Wall clock time and date at job start Sat Apr 11 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47402 * 2 1 4 4 C 1.53002 * 109.47193 * 239.99675 * 2 1 3 5 5 C 1.53000 * 109.47422 * 175.00113 * 4 2 1 6 6 H 1.09007 * 109.47034 * 305.00181 * 5 4 2 7 7 C 1.52998 * 109.47397 * 185.00462 * 5 4 2 8 8 N 1.46897 * 109.47121 * 65.00025 * 5 4 2 9 9 C 1.46897 * 111.00347 * 205.00238 * 8 5 4 10 10 C 1.50694 * 109.47350 * 179.97438 * 9 8 5 11 11 O 1.21290 * 120.00282 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00302 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00175 * 179.97438 * 12 10 9 14 14 H 1.07994 * 119.99943 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99743 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00046 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00248 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47434 * 89.99664 * 17 15 13 19 19 H 1.48504 * 109.47061 * 209.99651 * 17 15 13 20 20 H 1.48499 * 109.46972 * 329.99600 * 17 15 13 21 21 N 1.46503 * 109.47195 * 120.00032 * 2 1 3 22 22 C 1.34769 * 119.99689 * 275.00013 * 21 2 1 23 23 O 1.21635 * 120.00291 * 0.02562 * 22 21 2 24 24 C 1.47190 * 119.99768 * 179.97438 * 22 21 2 25 25 C 1.44435 * 123.46336 * 179.97438 * 24 22 21 26 26 C 1.32763 * 113.08351 * 179.97438 * 25 24 22 27 27 S 1.75505 * 110.57820 * 359.78373 * 26 25 24 28 28 C 1.36014 * 123.46278 * 359.97438 * 24 22 21 29 29 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47229 * 300.00034 * 1 2 3 31 31 H 1.09001 * 109.47153 * 60.00045 * 1 2 3 32 32 H 1.08998 * 109.47690 * 295.00599 * 4 2 1 33 33 H 1.09002 * 109.46945 * 55.00170 * 4 2 1 34 34 H 1.09007 * 109.46799 * 299.99862 * 7 5 4 35 35 H 1.09000 * 109.47091 * 59.99695 * 7 5 4 36 36 H 1.08997 * 109.47318 * 179.97438 * 7 5 4 37 37 H 1.00894 * 110.99834 * 81.04940 * 8 5 4 38 38 H 1.08997 * 109.47263 * 300.00400 * 9 8 5 39 39 H 1.09010 * 109.47123 * 60.00014 * 9 8 5 40 40 H 0.96998 * 119.99691 * 0.02562 * 12 10 9 41 41 H 0.96996 * 120.00336 * 180.02562 * 16 15 13 42 42 H 0.97004 * 119.99684 * 94.99645 * 21 2 1 43 43 H 1.07999 * 123.45548 * 359.96508 * 25 24 22 44 44 H 1.08000 * 124.71190 * 180.02562 * 26 25 24 45 45 H 1.08002 * 124.58647 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 1 3.8571 0.4357 -1.2678 7 6 4.0645 -1.2251 -2.6240 8 7 4.1553 -1.3362 -0.1793 9 6 5.4833 -0.8026 0.1513 10 6 6.0558 -1.5667 1.3172 11 8 5.4202 -2.4676 1.8227 12 7 7.2745 -1.2497 1.7976 13 6 7.7951 -1.9445 2.8586 14 1 7.2288 -2.7461 3.3092 15 6 9.0513 -1.6173 3.3542 16 7 9.5506 -2.2836 4.3709 17 14 10.0305 -0.2303 2.5752 18 1 9.7031 1.0490 3.2543 19 1 11.4823 -0.5088 2.7173 20 1 9.6847 -0.1287 1.1346 21 7 2.0183 -0.6906 1.1962 22 6 2.1470 -0.0183 2.3571 23 8 1.8573 1.1618 2.4118 24 6 2.6371 -0.7122 3.5590 25 6 2.8041 -0.0655 4.8396 26 6 3.2579 -0.8843 5.7810 27 16 3.4959 -2.4978 5.1329 28 6 2.9794 -2.0285 3.5779 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.7722 -2.2743 -2.6699 35 1 3.6263 -0.6887 -3.4657 36 1 5.1507 -1.1478 -2.6702 37 1 4.1998 -2.3269 -0.3655 38 1 6.1419 -0.9073 -0.7109 39 1 5.3959 0.2513 0.4157 40 1 7.7830 -0.5295 1.3931 41 1 10.4273 -2.0550 4.7171 42 1 2.2490 -1.6318 1.1526 43 1 2.5826 0.9771 5.0135 44 1 3.4500 -0.5982 6.8046 45 1 2.9263 -2.6881 2.7243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133632996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:10 Heat of formation + Delta-G solvation = -38.537624 kcal Electronic energy + Delta-G solvation = -28461.089638 eV Core-core repulsion = 24605.261607 eV Total energy + Delta-G solvation = -3855.828031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.67027 -38.56364 -37.41201 -36.21423 -34.81384 -33.90973 -31.86679 -31.60640 -30.41014 -28.83017 -26.95090 -26.35159 -24.56951 -23.73902 -21.99690 -20.89796 -20.39982 -19.36311 -18.71992 -18.33099 -17.58083 -16.61618 -16.00873 -15.93693 -15.29364 -14.95480 -14.73071 -14.43116 -14.36533 -14.02342 -13.57967 -13.41224 -13.07378 -13.00502 -12.76052 -12.55956 -12.47894 -12.33660 -12.28089 -12.17394 -12.07593 -11.95011 -11.78598 -11.55032 -11.30996 -11.15148 -10.86999 -10.73054 -10.61239 -10.59553 -9.97201 -9.55273 -9.39738 -8.79236 -8.55767 -8.47680 -8.16662 -8.06207 -7.87872 -6.30570 -3.80857 1.35229 2.07536 2.44464 2.49753 3.02195 3.07800 3.15649 3.60884 3.75405 3.93637 4.09231 4.12777 4.54370 4.82651 4.96623 5.12004 5.19483 5.23571 5.26537 5.33689 5.42631 5.49440 5.51045 5.59615 5.67669 5.69797 5.74848 5.78983 5.81117 5.90202 5.90619 5.97843 6.03453 6.14433 6.24090 6.27581 6.54276 6.72193 6.93940 7.08814 7.54791 7.58816 8.05128 8.15119 8.60066 8.74765 8.95660 9.43854 9.82806 10.82460 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.005017 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.677857 B = 5579.154103 C = 7657.572977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.153 3.847 3 H 0.081 0.919 4 C -0.115 4.115 5 C 0.081 3.919 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.657 5.657 9 C 0.049 3.951 10 C 0.454 3.546 11 O -0.562 6.562 12 N -0.591 5.591 13 C -0.299 4.299 14 H 0.121 0.879 15 C 0.042 3.958 16 N -0.881 5.881 17 Si 0.875 3.125 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.271 1.271 21 N -0.691 5.691 22 C 0.587 3.413 23 O -0.564 6.564 24 C -0.173 4.173 25 C -0.087 4.087 26 C -0.250 4.250 27 S 0.197 5.803 28 C -0.161 4.161 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.347 0.653 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.369 0.631 41 H 0.272 0.728 42 H 0.406 0.594 43 H 0.143 0.857 44 H 0.161 0.839 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 2.201 -9.284 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.099 0.901 4 C -0.153 4.153 5 C -0.029 4.029 6 H 0.095 0.905 7 C -0.241 4.241 8 N -0.289 5.289 9 C -0.084 4.084 10 C 0.239 3.761 11 O -0.444 6.444 12 N -0.230 5.230 13 C -0.428 4.428 14 H 0.138 0.862 15 C -0.160 4.160 16 N -0.521 5.521 17 Si 0.702 3.298 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.197 1.197 21 N -0.342 5.342 22 C 0.374 3.626 23 O -0.445 6.445 24 C -0.191 4.191 25 C -0.117 4.117 26 C -0.385 4.385 27 S 0.462 5.538 28 C -0.300 4.300 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.166 0.834 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.201 0.799 41 H 0.083 0.917 42 H 0.243 0.757 43 H 0.161 0.839 44 H 0.179 0.821 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.523 1.385 -7.650 16.472 hybrid contribution 1.489 1.745 -2.056 3.080 sum -13.034 3.130 -9.706 16.550 Atomic orbital electron populations 1.22208 0.96059 1.01789 1.02167 1.20715 0.92806 0.97349 0.84377 0.90097 1.21920 0.94793 1.01378 0.97237 1.21628 0.94283 0.98668 0.88328 0.90486 1.22514 1.01503 1.01433 0.98688 1.60233 1.22032 1.08143 1.38511 1.21705 0.90046 0.99824 0.96847 1.19619 0.82592 0.87101 0.86751 1.90489 1.59801 1.32661 1.61462 1.42216 1.16290 1.33100 1.31414 1.19383 1.00986 1.15681 1.06712 0.86162 1.25000 0.96828 0.97757 0.96443 1.69609 1.18251 1.40222 1.24064 0.86740 0.80742 0.82958 0.79342 1.19658 1.20270 1.19696 1.45659 1.65945 1.14448 1.08145 1.17530 0.76531 0.85857 0.82689 1.90707 1.52253 1.15870 1.85656 1.20103 1.10545 0.93281 0.95121 1.20982 0.99752 1.00418 0.90536 1.25404 1.10975 0.98118 1.04033 1.83091 1.61299 1.09801 0.99567 1.25587 1.01522 0.99495 1.03416 0.92715 0.92128 0.92169 0.91234 0.90433 0.92343 0.92261 0.92658 0.83375 0.94053 0.89942 0.79893 0.91713 0.75690 0.83894 0.82102 0.81295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.31 16 2 C 0.15 1.75 2.57 -67.93 -0.17 1.57 16 3 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.11 -1.01 4.54 -26.73 -0.12 -1.13 16 5 C 0.08 0.82 2.59 -67.72 -0.18 0.65 16 6 H 0.08 0.85 7.80 -51.93 -0.40 0.44 16 7 C -0.18 -1.59 9.16 37.16 0.34 -1.25 16 8 N -0.66 -8.45 3.48 -108.00 -0.38 -8.83 16 9 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 10 C 0.45 9.43 7.82 -10.99 -0.09 9.35 16 11 O -0.56 -12.76 14.72 5.55 0.08 -12.68 16 12 N -0.59 -13.57 5.09 -10.97 -0.06 -13.62 16 13 C -0.30 -8.13 10.16 -14.93 -0.15 -8.28 16 14 H 0.12 3.70 7.39 -52.49 -0.39 3.31 16 15 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 16 N -0.88 -25.31 13.96 55.50 0.77 -24.54 16 17 Si 0.88 19.46 27.74 -169.99 -4.71 14.75 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 21 N -0.69 -9.42 3.77 -54.96 -0.21 -9.63 16 22 C 0.59 10.11 7.76 -12.63 -0.10 10.01 16 23 O -0.56 -11.20 16.46 5.25 0.09 -11.11 16 24 C -0.17 -3.00 5.98 -104.62 -0.63 -3.63 16 25 C -0.09 -1.47 10.10 -39.02 -0.39 -1.86 16 26 C -0.25 -3.90 11.12 28.86 0.32 -3.58 16 27 S 0.20 3.14 23.02 -107.50 -2.48 0.67 16 28 C -0.16 -2.66 9.50 29.93 0.28 -2.38 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 37 H 0.35 4.53 8.17 -39.30 -0.32 4.21 16 38 H 0.04 0.58 7.44 -51.93 -0.39 0.19 16 39 H 0.08 1.29 8.06 -51.92 -0.42 0.87 16 40 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.41 5.31 6.09 -40.82 -0.25 5.06 16 43 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 44 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 45 H 0.17 2.65 6.85 -52.49 -0.36 2.29 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -31.51 385.20 -8.25 -39.76 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -6.51 Total: 19.50 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.65 Total: -0.07 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.14 Total: -56.62 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.17 Total: -23.79 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.75 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.48 Total: 0.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.51 -8.25 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133632996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.225 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds