Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 H 1.08995 * 109.47088 * 304.99742 * 5 4 2 7 7 C 1.52995 * 109.46962 * 184.99665 * 5 4 2 8 8 N 1.46498 * 109.47226 * 64.99655 * 5 4 2 9 9 C 1.34777 * 120.00434 * 205.00103 * 8 5 4 10 10 O 1.21700 * 119.99364 * 359.97438 * 9 8 5 11 11 C 1.46581 * 120.00286 * 180.02562 * 9 8 5 12 12 C 1.36641 * 125.45651 * 179.97438 * 11 9 8 13 13 C 1.37475 * 113.29675 * 179.97438 * 12 11 9 14 14 C 1.33809 * 115.09933 * 0.02562 * 13 12 11 15 15 S 1.70610 * 110.95769 * 359.75924 * 14 13 12 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47090 * 89.99727 * 25 23 21 27 27 H 1.48497 * 109.47239 * 210.00393 * 25 23 21 28 28 H 1.48506 * 109.46789 * 329.99864 * 25 23 21 29 29 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 30 30 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 31 31 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 33 33 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 34 34 H 1.08996 * 109.47644 * 60.00122 * 7 5 4 35 35 H 1.09003 * 109.47072 * 180.02562 * 7 5 4 36 36 H 1.09005 * 109.47249 * 299.99896 * 7 5 4 37 37 H 0.97004 * 120.00032 * 24.99710 * 8 5 4 38 38 H 1.08005 * 123.35145 * 359.94522 * 12 11 9 39 39 H 1.08007 * 122.44770 * 180.02562 * 13 12 11 40 40 H 1.08004 * 124.51836 * 179.97438 * 14 13 12 41 41 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 42 42 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 43 43 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 44 44 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 45 45 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 1 3.9953 -0.9924 0.3867 7 6 4.0850 -1.4386 2.4923 8 7 3.9480 0.7891 1.4924 9 6 5.1612 1.2134 1.0867 10 8 5.9386 0.4310 0.5722 11 6 5.5448 2.6167 1.2662 12 6 6.7411 3.1647 0.8981 13 6 6.8353 4.5062 1.1831 14 6 5.7550 5.0401 1.7649 15 16 4.5368 3.8659 1.9838 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.0264 1.3802 -7.1389 25 14 3.9564 -0.8175 -8.5448 26 1 2.8071 -1.4006 -9.2825 27 1 4.6902 0.1200 -9.4325 28 1 4.8694 -1.9053 -8.1109 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7717 1.2055 34 1 3.8000 -2.4821 2.3593 35 1 5.1713 -1.3613 2.5385 36 1 3.6545 -1.0596 3.4193 37 1 3.3285 1.4127 1.9028 38 1 7.5341 2.5999 0.4303 39 1 7.7168 5.0868 0.9542 40 1 5.6649 6.0769 2.0538 41 1 2.9172 -1.1206 -1.0288 42 1 1.0870 0.6165 -2.5525 43 1 2.7588 1.0462 -2.1182 44 1 2.5033 1.0618 -4.8013 45 1 3.1264 1.8422 -7.9861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133580299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -45.912883 kcal Electronic energy + Delta-G solvation = -27076.288969 eV Core-core repulsion = 23220.141122 eV Total energy + Delta-G solvation = -3856.147847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15474 -38.51228 -37.89357 -37.10881 -35.01048 -33.82305 -32.02173 -31.18325 -30.61883 -29.59685 -27.07963 -26.13996 -25.30553 -23.88558 -22.47707 -21.16963 -20.21988 -19.51805 -19.22800 -18.82409 -17.82707 -16.53774 -16.27442 -16.14665 -15.56172 -15.28129 -15.08540 -15.00869 -14.40116 -13.94971 -13.90185 -13.82241 -13.58781 -13.22255 -13.05656 -12.90005 -12.65201 -12.60739 -12.39982 -12.20086 -12.08089 -11.81353 -11.72770 -11.48546 -11.32903 -11.20415 -11.04427 -10.91485 -10.56806 -10.34589 -10.17625 -10.15798 -9.44808 -9.37343 -9.11349 -8.90011 -8.37169 -8.00424 -7.89302 -6.35800 -3.76180 0.23472 1.16224 1.55619 2.14927 2.90648 3.06260 3.22407 3.30334 3.37019 3.98027 4.15024 4.37121 4.43932 4.60645 4.69779 4.76252 4.98263 5.02683 5.15377 5.20130 5.25736 5.31057 5.39618 5.40652 5.52524 5.62667 5.66534 5.74866 5.79019 5.84924 5.87778 5.96022 6.03650 6.04223 6.05554 6.10387 6.28463 6.32233 6.40133 7.24233 7.30812 7.61041 7.73074 8.00270 8.12772 8.67916 9.24174 9.60931 10.12777 10.82151 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009519 B = 0.003119 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.699884 B = 8974.070965 C =10562.172847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.041 0.959 4 C -0.129 4.129 5 C 0.135 3.865 6 H 0.096 0.904 7 C -0.161 4.161 8 N -0.721 5.721 9 C 0.589 3.411 10 O -0.519 6.519 11 C -0.264 4.264 12 C -0.055 4.055 13 C -0.148 4.148 14 C -0.229 4.229 15 S 0.193 5.807 16 N -0.662 5.662 17 C 0.052 3.948 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.395 0.605 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.169 0.831 41 H 0.349 0.651 42 H 0.085 0.915 43 H 0.040 0.960 44 H 0.391 0.609 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 8.754 23.813 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.059 0.941 4 C -0.167 4.167 5 C 0.031 3.969 6 H 0.114 0.886 7 C -0.219 4.219 8 N -0.373 5.373 9 C 0.375 3.625 10 O -0.396 6.396 11 C -0.384 4.384 12 C -0.088 4.088 13 C -0.179 4.179 14 C -0.367 4.367 15 S 0.460 5.540 16 N -0.297 5.297 17 C -0.081 4.081 18 C 0.228 3.772 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.229 0.771 38 H 0.173 0.827 39 H 0.164 0.836 40 H 0.187 0.813 41 H 0.170 0.830 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.225 0.775 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.222 7.286 23.770 24.892 hybrid contribution 2.118 1.383 -1.102 2.759 sum 0.896 8.669 22.668 24.286 Atomic orbital electron populations 1.21795 0.94474 1.02506 1.00974 1.21547 0.96023 0.95806 0.89575 0.94141 1.22120 0.93209 1.03356 0.98048 1.21151 0.95151 0.80263 1.00343 0.88644 1.22149 1.02020 1.00200 0.97552 1.45968 1.16373 1.11682 1.63310 1.16965 0.81971 0.85550 0.78048 1.90883 1.50927 1.54904 1.42904 1.24674 1.00870 0.98091 1.14768 1.20873 0.96564 0.94332 0.97020 1.20089 1.00245 0.94886 1.02702 1.25308 0.98851 1.05072 1.07476 1.82897 1.16921 0.97839 1.56348 1.60229 1.34858 1.31937 1.02713 1.21690 1.01000 0.93922 0.91458 1.19810 0.84787 0.88203 0.84410 1.90518 1.55164 1.16147 1.84740 1.41853 1.57926 1.12377 1.07986 1.19708 1.39759 0.96436 0.86783 0.87948 1.25245 0.97746 0.95767 0.99201 1.69620 1.48962 1.08866 1.27038 0.85866 0.78871 0.78976 0.80635 1.20424 1.20965 1.19404 0.92995 0.92560 0.91812 0.90699 0.88850 0.91094 0.91994 0.92516 0.77070 0.82733 0.83579 0.81348 0.82979 0.89726 0.94232 0.77542 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.41 37.16 0.35 -1.18 16 2 C 0.08 0.97 2.59 -67.71 -0.18 0.79 16 3 H 0.04 0.48 7.28 -51.93 -0.38 0.11 16 4 C -0.13 -1.23 4.34 -26.73 -0.12 -1.34 16 5 C 0.13 1.49 2.48 -67.93 -0.17 1.32 16 6 H 0.10 1.38 5.72 -51.93 -0.30 1.09 16 7 C -0.16 -1.55 9.48 37.16 0.35 -1.19 16 8 N -0.72 -7.68 4.44 -55.15 -0.25 -7.92 16 9 C 0.59 7.99 7.75 -12.90 -0.10 7.89 16 10 O -0.52 -9.18 16.50 5.19 0.09 -9.09 16 11 C -0.26 -3.01 6.45 -36.80 -0.24 -3.25 16 12 C -0.05 -0.60 10.01 -40.44 -0.40 -1.01 16 13 C -0.15 -1.28 10.15 -41.41 -0.42 -1.70 16 14 C -0.23 -1.72 10.92 29.18 0.32 -1.40 16 15 S 0.19 1.52 22.16 -107.50 -2.38 -0.86 16 16 N -0.66 -11.06 5.93 -107.99 -0.64 -11.70 16 17 C 0.05 0.98 5.97 -4.97 -0.03 0.95 16 18 C 0.44 11.01 7.82 -10.98 -0.09 10.93 16 19 O -0.58 -16.51 15.78 5.55 0.09 -16.43 16 20 N -0.56 -14.97 5.29 -10.96 -0.06 -15.02 16 21 C -0.30 -8.60 9.68 -14.93 -0.14 -8.75 16 22 H 0.10 3.11 7.16 -52.48 -0.38 2.73 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -25.26 13.05 55.50 0.72 -24.54 16 25 Si 0.93 21.71 29.55 -169.99 -5.02 16.69 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.40 3.21 7.72 -40.82 -0.31 2.90 16 38 H 0.16 1.73 8.06 -52.48 -0.42 1.30 16 39 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 41 H 0.35 6.28 6.12 -39.29 -0.24 6.04 16 42 H 0.08 1.46 7.44 -51.93 -0.39 1.08 16 43 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 44 H 0.39 9.93 7.90 -40.82 -0.32 9.61 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -34.80 390.89 -9.00 -43.81 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -6.48 Total: 16.62 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.96 Total: 2.56 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.22 Total: -59.19 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: 0.17 Total: -25.52 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.38 Total: -0.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.80 -9.00 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133580299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.107 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds