Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47402 * 2 1 4 4 C 1.53002 * 109.47193 * 239.99675 * 2 1 3 5 5 C 1.53000 * 109.47422 * 175.00113 * 4 2 1 6 6 H 1.09007 * 109.47034 * 305.00181 * 5 4 2 7 7 C 1.52998 * 109.47397 * 185.00462 * 5 4 2 8 8 N 1.46897 * 109.47121 * 65.00025 * 5 4 2 9 9 C 1.46897 * 111.00347 * 205.00238 * 8 5 4 10 10 C 1.50694 * 109.47350 * 179.97438 * 9 8 5 11 11 O 1.21290 * 120.00282 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00302 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00175 * 179.97438 * 12 10 9 14 14 H 1.07994 * 119.99943 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99743 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00046 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00248 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47434 * 89.99664 * 17 15 13 19 19 H 1.48504 * 109.47061 * 209.99651 * 17 15 13 20 20 H 1.48499 * 109.46972 * 329.99600 * 17 15 13 21 21 N 1.46503 * 109.47195 * 120.00032 * 2 1 3 22 22 C 1.34769 * 119.99689 * 275.00013 * 21 2 1 23 23 O 1.21635 * 120.00291 * 0.02562 * 22 21 2 24 24 C 1.47190 * 119.99768 * 179.97438 * 22 21 2 25 25 C 1.44435 * 123.46336 * 179.97438 * 24 22 21 26 26 C 1.32763 * 113.08351 * 179.97438 * 25 24 22 27 27 S 1.75505 * 110.57820 * 359.78373 * 26 25 24 28 28 C 1.36014 * 123.46278 * 359.97438 * 24 22 21 29 29 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47229 * 300.00034 * 1 2 3 31 31 H 1.09001 * 109.47153 * 60.00045 * 1 2 3 32 32 H 1.08998 * 109.47690 * 295.00599 * 4 2 1 33 33 H 1.09002 * 109.46945 * 55.00170 * 4 2 1 34 34 H 1.09007 * 109.46799 * 299.99862 * 7 5 4 35 35 H 1.09000 * 109.47091 * 59.99695 * 7 5 4 36 36 H 1.08997 * 109.47318 * 179.97438 * 7 5 4 37 37 H 1.00894 * 110.99834 * 81.04940 * 8 5 4 38 38 H 1.08997 * 109.47263 * 300.00400 * 9 8 5 39 39 H 1.09010 * 109.47123 * 60.00014 * 9 8 5 40 40 H 0.96998 * 119.99691 * 0.02562 * 12 10 9 41 41 H 0.96996 * 120.00336 * 180.02562 * 16 15 13 42 42 H 0.97004 * 119.99684 * 94.99645 * 21 2 1 43 43 H 1.07999 * 123.45548 * 359.96508 * 25 24 22 44 44 H 1.08000 * 124.71190 * 180.02562 * 26 25 24 45 45 H 1.08002 * 124.58647 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 1 3.8571 0.4357 -1.2678 7 6 4.0645 -1.2251 -2.6240 8 7 4.1553 -1.3362 -0.1793 9 6 5.4833 -0.8026 0.1513 10 6 6.0558 -1.5667 1.3172 11 8 5.4202 -2.4676 1.8227 12 7 7.2745 -1.2497 1.7976 13 6 7.7951 -1.9445 2.8586 14 1 7.2288 -2.7461 3.3092 15 6 9.0513 -1.6173 3.3542 16 7 9.5506 -2.2836 4.3709 17 14 10.0305 -0.2303 2.5752 18 1 9.7031 1.0490 3.2543 19 1 11.4823 -0.5088 2.7173 20 1 9.6847 -0.1287 1.1346 21 7 2.0183 -0.6906 1.1962 22 6 2.1470 -0.0183 2.3571 23 8 1.8573 1.1618 2.4118 24 6 2.6371 -0.7122 3.5590 25 6 2.8041 -0.0655 4.8396 26 6 3.2579 -0.8843 5.7810 27 16 3.4959 -2.4978 5.1329 28 6 2.9794 -2.0285 3.5779 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.7722 -2.2743 -2.6699 35 1 3.6263 -0.6887 -3.4657 36 1 5.1507 -1.1478 -2.6702 37 1 4.1998 -2.3269 -0.3655 38 1 6.1419 -0.9073 -0.7109 39 1 5.3959 0.2513 0.4157 40 1 7.7830 -0.5295 1.3931 41 1 10.4273 -2.0550 4.7171 42 1 2.2490 -1.6318 1.1526 43 1 2.5826 0.9771 5.0135 44 1 3.4500 -0.5982 6.8046 45 1 2.9263 -2.6881 2.7243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133632996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -60.347380 kcal Electronic energy + Delta-G solvation = -28462.035380 eV Core-core repulsion = 24605.261607 eV Total energy + Delta-G solvation = -3856.773773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.89881 -40.16361 -38.57301 -37.51132 -36.09039 -35.66908 -33.64034 -32.94744 -31.48885 -30.04415 -27.99371 -27.58735 -25.85535 -25.39324 -23.10296 -21.78058 -21.53707 -21.13007 -20.17926 -19.98391 -18.85008 -17.91255 -17.56599 -17.09499 -16.77000 -16.38000 -15.98027 -15.71042 -15.54690 -15.38138 -14.96080 -14.73944 -14.41492 -14.27663 -14.06890 -13.89820 -13.79176 -13.56273 -13.53309 -13.31029 -13.26402 -13.05865 -12.92125 -12.77027 -12.54774 -12.36556 -12.17517 -11.96827 -11.93319 -11.68260 -11.58054 -11.42993 -10.74820 -10.26783 -10.14423 -9.95801 -9.77622 -9.24799 -9.07992 -8.34570 -5.91142 0.02622 0.77390 1.12151 1.17822 1.28288 1.33828 1.40516 2.06482 2.24122 2.45525 2.62823 2.82066 3.23409 3.51616 3.74802 4.00202 4.11617 4.18999 4.24437 4.32379 4.40444 4.43554 4.45325 4.55058 4.60100 4.62413 4.66794 4.82375 4.89526 4.92651 5.00012 5.05623 5.09576 5.23519 5.30186 5.32963 5.42060 5.43521 5.59730 5.82482 6.01039 6.13290 6.53444 6.67301 6.83703 6.97877 7.48414 7.50066 8.04368 8.82504 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.005017 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.677857 B = 5579.154103 C = 7657.572977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.148 3.852 3 H 0.060 0.940 4 C -0.104 4.104 5 C 0.083 3.917 6 H 0.071 0.929 7 C -0.175 4.175 8 N -0.665 5.665 9 C 0.063 3.937 10 C 0.456 3.544 11 O -0.582 6.582 12 N -0.602 5.602 13 C -0.307 4.307 14 H 0.068 0.932 15 C -0.013 4.013 16 N -0.934 5.934 17 Si 0.949 3.051 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.237 1.237 21 N -0.675 5.675 22 C 0.580 3.420 23 O -0.598 6.598 24 C -0.188 4.188 25 C -0.108 4.108 26 C -0.244 4.244 27 S 0.192 5.808 28 C -0.165 4.165 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.347 0.653 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.382 0.618 41 H 0.275 0.725 42 H 0.409 0.591 43 H 0.146 0.854 44 H 0.187 0.813 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.737 3.276 -12.387 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.079 0.921 4 C -0.142 4.142 5 C -0.027 4.027 6 H 0.090 0.910 7 C -0.234 4.234 8 N -0.297 5.297 9 C -0.070 4.070 10 C 0.243 3.757 11 O -0.464 6.464 12 N -0.244 5.244 13 C -0.437 4.437 14 H 0.086 0.914 15 C -0.211 4.211 16 N -0.576 5.576 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.161 1.161 21 N -0.325 5.325 22 C 0.367 3.633 23 O -0.482 6.482 24 C -0.206 4.206 25 C -0.137 4.137 26 C -0.379 4.379 27 S 0.457 5.543 28 C -0.304 4.304 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.167 0.833 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.216 0.784 41 H 0.084 0.916 42 H 0.247 0.753 43 H 0.164 0.836 44 H 0.204 0.796 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.048 2.438 -10.816 18.692 hybrid contribution 1.482 1.311 -1.093 2.260 sum -13.566 3.749 -11.909 18.437 Atomic orbital electron populations 1.22143 0.94826 1.02518 1.02065 1.20930 0.93768 0.96473 0.84494 0.92132 1.21895 0.93712 1.01937 0.96667 1.21689 0.94901 0.98042 0.88071 0.91043 1.22422 1.01007 1.01812 0.98122 1.60225 1.20568 1.08394 1.40543 1.21530 0.91565 0.98821 0.95048 1.20708 0.81520 0.86406 0.87091 1.90482 1.60109 1.33569 1.62217 1.42122 1.17388 1.33742 1.31120 1.18983 1.01156 1.15285 1.08233 0.91370 1.25863 0.97736 1.00679 0.96826 1.69776 1.18985 1.42659 1.26145 0.85582 0.78426 0.78714 0.80178 1.19229 1.20273 1.16060 1.45678 1.64474 1.14430 1.07930 1.17621 0.76594 0.85559 0.83534 1.90679 1.54096 1.17168 1.86222 1.20327 1.10897 0.93650 0.95690 1.21156 1.00774 1.00902 0.90886 1.25715 1.09697 0.97448 1.05031 1.83102 1.61212 1.10361 0.99599 1.25637 1.01572 0.99394 1.03779 0.91523 0.94808 0.89716 0.90101 0.87517 0.91871 0.90451 0.93441 0.83328 0.91538 0.89582 0.78404 0.91587 0.75276 0.83605 0.79625 0.80814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.48 71.98 0.68 -2.20 16 2 C 0.15 3.10 2.57 44.99 0.12 3.22 16 3 H 0.06 1.56 7.58 -2.39 -0.02 1.54 16 4 C -0.10 -1.46 4.54 30.60 0.14 -1.32 16 5 C 0.08 1.40 2.59 44.92 0.12 1.51 16 6 H 0.07 1.34 7.80 -2.38 -0.02 1.32 16 7 C -0.17 -2.35 9.16 71.98 0.66 -1.69 16 8 N -0.66 -15.62 3.48 -495.59 -1.72 -17.34 16 9 C 0.06 1.81 5.96 85.56 0.51 2.32 16 10 C 0.46 18.63 7.82 87.65 0.69 19.32 16 11 O -0.58 -26.63 14.72 -3.06 -0.05 -26.67 16 12 N -0.60 -27.31 5.09 -306.99 -1.56 -28.87 16 13 C -0.31 -17.14 10.16 84.04 0.85 -16.29 16 14 H 0.07 4.44 7.39 -2.91 -0.02 4.42 16 15 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 16 N -0.93 -55.41 13.96 21.66 0.30 -55.11 16 17 Si 0.95 39.60 27.74 68.60 1.90 41.50 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.24 -8.47 6.52 99.48 0.65 -7.82 16 21 N -0.68 -17.86 3.77 -446.03 -1.68 -19.54 16 22 C 0.58 20.14 7.76 86.60 0.67 20.82 16 23 O -0.60 -24.16 16.46 -4.14 -0.07 -24.22 16 24 C -0.19 -6.64 5.98 -19.87 -0.12 -6.76 16 25 C -0.11 -3.70 10.10 22.67 0.23 -3.47 16 26 C -0.24 -7.65 11.12 66.64 0.74 -6.91 16 27 S 0.19 6.26 23.02 -56.49 -1.30 4.96 16 28 C -0.16 -5.55 9.50 67.30 0.64 -4.91 16 29 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.73 7.45 -2.39 -0.02 0.71 16 37 H 0.35 8.27 8.17 -89.70 -0.73 7.53 16 38 H 0.07 1.63 7.44 -2.39 -0.02 1.61 16 39 H 0.09 2.49 8.06 -2.38 -0.02 2.47 16 40 H 0.38 15.16 5.76 -92.71 -0.53 14.63 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.41 10.28 6.09 -92.71 -0.56 9.71 16 43 H 0.15 4.83 8.06 -2.91 -0.02 4.80 16 44 H 0.19 4.72 8.06 -2.91 -0.02 4.69 16 45 H 0.17 5.52 6.85 -2.91 -0.02 5.50 16 Total: -1.00 -72.34 385.20 1.36 -70.98 By element: Atomic # 1 Polarization: 51.76 SS G_CDS: -0.86 Total: 50.90 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 6.39 Total: 3.41 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -4.66 Total: -120.87 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.11 Total: -50.90 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.90 Total: 41.50 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.30 Total: 4.96 kcal Total: -72.34 1.36 -70.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133632996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.636 kcal (2) G-P(sol) polarization free energy of solvation -72.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds