Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.52997 * 109.46982 * 184.99911 * 4 2 1 6 6 H 1.09002 * 109.47251 * 304.99612 * 5 4 2 7 7 C 1.53001 * 109.46823 * 184.99573 * 5 4 2 8 8 N 1.46499 * 109.47207 * 65.00063 * 5 4 2 9 9 C 1.34774 * 119.99826 * 204.99982 * 8 5 4 10 10 O 1.21633 * 120.00389 * 359.97438 * 9 8 5 11 11 C 1.47191 * 119.99892 * 179.97438 * 9 8 5 12 12 C 1.44428 * 123.45994 * 179.97438 * 11 9 8 13 13 C 1.32778 * 113.08236 * 179.97438 * 12 11 9 14 14 S 1.75507 * 110.57371 * 359.97438 * 13 12 11 15 15 C 1.36012 * 123.46231 * 359.69908 * 11 9 8 16 16 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 17 17 C 1.46899 * 111.00029 * 85.00270 * 16 2 1 18 18 C 1.50703 * 109.47107 * 179.97438 * 17 16 2 19 19 O 1.21286 * 120.00016 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00161 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00108 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00333 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99712 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99793 * 179.97438 * 23 21 20 25 25 Si 1.86790 * 120.00276 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47428 * 90.00011 * 25 23 21 27 27 H 1.48508 * 109.47300 * 209.99991 * 25 23 21 28 28 H 1.48504 * 109.47120 * 329.99721 * 25 23 21 29 29 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 30 30 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 31 31 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 33 33 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 34 34 H 1.09005 * 109.46941 * 60.00437 * 7 5 4 35 35 H 1.09000 * 109.47024 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47238 * 300.00046 * 7 5 4 37 37 H 0.97002 * 119.99935 * 24.99423 * 8 5 4 38 38 H 1.07999 * 123.45899 * 359.95252 * 12 11 9 39 39 H 1.07994 * 124.71008 * 180.02562 * 13 12 11 40 40 H 1.08002 * 124.59039 * 0.02562 * 15 11 9 41 41 H 1.00902 * 111.00190 * 321.03970 * 16 2 1 42 42 H 1.09002 * 109.47043 * 299.99792 * 17 16 2 43 43 H 1.09001 * 109.47354 * 59.99854 * 17 16 2 44 44 H 0.97005 * 119.99463 * 359.97438 * 20 18 17 45 45 H 0.96996 * 120.00229 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9924 0.3867 7 6 4.0851 -1.4385 2.4923 8 7 3.9479 0.7892 1.4925 9 6 5.1611 1.2134 1.0867 10 8 5.9381 0.4316 0.5724 11 6 5.5459 2.6227 1.2659 12 6 6.8248 3.1569 0.8598 13 6 6.9535 4.4529 1.1182 14 16 5.4991 5.0780 1.8761 15 6 4.7315 3.5571 1.8261 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5884 -0.5214 -3.5558 19 8 2.8695 -1.6981 -3.4699 20 7 2.7296 0.1210 -4.7322 21 6 3.1894 -0.5560 -5.8320 22 1 3.4389 -1.6039 -5.7558 23 6 3.3344 0.1062 -7.0450 24 7 3.7756 -0.5426 -8.0992 25 14 2.9022 1.9186 -7.1772 26 1 4.1024 2.7375 -6.8702 27 1 2.4383 2.2177 -8.5559 28 1 1.8220 2.2417 -6.2106 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7717 1.2054 34 1 3.8000 -2.4822 2.3592 35 1 5.1714 -1.3620 2.5380 36 1 3.6545 -1.0596 3.4193 37 1 3.3284 1.4127 1.9029 38 1 7.5974 2.5630 0.3941 39 1 7.8308 5.0408 0.8926 40 1 3.7341 3.3613 2.1912 41 1 1.4495 -1.4979 -1.4101 42 1 1.0870 0.6165 -2.5525 43 1 2.7588 1.0463 -2.1182 44 1 2.5051 1.0622 -4.8008 45 1 3.8772 -0.0803 -8.9458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133632995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -41.731087 kcal Electronic energy + Delta-G solvation = -27152.506254 eV Core-core repulsion = 23296.539744 eV Total energy + Delta-G solvation = -3855.966510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.08778 -38.61731 -37.59600 -36.75586 -35.11664 -33.88723 -32.01836 -31.59773 -30.62556 -29.46199 -26.94059 -26.35152 -25.23902 -23.70987 -22.36805 -21.11908 -20.49812 -19.47473 -19.28501 -18.37904 -18.20583 -17.22075 -16.23665 -15.77740 -15.54225 -15.01337 -14.82643 -14.74782 -14.70722 -14.06383 -13.70721 -13.57463 -13.48156 -13.28622 -13.09277 -12.92807 -12.79402 -12.65857 -12.46608 -12.32505 -12.24437 -12.15133 -11.88247 -11.59182 -11.39903 -11.16716 -11.12308 -10.89859 -10.76581 -10.56297 -9.93082 -9.87017 -9.52288 -9.34347 -9.07916 -8.68295 -8.53586 -8.13767 -8.06150 -6.26406 -3.77301 0.50724 1.25631 1.62469 1.84950 3.04846 3.10225 3.12791 3.17437 3.34929 3.79991 4.12318 4.15704 4.43466 4.54511 4.79740 4.84101 4.95314 4.99194 5.07603 5.13432 5.25364 5.28057 5.30590 5.42307 5.50122 5.56272 5.58449 5.65573 5.69341 5.76688 5.83415 5.83618 5.94459 6.01384 6.01999 6.05570 6.16959 6.34507 6.53990 7.15975 7.47498 7.62575 7.64372 8.19987 8.24956 8.64985 9.00226 9.47657 9.88530 10.86958 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008557 B = 0.003383 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.557618 B = 8275.146234 C =10156.358236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.081 3.919 3 H 0.075 0.925 4 C -0.112 4.112 5 C 0.144 3.856 6 H 0.113 0.887 7 C -0.162 4.162 8 N -0.718 5.718 9 C 0.574 3.426 10 O -0.523 6.523 11 C -0.146 4.146 12 C -0.084 4.084 13 C -0.235 4.235 14 S 0.175 5.825 15 C -0.216 4.216 16 N -0.659 5.659 17 C 0.051 3.949 18 C 0.451 3.549 19 O -0.562 6.562 20 N -0.592 5.592 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.271 1.271 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.391 0.609 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.351 0.649 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.369 0.631 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 12.939 25.602 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.030 4.030 3 H 0.093 0.907 4 C -0.151 4.151 5 C 0.040 3.960 6 H 0.130 0.870 7 C -0.221 4.221 8 N -0.369 5.369 9 C 0.359 3.641 10 O -0.400 6.400 11 C -0.165 4.165 12 C -0.113 4.113 13 C -0.369 4.369 14 S 0.440 5.560 15 C -0.355 4.355 16 N -0.291 5.291 17 C -0.082 4.082 18 C 0.237 3.763 19 O -0.444 6.444 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.225 0.775 38 H 0.173 0.827 39 H 0.187 0.813 40 H 0.185 0.815 41 H 0.171 0.829 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.202 0.798 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.043 13.040 25.717 28.907 hybrid contribution -1.264 0.548 -0.882 1.636 sum -3.307 13.588 24.835 28.502 Atomic orbital electron populations 1.22544 0.97444 1.02372 1.01978 1.21607 0.92112 0.98118 0.91136 0.90672 1.21870 0.94314 1.02215 0.96657 1.21037 0.94514 0.79902 1.00527 0.86959 1.22182 1.01903 1.00209 0.97762 1.45910 1.16378 1.11700 1.62960 1.17560 0.81995 0.86415 0.78155 1.90848 1.50866 1.55757 1.42509 1.20448 0.95546 0.94724 1.05778 1.21224 0.96474 0.94194 0.99447 1.25520 1.03182 0.99091 1.09138 1.83024 1.06872 1.08683 1.57428 1.25617 1.04698 0.98769 1.06373 1.60139 1.57646 1.08966 1.02368 1.21695 0.99600 0.95851 0.91084 1.19712 0.84605 0.88253 0.83720 1.90564 1.53619 1.16024 1.84196 1.42200 1.60275 1.11060 1.09615 1.19437 1.39963 0.98018 0.85760 0.86279 1.25024 0.97570 0.98304 0.95261 1.69622 1.45341 1.36474 1.00834 0.86683 0.78998 0.85360 0.78404 1.19595 1.20209 1.19621 0.92328 0.92596 0.92174 0.91632 0.89975 0.91515 0.92226 0.93114 0.77490 0.82678 0.81290 0.81478 0.82916 0.93969 0.89867 0.79806 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.16 37.16 0.34 -1.33 16 2 C 0.08 0.86 2.53 -67.71 -0.17 0.69 16 3 H 0.08 0.79 7.28 -51.93 -0.38 0.41 16 4 C -0.11 -1.02 4.43 -26.73 -0.12 -1.14 16 5 C 0.14 1.66 2.52 -67.93 -0.17 1.48 16 6 H 0.11 1.82 7.05 -51.93 -0.37 1.45 16 7 C -0.16 -1.68 9.48 37.16 0.35 -1.32 16 8 N -0.72 -7.54 4.42 -54.96 -0.24 -7.78 16 9 C 0.57 7.86 7.76 -12.63 -0.10 7.76 16 10 O -0.52 -9.61 16.46 5.25 0.09 -9.53 16 11 C -0.15 -1.65 5.98 -104.63 -0.63 -2.27 16 12 C -0.08 -0.93 10.10 -39.02 -0.39 -1.32 16 13 C -0.23 -1.97 11.12 28.86 0.32 -1.65 16 14 S 0.17 1.22 23.02 -107.50 -2.48 -1.26 16 15 C -0.22 -1.74 10.38 29.93 0.31 -1.43 16 16 N -0.66 -9.97 5.24 -107.99 -0.57 -10.54 16 17 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 18 C 0.45 10.61 7.82 -10.98 -0.09 10.52 16 19 O -0.56 -15.54 15.78 5.55 0.09 -15.45 16 20 N -0.59 -14.62 5.09 -10.97 -0.06 -14.68 16 21 C -0.30 -8.84 10.16 -14.94 -0.15 -8.99 16 22 H 0.12 3.96 7.39 -52.49 -0.39 3.57 16 23 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -26.37 13.96 55.50 0.77 -25.59 16 25 Si 0.88 19.91 27.73 -169.99 -4.71 15.19 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.55 7.45 -51.92 -0.39 0.16 16 31 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.39 2.84 7.10 -40.82 -0.29 2.55 16 38 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.17 0.87 7.01 -52.49 -0.37 0.50 16 41 H 0.35 5.52 8.17 -39.29 -0.32 5.20 16 42 H 0.04 0.63 7.44 -51.93 -0.39 0.24 16 43 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 44 H 0.37 8.06 5.76 -40.82 -0.24 7.82 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -36.19 389.47 -8.36 -44.56 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -6.51 Total: 16.31 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.62 Total: 2.89 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.09 Total: -58.58 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.17 Total: -24.98 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.71 Total: 15.19 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.48 Total: -1.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.19 -8.36 -44.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133632995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.825 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds