Wall clock time and date at job start Sat Apr 11 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46714 * 2 1 4 4 C 1.52996 * 109.47143 * 240.00479 * 2 1 3 5 5 C 1.52997 * 109.47325 * 174.54605 * 4 2 1 6 6 H 1.09000 * 109.47173 * 54.62165 * 5 4 2 7 7 C 1.53006 * 109.46847 * 294.62370 * 5 4 2 8 8 N 1.46903 * 109.47618 * 174.62429 * 5 4 2 9 9 C 1.46896 * 111.00070 * 203.25774 * 8 5 4 10 10 C 1.50702 * 109.47116 * 179.97438 * 9 8 5 11 11 O 1.21297 * 119.99509 * 0.02562 * 10 9 8 12 12 N 1.34768 * 120.00093 * 180.02562 * 10 9 8 13 13 C 1.37099 * 119.99886 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00565 * 359.97438 * 13 12 10 15 15 C 1.38951 * 120.00097 * 179.97438 * 13 12 10 16 16 N 1.31414 * 119.99756 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00180 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48511 * 109.46897 * 120.00229 * 17 15 13 20 20 H 1.48500 * 109.47336 * 239.99979 * 17 15 13 21 21 N 1.46500 * 109.47206 * 119.99792 * 2 1 3 22 22 C 1.34774 * 120.00255 * 273.55936 * 21 2 1 23 23 O 1.21702 * 120.00250 * 0.02562 * 22 21 2 24 24 C 1.46585 * 119.99801 * 180.02562 * 22 21 2 25 25 C 1.36652 * 125.45594 * 179.97438 * 24 22 21 26 26 C 1.37470 * 113.29695 * 180.02562 * 25 24 22 27 27 C 1.33822 * 115.09883 * 0.02562 * 26 25 24 28 28 S 1.70613 * 110.95498 * 359.72198 * 27 26 25 29 29 H 1.09002 * 109.46714 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47308 * 299.99676 * 1 2 3 31 31 H 1.08997 * 109.47784 * 59.99901 * 1 2 3 32 32 H 1.09001 * 109.47203 * 294.54347 * 4 2 1 33 33 H 1.08994 * 109.47236 * 54.54525 * 4 2 1 34 34 H 1.09008 * 109.47197 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47067 * 299.99860 * 7 5 4 36 36 H 1.08997 * 109.47296 * 59.99914 * 7 5 4 37 37 H 1.00898 * 110.99645 * 327.21229 * 8 5 4 38 38 H 1.08994 * 109.47151 * 299.99961 * 9 8 5 39 39 H 1.08998 * 109.47003 * 59.99858 * 9 8 5 40 40 H 0.97002 * 120.00159 * 359.97438 * 12 10 9 41 41 H 0.97004 * 119.99924 * 180.02562 * 16 15 13 42 42 H 0.97004 * 119.99403 * 93.56397 * 21 2 1 43 43 H 1.08006 * 123.34862 * 359.97438 * 25 24 22 44 44 H 1.08002 * 122.45115 * 180.02562 * 26 25 24 45 45 H 1.07996 * 124.51666 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5638 -0.6035 -1.3197 6 1 3.9999 -0.9711 -0.3909 7 6 3.9533 0.8624 -1.5211 8 7 4.0651 -1.4025 -2.4459 9 6 5.4720 -1.7733 -2.2433 10 6 5.9500 -2.5907 -3.4156 11 8 5.1931 -2.8394 -4.3303 12 7 7.2183 -3.0452 -3.4478 13 6 7.6532 -3.7884 -4.5146 14 1 6.9794 -4.0100 -5.3291 15 6 8.9610 -4.2567 -4.5481 16 7 9.7808 -3.9876 -3.5569 17 14 9.5535 -5.2699 -6.0013 18 1 8.4453 -5.4315 -6.9766 19 1 10.6919 -4.5770 -6.6565 20 1 9.9943 -6.6060 -5.5264 21 7 2.0183 -0.6906 1.1962 22 6 2.1747 -0.0115 2.3498 23 8 1.9097 1.1754 2.3980 24 6 2.6638 -0.7024 3.5464 25 6 2.8635 -0.1254 4.7690 26 6 3.3294 -1.0060 5.7162 27 6 3.5063 -2.2609 5.2864 28 16 3.0822 -2.4076 3.6404 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7586 -1.7731 -1.2019 33 1 1.5991 -0.2668 -2.1365 34 1 5.0390 0.9462 -1.5717 35 1 3.5172 1.2299 -2.4499 36 1 3.5814 1.4552 -0.6855 37 1 3.4930 -2.2206 -2.5918 38 1 6.0770 -0.8706 -2.1584 39 1 5.5651 -2.3602 -1.3295 40 1 7.8237 -2.8460 -2.7165 41 1 10.6939 -4.3142 -3.5804 42 1 2.2292 -1.6366 1.1578 43 1 2.6748 0.9188 4.9706 44 1 3.5373 -0.7069 6.7330 45 1 3.8648 -3.0734 5.9009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133580300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:57 Heat of formation + Delta-G solvation = -47.730411 kcal Electronic energy + Delta-G solvation = -26401.391016 eV Core-core repulsion = 22545.164356 eV Total energy + Delta-G solvation = -3856.226661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24590 -38.53572 -38.00327 -37.17181 -35.20784 -33.88334 -32.22893 -31.23351 -30.42853 -29.62698 -27.09977 -26.25591 -25.40535 -24.04804 -22.51166 -21.22198 -20.27207 -19.62714 -19.25051 -18.89217 -17.87698 -16.60262 -16.33739 -16.23186 -15.60246 -15.44995 -15.10721 -14.95762 -14.45070 -14.20137 -13.95516 -13.87425 -13.56527 -13.32659 -13.19378 -13.10419 -12.75196 -12.67174 -12.45155 -12.24279 -12.09614 -11.88923 -11.68533 -11.51218 -11.36788 -11.20035 -11.04744 -10.87284 -10.69054 -10.34617 -10.30954 -10.22349 -9.52044 -9.47197 -9.19668 -8.98187 -8.44210 -8.06147 -7.95763 -6.41875 -3.82623 0.14321 1.09043 1.49563 2.04177 2.81995 2.93208 3.16026 3.26589 3.33879 3.90750 4.01984 4.23901 4.46547 4.62046 4.68131 4.76118 4.90581 4.92773 5.09261 5.10045 5.17204 5.25447 5.28550 5.38689 5.45832 5.54667 5.64600 5.72077 5.77345 5.78811 5.85196 5.87130 5.93471 5.97439 6.03789 6.10269 6.21449 6.27462 6.41841 7.14026 7.25846 7.55290 7.68706 7.86575 8.06681 8.61296 9.17980 9.54536 10.05952 10.75961 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.002352 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.748402 B =11903.555805 C =13498.072443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.099 0.901 4 C -0.129 4.129 5 C 0.083 3.917 6 H 0.040 0.960 7 C -0.143 4.143 8 N -0.664 5.664 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.583 6.583 12 N -0.564 5.564 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.282 1.282 21 N -0.719 5.719 22 C 0.593 3.407 23 O -0.529 6.529 24 C -0.269 4.269 25 C -0.056 4.056 26 C -0.151 4.151 27 C -0.228 4.228 28 S 0.204 5.796 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.348 0.652 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.397 0.603 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 5.305 19.083 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.117 0.883 4 C -0.167 4.167 5 C -0.027 4.027 6 H 0.058 0.942 7 C -0.201 4.201 8 N -0.297 5.297 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.467 6.467 12 N -0.201 5.201 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.208 1.208 21 N -0.371 5.371 22 C 0.379 3.621 23 O -0.408 6.408 24 C -0.390 4.390 25 C -0.089 4.089 26 C -0.182 4.182 27 C -0.366 4.366 28 S 0.471 5.529 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.168 0.832 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.231 0.769 43 H 0.171 0.829 44 H 0.164 0.836 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.407 5.253 17.067 23.585 hybrid contribution 1.034 -0.494 1.708 2.057 sum -14.373 4.759 18.775 24.119 Atomic orbital electron populations 1.22178 0.94900 1.02306 1.02753 1.21124 0.94078 0.98080 0.82963 0.88344 1.22089 0.95809 1.01204 0.97634 1.21515 0.93463 0.95393 0.92313 0.94223 1.21863 1.01783 0.94797 1.01635 1.60118 1.02298 1.26564 1.40690 1.21709 0.90592 0.99337 0.96521 1.19820 0.83520 0.85029 0.88947 1.90521 1.55197 1.61919 1.39095 1.41876 1.09897 1.46998 1.21348 1.19750 0.95993 1.27369 0.99656 0.87882 1.25265 0.95862 0.98400 0.98475 1.69624 1.06717 1.46377 1.31617 0.85806 0.78752 0.79004 0.80818 1.19214 1.20740 1.20781 1.46014 1.67747 1.13140 1.10193 1.16925 0.77175 0.86209 0.81780 1.90830 1.50988 1.14543 1.84394 1.24697 1.16412 0.98550 0.99314 1.20819 0.96268 1.01495 0.90337 1.20074 1.04118 0.92383 1.01664 1.25367 1.08174 1.02308 1.00777 1.83147 1.58796 1.05137 1.05787 0.92369 0.92087 0.91163 0.91236 0.88889 0.92650 0.91754 0.92697 0.83214 0.89675 0.94050 0.77486 0.91941 0.76883 0.82884 0.83639 0.81275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.50 37.16 0.35 -0.99 16 2 C 0.14 1.32 2.47 -67.93 -0.17 1.15 16 3 H 0.10 1.06 5.73 -51.93 -0.30 0.77 16 4 C -0.13 -1.22 4.28 -26.73 -0.11 -1.34 16 5 C 0.08 1.00 2.63 -67.71 -0.18 0.82 16 6 H 0.04 0.48 7.31 -51.93 -0.38 0.10 16 7 C -0.14 -1.74 9.16 37.16 0.34 -1.40 16 8 N -0.66 -10.41 5.93 -107.99 -0.64 -11.05 16 9 C 0.05 0.90 5.97 -4.98 -0.03 0.87 16 10 C 0.44 10.41 7.82 -10.99 -0.09 10.32 16 11 O -0.58 -15.79 15.78 5.54 0.09 -15.71 16 12 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 13 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 14 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 17 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 N -0.72 -6.74 4.44 -55.15 -0.25 -6.99 16 22 C 0.59 6.75 7.76 -12.90 -0.10 6.65 16 23 O -0.53 -7.64 16.48 5.19 0.09 -7.56 16 24 C -0.27 -2.63 6.45 -36.79 -0.24 -2.86 16 25 C -0.06 -0.50 10.01 -40.43 -0.40 -0.90 16 26 C -0.15 -1.08 10.15 -41.41 -0.42 -1.50 16 27 C -0.23 -1.54 10.92 29.18 0.32 -1.22 16 28 S 0.20 1.52 22.16 -107.50 -2.38 -0.86 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.60 8.02 -51.93 -0.42 0.19 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.72 7.34 -51.92 -0.38 0.34 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.62 6.47 -51.93 -0.34 0.28 16 37 H 0.35 5.52 8.00 -39.29 -0.31 5.20 16 38 H 0.09 1.44 7.32 -51.93 -0.38 1.06 16 39 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 40 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.40 3.13 7.73 -40.82 -0.32 2.81 16 43 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 390.53 15.07 5.89 5.89 Total: -1.00 -33.23 390.53 -8.99 -42.22 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -6.45 Total: 14.65 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.97 Total: 1.60 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.22 Total: -56.24 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.26 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.38 Total: -0.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.23 -8.99 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133580300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.512 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds