Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46573 * 2 1 4 4 C 1.52994 * 109.47289 * 240.00255 * 2 1 3 5 5 C 1.52999 * 109.47212 * 174.99451 * 4 2 1 6 6 H 1.08997 * 109.47167 * 305.00498 * 5 4 2 7 7 C 1.52999 * 109.47355 * 185.00085 * 5 4 2 8 8 N 1.46502 * 109.46855 * 65.00213 * 5 4 2 9 9 C 1.34780 * 120.00129 * 205.00272 * 8 5 4 10 10 O 1.21639 * 119.99819 * 359.97438 * 9 8 5 11 11 C 1.47183 * 120.00383 * 179.97438 * 9 8 5 12 12 C 1.44421 * 123.46447 * 179.97438 * 11 9 8 13 13 C 1.32774 * 113.08547 * 180.02562 * 12 11 9 14 14 S 1.75500 * 110.57366 * 0.02562 * 13 12 11 15 15 C 1.36013 * 123.45887 * 0.02562 * 11 9 8 16 16 N 1.46902 * 109.46924 * 119.99886 * 2 1 3 17 17 C 1.46899 * 110.99959 * 275.00070 * 16 2 1 18 18 C 1.50706 * 109.46908 * 180.02562 * 17 16 2 19 19 O 1.21295 * 119.99613 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00066 * 180.02562 * 18 17 16 21 21 C 1.37096 * 120.00208 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99764 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00347 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99616 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00001 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47214 * 90.00796 * 25 23 21 27 27 H 1.48511 * 109.47255 * 209.99965 * 25 23 21 28 28 H 1.48495 * 109.47697 * 330.00397 * 25 23 21 29 29 H 1.09002 * 109.46573 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47506 * 299.99468 * 1 2 3 31 31 H 1.08999 * 109.47328 * 60.00522 * 1 2 3 32 32 H 1.09004 * 109.46907 * 54.99857 * 4 2 1 33 33 H 1.08993 * 109.47491 * 294.99677 * 4 2 1 34 34 H 1.08995 * 109.47042 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.47047 * 299.99918 * 7 5 4 36 36 H 1.08998 * 109.46926 * 60.00014 * 7 5 4 37 37 H 0.96998 * 120.00483 * 24.99674 * 8 5 4 38 38 H 1.07997 * 123.45689 * 0.27155 * 12 11 9 39 39 H 1.07996 * 124.71184 * 180.02562 * 13 12 11 40 40 H 1.08003 * 124.59171 * 359.97438 * 15 11 9 41 41 H 1.00897 * 110.99930 * 38.96123 * 16 2 1 42 42 H 1.08996 * 109.47556 * 300.00490 * 17 16 2 43 43 H 1.09001 * 109.46955 * 60.00642 * 17 16 2 44 44 H 0.97004 * 119.99907 * 359.97438 * 20 18 17 45 45 H 0.97004 * 119.99562 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 1 3.8570 0.4360 -1.2677 7 6 4.0646 -1.2247 -2.6241 8 7 4.1538 -1.3340 -0.1824 9 6 5.3748 -0.9908 0.2734 10 8 5.9881 -0.0828 -0.2548 11 6 5.9663 -1.7147 1.4102 12 6 7.2674 -1.4103 1.9582 13 6 7.5976 -2.1912 2.9800 14 16 6.3164 -3.3427 3.3154 15 6 5.3440 -2.7397 2.0521 16 7 2.0197 -0.6925 1.1995 17 6 2.0824 0.2226 2.3469 18 6 2.5885 -0.5215 3.5558 19 8 2.8696 -1.6983 3.4697 20 7 2.7286 0.1205 4.7324 21 6 3.1894 -0.5563 5.8320 22 1 3.4397 -1.6041 5.7554 23 6 3.3344 0.1057 7.0450 24 7 3.0293 1.3805 7.1383 25 14 3.9616 -0.8167 8.5434 26 1 5.4426 -0.7224 8.5986 27 1 3.3814 -0.2176 9.7722 28 1 3.5595 -2.2431 8.4507 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6054 -0.2616 -2.1369 33 1 1.7518 -1.7714 -1.2057 34 1 5.1509 -1.1481 -2.6698 35 1 3.7725 -2.2738 -2.6700 36 1 3.6264 -0.6883 -3.4657 37 1 3.6649 -2.0583 0.2386 38 1 7.9045 -0.6253 1.5785 39 1 8.5257 -2.1267 3.5284 40 1 4.3663 -3.1203 1.7959 41 1 1.4496 -1.4979 1.4100 42 1 2.7587 1.0462 2.1183 43 1 1.0870 0.6162 2.5525 44 1 2.5041 1.0617 4.8011 45 1 3.1308 1.8428 7.9851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133632994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -45.619245 kcal Electronic energy + Delta-G solvation = -28421.095795 eV Core-core repulsion = 24564.960682 eV Total energy + Delta-G solvation = -3856.135114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.64067 -38.40172 -37.32330 -36.20897 -34.76130 -33.84841 -31.78882 -31.19521 -30.31368 -28.83676 -26.88835 -26.17862 -24.57729 -23.91534 -21.98962 -20.82845 -20.39047 -19.22055 -18.72036 -17.86891 -17.59850 -16.61354 -15.98742 -15.91225 -15.15723 -14.82560 -14.64645 -14.37645 -14.21326 -13.99326 -13.71967 -13.48513 -13.06876 -13.03891 -12.71342 -12.48213 -12.46189 -12.24888 -12.14075 -12.06635 -11.99555 -11.77589 -11.55251 -11.39705 -11.24854 -11.03708 -10.80728 -10.68845 -10.66072 -10.40038 -10.20468 -9.48336 -9.38993 -8.74728 -8.54007 -8.38538 -8.00358 -7.93525 -7.88821 -6.39935 -3.80049 1.32857 2.03410 2.40775 2.47963 3.17741 3.26474 3.31042 3.62957 3.92682 3.95278 4.10661 4.34510 4.60112 4.96111 5.14829 5.19045 5.21951 5.27639 5.30644 5.37452 5.47548 5.52087 5.54901 5.66946 5.71484 5.75581 5.81376 5.84121 5.88120 5.93174 6.05925 6.09395 6.17408 6.22626 6.28569 6.31531 6.52224 6.70187 6.96682 7.21352 7.56408 7.64407 8.06924 8.08103 8.62384 8.76728 9.19359 9.56712 10.06737 10.77989 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.004753 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.561950 B = 5889.634561 C = 7942.560528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.081 3.919 3 H 0.077 0.923 4 C -0.115 4.115 5 C 0.153 3.847 6 H 0.081 0.919 7 C -0.164 4.164 8 N -0.690 5.690 9 C 0.587 3.413 10 O -0.563 6.563 11 C -0.171 4.171 12 C -0.085 4.085 13 C -0.251 4.251 14 S 0.185 5.815 15 C -0.158 4.158 16 N -0.657 5.657 17 C 0.052 3.948 18 C 0.445 3.555 19 O -0.581 6.581 20 N -0.564 5.564 21 C -0.293 4.293 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.926 3.074 26 H -0.278 1.278 27 H -0.285 1.285 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.406 0.594 38 H 0.144 0.856 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.345 0.655 42 H 0.081 0.919 43 H 0.040 0.960 44 H 0.391 0.609 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -5.532 -14.479 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.029 4.029 3 H 0.095 0.905 4 C -0.153 4.153 5 C 0.048 3.952 6 H 0.099 0.901 7 C -0.222 4.222 8 N -0.341 5.341 9 C 0.374 3.626 10 O -0.444 6.444 11 C -0.188 4.188 12 C -0.114 4.114 13 C -0.386 4.386 14 S 0.450 5.550 15 C -0.296 4.296 16 N -0.289 5.289 17 C -0.081 4.081 18 C 0.230 3.770 19 O -0.465 6.465 20 N -0.200 5.200 21 C -0.423 4.423 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.753 3.247 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.243 0.757 38 H 0.162 0.838 39 H 0.179 0.821 40 H 0.188 0.812 41 H 0.164 0.836 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.223 0.777 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.377 -6.633 -13.827 15.341 hybrid contribution -1.062 1.405 0.428 1.813 sum -0.686 -5.227 -13.400 14.399 Atomic orbital electron populations 1.22511 0.97448 1.02074 1.02072 1.21624 0.92135 0.98314 0.90869 0.90492 1.21918 0.94613 1.01460 0.97328 1.20718 0.91845 0.97331 0.85355 0.90066 1.22208 1.02123 1.00823 0.97053 1.45652 1.17407 1.37684 1.33348 1.17516 0.81031 0.82333 0.81767 1.90711 1.62392 1.31335 1.59977 1.20121 0.96588 1.00497 1.01589 1.21006 0.95020 0.99717 0.95702 1.25380 1.04495 1.04264 1.04435 1.82974 1.07151 1.33714 1.31117 1.25570 1.03875 1.00677 0.99510 1.60241 1.56927 1.09152 1.02579 1.21668 0.99595 0.95814 0.91032 1.19714 0.85037 0.88248 0.83981 1.90447 1.55445 1.16017 1.84608 1.41856 1.57662 1.12418 1.08037 1.19638 1.39694 0.96325 0.86623 0.87921 1.25232 0.97758 0.95723 0.99221 1.69615 1.48750 1.08893 1.27111 0.85927 0.78917 0.79498 0.80381 1.20392 1.21043 1.19412 0.92446 0.92588 0.92324 0.90470 0.91304 0.92154 0.92750 0.92148 0.75702 0.83808 0.82114 0.81215 0.83566 0.90103 0.94192 0.77658 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.16 37.16 0.34 -1.38 16 2 C 0.08 0.88 2.59 -67.71 -0.18 0.70 16 3 H 0.08 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.11 -1.07 4.54 -26.73 -0.12 -1.19 16 5 C 0.15 1.82 2.57 -67.93 -0.17 1.64 16 6 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 7 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 8 N -0.69 -9.67 3.77 -54.96 -0.21 -9.88 16 9 C 0.59 10.29 7.76 -12.63 -0.10 10.19 16 10 O -0.56 -11.39 16.46 5.24 0.09 -11.30 16 11 C -0.17 -2.97 5.98 -104.63 -0.63 -3.60 16 12 C -0.08 -1.42 10.10 -39.02 -0.39 -1.82 16 13 C -0.25 -3.82 11.12 28.86 0.32 -3.50 16 14 S 0.19 2.86 23.02 -107.50 -2.47 0.38 16 15 C -0.16 -2.58 9.49 29.93 0.28 -2.30 16 16 N -0.66 -8.94 3.48 -107.99 -0.38 -9.31 16 17 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 18 C 0.44 9.65 7.82 -10.98 -0.09 9.56 16 19 O -0.58 -13.36 14.71 5.54 0.08 -13.28 16 20 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 21 C -0.29 -7.88 9.68 -14.93 -0.14 -8.02 16 22 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 25 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.41 5.45 6.09 -40.82 -0.25 5.21 16 38 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.17 2.66 6.84 -52.48 -0.36 2.30 16 41 H 0.35 4.75 8.17 -39.29 -0.32 4.43 16 42 H 0.08 1.39 8.05 -51.93 -0.42 0.98 16 43 H 0.04 0.62 7.44 -51.93 -0.39 0.23 16 44 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -30.44 388.29 -8.60 -39.04 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -6.56 Total: 20.06 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.65 Total: 0.24 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.08 Total: -56.82 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.17 Total: -24.58 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.47 Total: 0.38 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.44 -8.60 -39.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133632994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.583 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds