * 359.97438 * 9 8 5 11 11 C 1.46581 * 119.99600 * 179.97438 * 9 8 5 12 12 C 1.36654 * 125.45438 * 179.97438 * 11 9 8 13 13 C 1.37466 * 113.29493 * 179.97438 * 12 11 9 14 14 C 1.33820 * 115.10360 * 0.02562 * 13 12 11 15 15 S 1.70614 * 110.95273 * 359.76282 * 14 13 12 16 16 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 17 17 C 1.46902 * 110.99800 * 274.99934 * 16 2 1 18 18 C 1.50706 * 109.46577 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00224 * 359.72334 * 18 17 16 20 20 N 1.34777 * 119.99766 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99970 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99992 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00025 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99899 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00157 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47057 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47025 * 119.99856 * 25 23 21 28 28 H 1.48492 * 109.46854 * 240.00012 * 25 23 21 29 29 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 30 30 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 32 32 H 1.09001 * 109.47077 * 294.99883 * 4 2 1 33 33 H 1.09003 * 109.46883 * 55.00222 * 4 2 1 34 34 H 1.09005 * 109.47225 * 300.00351 * 7 5 4 35 35 H 1.09003 * 109.47224 * 59.99817 * 7 5 4 36 36 H 1.08992 * 109.46930 * 180.02562 * 7 5 4 37 37 H 0.96999 * 119.99848 * 24.99852 * 8 5 4 38 38 H 1.07996 * 123.34731 * 359.94374 * 12 11 9 39 39 H 1.08002 * 122.44616 * 180.02562 * 13 12 11 40 40 H 1.07999 * 124.52313 * 180.02562 * 14 13 12 41 41 H 1.00891 * 110.99988 * 38.95349 * 16 2 1 42 42 H 1.09000 * 109.47263 * 60.00269 * 17 16 2 43 43 H 1.09001 * 109.47582 * 299.99548 * 17 16 2 44 44 H 0.96999 * 120.00043 * 0.02562 * 20 18 17 45 45 H 0.97005 * 120.00019 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.8570 0.4359 -1.2678 7 6 4.0646 -1.2249 -2.6241 8 7 4.1538 -1.3341 -0.1824 9 6 5.3749 -0.9910 0.2733 10 8 5.9884 -0.0826 -0.2552 11 6 5.9638 -1.7120 1.4056 12 6 7.1888 -1.4589 1.9558 13 6 7.4926 -2.2867 3.0103 14 6 6.5509 -3.1876 3.3145 15 16 5.2047 -3.0369 2.2773 16 7 2.0197 -0.6925 1.1995 17 6 2.0825 0.2226 2.3469 18 6 2.5886 -0.5215 3.5557 19 8 2.8645 -1.6996 3.4711 20 7 2.7297 0.1208 4.7321 21 6 3.1896 -0.5563 5.8320 22 1 3.4392 -1.6043 5.7556 23 6 3.3347 0.1058 7.0450 24 7 3.0305 1.3809 7.1381 25 14 3.9620 -0.8165 8.5434 26 1 4.2303 -2.2306 8.1777 27 1 5.2154 -0.1830 9.0257 28 1 2.9382 -0.7694 9.6180 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6054 -0.2616 -2.1369 34 1 3.7723 -2.2740 -2.6700 35 1 3.6264 -0.6886 -3.4658 36 1 5.1508 -1.1484 -2.6698 37 1 3.6648 -2.0584 0.2386 38 1 7.8522 -0.6858 1.5974 39 1 8.4233 -2.2153 3.5535 40 1 6.6306 -3.9105 4.1129 41 1 1.4496 -1.4978 1.4101 42 1 1.0871 0.6163 2.5526 43 1 2.7589 1.0462 2.1183 44 1 2.5052 1.0619 4.8009 45 1 3.1321 1.8432 7.9848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133580298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = -41.645178 kcal Electronic energy + Delta-G solvation = -28405.825010 eV Core-core repulsion = 24549.862225 eV Total energy + Delta-G solvation = -3855.962785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.56944 -38.39738 -37.40587 -36.69656 -34.78558 -33.83372 -31.80066 -31.18145 -30.31166 -28.89572 -26.89584 -26.17500 -24.59010 -23.91241 -21.96875 -20.82943 -20.37214 -19.20698 -18.78904 -18.09182 -17.86047 -16.19072 -16.03687 -15.34753 -15.27053 -14.87204 -14.77698 -14.61508 -14.26702 -14.02437 -13.75991 -13.52808 -13.24819 -13.06078 -12.72610 -12.52022 -12.29966 -12.28267 -12.13587 -12.12449 -11.94333 -11.66871 -11.55083 -11.39995 -11.26685 -11.06012 -10.81048 -10.71266 -10.36571 -10.32441 -10.21209 -9.58652 -9.49373 -8.81048 -8.41615 -8.30306 -8.05322 -7.94578 -7.75976 -6.39804 -3.79365 1.05376 2.08157 2.46828 2.87936 3.15768 3.26161 3.31518 3.53394 3.76907 3.95219 4.10341 4.34409 4.59104 4.95224 5.14804 5.18986 5.24642 5.29044 5.31772 5.40523 5.44562 5.48854 5.53958 5.71392 5.73160 5.77462 5.80527 5.83134 5.90352 5.92350 6.05486 6.09482 6.14838 6.27612 6.31045 6.39688 6.66367 6.78756 6.88143 7.21538 7.56354 7.65308 7.97560 8.08033 8.63413 8.65357 9.20004 9.57782 10.08154 10.78282 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.004752 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.346034 B = 5891.365706 C = 7759.063029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.081 3.919 3 H 0.077 0.923 4 C -0.115 4.115 5 C 0.153 3.847 6 H 0.083 0.917 7 C -0.164 4.164 8 N -0.691 5.691 9 C 0.599 3.401 10 O -0.555 6.555 11 C -0.277 4.277 12 C -0.072 4.072 13 C -0.160 4.160 14 C -0.251 4.251 15 S 0.297 5.703 16 N -0.659 5.659 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.571 6.571 20 N -0.565 5.565 21 C -0.291 4.291 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.925 3.075 26 H -0.269 1.269 27 H -0.282 1.282 28 H -0.283 1.283 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.405 0.595 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.160 0.840 41 H 0.346 0.654 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.390 0.610 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 -5.573 -15.005 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.154 4.154 5 C 0.048 3.952 6 H 0.101 0.899 7 C -0.223 4.223 8 N -0.342 5.342 9 C 0.386 3.614 10 O -0.436 6.436 11 C -0.399 4.399 12 C -0.107 4.107 13 C -0.192 4.192 14 C -0.390 4.390 15 S 0.568 5.432 16 N -0.291 5.291 17 C -0.082 4.082 18 C 0.227 3.773 19 O -0.455 6.455 20 N -0.202 5.202 21 C -0.421 4.421 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.752 3.248 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.209 1.209 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.177 0.823 41 H 0.166 0.834 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.223 0.777 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.597 -6.326 -15.542 16.856 hybrid contribution 0.372 0.968 1.868 2.136 sum -1.225 -5.358 -13.674 14.737 Atomic orbital electron populations 1.22507 0.97387 1.02105 1.02081 1.21628 0.92199 0.98311 0.90844 0.90460 1.21930 0.94469 1.01559 0.97423 1.20750 0.91963 0.97323 0.85199 0.89922 1.22216 1.02156 1.00906 0.96997 1.45679 1.17238 1.37742 1.33591 1.16895 0.81106 0.82180 0.81261 1.90747 1.62348 1.30911 1.59585 1.24626 1.01112 1.08327 1.05803 1.20557 0.95226 0.99554 0.95331 1.19825 1.01449 0.97905 0.99999 1.25380 0.99831 1.06304 1.07441 1.83266 1.13772 1.25407 1.20791 1.60244 1.57018 1.09221 1.02630 1.21679 0.99645 0.95802 0.91052 1.19762 0.85109 0.88433 0.84003 1.90486 1.54893 1.15637 1.84477 1.41853 1.57895 1.12410 1.08013 1.19669 1.39571 0.96260 0.86620 0.87949 1.25226 0.97852 0.95719 0.99204 1.69619 1.48932 1.08850 1.26966 0.85871 0.78297 0.79577 0.81016 1.19331 1.20818 1.20879 0.92324 0.92409 0.92569 0.91225 0.90354 0.92661 0.92024 0.92120 0.75773 0.84063 0.84814 0.82253 0.83418 0.94118 0.90145 0.77688 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.16 37.16 0.34 -1.35 16 2 C 0.08 0.87 2.59 -67.71 -0.18 0.69 16 3 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 4 C -0.12 -1.07 4.54 -26.73 -0.12 -1.19 16 5 C 0.15 1.81 2.57 -67.92 -0.17 1.63 16 6 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 7 C -0.16 -1.70 9.48 37.16 0.35 -1.34 16 8 N -0.69 -9.81 3.79 -55.14 -0.21 -10.02 16 9 C 0.60 10.55 7.75 -12.90 -0.10 10.45 16 10 O -0.56 -11.20 16.50 5.19 0.09 -11.12 16 11 C -0.28 -4.89 6.45 -36.79 -0.24 -5.13 16 12 C -0.07 -1.24 10.01 -40.44 -0.40 -1.65 16 13 C -0.16 -2.56 10.15 -41.41 -0.42 -2.98 16 14 C -0.25 -4.01 10.92 29.18 0.32 -3.69 16 15 S 0.30 4.84 20.25 -107.50 -2.18 2.67 16 16 N -0.66 -8.94 3.48 -107.98 -0.38 -9.32 16 17 C 0.05 0.84 5.97 -4.97 -0.03 0.81 16 18 C 0.44 9.47 7.82 -10.98 -0.09 9.39 16 19 O -0.57 -12.86 13.83 5.55 0.08 -12.78 16 20 N -0.57 -13.74 5.29 -10.96 -0.06 -13.80 16 21 C -0.29 -7.82 9.68 -14.93 -0.14 -7.96 16 22 H 0.10 2.85 7.16 -52.49 -0.38 2.48 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 25 Si 0.92 20.91 29.55 -169.99 -5.02 15.88 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.41 5.58 6.71 -40.82 -0.27 5.30 16 38 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.16 2.22 8.06 -52.49 -0.42 1.79 16 41 H 0.35 4.75 8.17 -39.30 -0.32 4.43 16 42 H 0.04 0.62 7.44 -51.93 -0.39 0.24 16 43 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 44 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -30.38 387.37 -8.74 -39.12 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -6.64 Total: 19.19 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.98 Total: -1.85 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.08 Total: -56.95 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: 0.16 Total: -23.89 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -2.18 Total: 2.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.38 -8.74 -39.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133580298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.525 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds