Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47143 * 2 1 4 4 C 1.52995 * 109.47341 * 239.99588 * 2 1 3 5 5 C 1.50702 * 109.47096 * 65.00097 * 4 2 1 6 6 C 1.33381 * 125.20592 * 89.99839 * 5 4 2 7 7 C 1.38427 * 114.92374 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 C 1.50701 * 109.47018 * 119.99524 * 2 1 3 11 11 O 1.21279 * 120.00183 * 119.99962 * 10 2 1 12 12 N 1.34776 * 120.00288 * 300.00195 * 10 2 1 13 13 C 1.46498 * 120.00288 * 180.02562 * 12 10 2 14 14 C 1.52995 * 109.47117 * 179.97438 * 13 12 10 15 15 N 1.46904 * 109.47032 * 180.02562 * 14 13 12 16 16 C 1.46901 * 111.00134 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47244 * 179.97438 * 16 15 14 18 18 O 1.21288 * 120.00377 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99929 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00028 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99891 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00020 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00272 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00186 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47335 * 90.00038 * 24 22 20 26 26 H 1.48503 * 109.47057 * 209.99977 * 24 22 20 27 27 H 1.48497 * 109.47007 * 329.99806 * 24 22 20 28 28 H 1.09003 * 109.46840 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47104 * 299.99930 * 1 2 3 30 30 H 1.08999 * 109.46998 * 60.00417 * 1 2 3 31 31 H 1.08996 * 109.46856 * 305.00042 * 4 2 1 32 32 H 1.08996 * 109.47050 * 185.00185 * 4 2 1 33 33 H 1.08002 * 122.53744 * 359.94345 * 6 5 4 34 34 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 35 35 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 36 36 H 0.96998 * 119.99934 * 359.97438 * 12 10 2 37 37 H 1.09005 * 109.46903 * 299.99768 * 13 12 10 38 38 H 1.08997 * 109.47070 * 60.00001 * 13 12 10 39 39 H 1.08997 * 109.47338 * 299.99622 * 14 13 12 40 40 H 1.09001 * 109.47586 * 59.99886 * 14 13 12 41 41 H 1.00900 * 111.00409 * 56.04371 * 15 14 13 42 42 H 1.09002 * 109.47023 * 299.99404 * 16 15 14 43 43 H 1.08997 * 109.47335 * 59.99309 * 16 15 14 44 44 H 0.97005 * 120.00205 * 359.97438 * 19 17 16 45 45 H 0.97000 * 120.00311 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 6 2.3692 1.0175 -3.0480 7 6 1.7981 1.5928 -4.1701 8 6 0.6040 1.1028 -4.5068 9 16 0.1455 -0.1631 -3.3751 10 6 2.0323 -0.7103 1.2305 11 8 2.7296 -1.6964 1.1194 12 7 1.7067 -0.2498 2.4546 13 6 2.1955 -0.9400 3.6508 14 6 1.6859 -0.2184 4.9000 15 7 2.1765 -0.9101 6.0995 16 6 1.7054 -0.2440 7.3211 17 6 2.2270 -0.9805 8.5279 18 8 2.9223 -1.9639 8.3846 19 7 1.9208 -0.5465 9.7666 20 6 2.3948 -1.2169 10.8646 21 1 3.0133 -2.0930 10.7369 22 6 2.0796 -0.7691 12.1416 23 7 2.5336 -1.4119 13.1940 24 14 1.0104 0.7466 12.3624 25 1 -0.4169 0.3413 12.4215 26 1 1.3822 1.4349 13.6247 27 1 1.2162 1.6687 11.2167 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2949 32 1 3.1263 -0.7995 -1.2054 33 1 3.3311 1.3238 -2.6640 34 1 2.2806 2.3817 -4.7279 35 1 0.0105 1.4317 -5.3470 36 1 1.1494 0.5390 2.5436 37 1 1.8325 -1.9678 3.6511 38 1 3.2855 -0.9395 3.6507 39 1 2.0492 0.8092 4.8996 40 1 0.5959 -0.2184 4.9004 41 1 3.1831 -0.9799 6.0905 42 1 2.0682 0.7837 7.3375 43 1 0.6156 -0.2449 7.3383 44 1 1.3649 0.2402 9.8813 45 1 2.3138 -1.0991 14.0855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134555330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -43.573479 kcal Electronic energy + Delta-G solvation = -25129.273840 eV Core-core repulsion = 21273.227438 eV Total energy + Delta-G solvation = -3856.046402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.29743 -38.56023 -38.34812 -36.49393 -35.19012 -34.47024 -33.82341 -31.69031 -30.73776 -29.29820 -26.93600 -26.33505 -24.69485 -23.72848 -22.72375 -22.09028 -20.32663 -19.47024 -19.41373 -18.40701 -17.90903 -17.03120 -16.36422 -16.31335 -15.94519 -15.79152 -15.55977 -15.00158 -14.67374 -14.62075 -13.99336 -13.77499 -13.70203 -13.53880 -13.26629 -13.10640 -13.03400 -12.85255 -12.60916 -12.43543 -12.32615 -12.22223 -11.92020 -11.73781 -11.59134 -11.53977 -11.42855 -11.17215 -11.10996 -10.61829 -10.07263 -9.99148 -9.59543 -9.31931 -9.06914 -8.86030 -8.65349 -8.26670 -8.19418 -6.32664 -3.84395 0.55582 1.20441 1.58321 2.30647 2.37017 2.81112 3.00075 3.04991 3.13328 3.70796 4.05143 4.08794 4.25228 4.34433 4.44267 4.60105 4.67460 4.75293 4.78042 4.90822 5.00422 5.01098 5.13652 5.19999 5.25577 5.28167 5.29631 5.38779 5.53768 5.62393 5.66442 5.73011 5.74163 5.76296 5.82337 5.87232 5.90453 6.07025 6.14410 6.94585 7.19261 7.45123 7.55960 7.94173 8.12529 8.57563 8.93122 9.40236 9.79993 10.80413 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036040 B = 0.001386 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.737863 B =20193.287551 C =20556.704830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 H 0.101 0.899 4 C -0.032 4.032 5 C -0.168 4.168 6 C -0.141 4.141 7 C -0.133 4.133 8 C -0.219 4.219 9 S 0.099 5.901 10 C 0.517 3.483 11 O -0.536 6.536 12 N -0.728 5.728 13 C 0.119 3.881 14 C 0.050 3.950 15 N -0.665 5.665 16 C 0.050 3.950 17 C 0.449 3.551 18 O -0.563 6.563 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.400 0.600 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.354 0.646 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.370 0.630 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 11.559 -34.560 37.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 H 0.119 0.881 4 C -0.072 4.072 5 C -0.285 4.285 6 C -0.171 4.171 7 C -0.163 4.163 8 C -0.355 4.355 9 S 0.362 5.638 10 C 0.303 3.697 11 O -0.412 6.412 12 N -0.380 5.380 13 C -0.005 4.005 14 C -0.080 4.080 15 N -0.299 5.299 16 C -0.083 4.083 17 C 0.234 3.766 18 O -0.445 6.445 19 N -0.229 5.229 20 C -0.435 4.435 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.180 0.820 36 H 0.234 0.766 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.174 0.826 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.985 8.724 -34.346 36.325 hybrid contribution 0.591 3.478 0.284 3.539 sum -7.394 12.201 -34.062 36.929 Atomic orbital electron populations 1.21932 0.92584 1.03228 1.03185 1.21295 0.97985 1.01001 0.92363 0.88112 1.19968 1.02566 0.97422 0.87197 1.24499 0.98436 1.03137 1.02429 1.20176 1.01874 0.97931 0.97131 1.20186 0.95537 1.02316 0.98269 1.25653 1.01444 1.03180 1.05214 1.84394 1.20305 1.37138 1.21958 1.20522 0.80105 0.84604 0.84456 1.90740 1.37601 1.26092 1.86745 1.45913 1.54026 1.32240 1.05796 1.21292 0.99547 0.97238 0.82409 1.22080 1.00942 0.95184 0.89832 1.59910 1.17989 1.52510 0.99478 1.21700 1.01131 0.95512 0.89939 1.19668 0.85834 0.87480 0.83603 1.90578 1.40821 1.27619 1.85468 1.42197 1.47428 1.27485 1.05813 1.19443 1.30026 1.11554 0.82462 0.86244 1.25038 0.97842 0.98098 0.95135 1.69623 1.44451 1.39738 0.98231 0.86663 0.81254 0.82850 0.78541 1.19589 1.20179 1.19568 0.91743 0.91736 0.90909 0.89835 0.88872 0.84244 0.84363 0.82024 0.76634 0.90081 0.91277 0.94916 0.90443 0.82603 0.93609 0.89334 0.79690 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.82 37.16 0.33 -0.50 16 2 C -0.10 -0.69 2.71 -91.77 -0.25 -0.94 16 3 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.03 -0.24 4.53 -27.88 -0.13 -0.36 16 5 C -0.17 -1.16 5.08 -36.00 -0.18 -1.34 16 6 C -0.14 -0.91 10.05 -41.21 -0.41 -1.33 16 7 C -0.13 -0.78 10.18 -41.21 -0.42 -1.20 16 8 C -0.22 -1.27 11.23 29.04 0.33 -0.94 16 9 S 0.10 0.63 21.89 -107.50 -2.35 -1.72 16 10 C 0.52 5.04 7.15 -10.99 -0.08 4.96 16 11 O -0.54 -7.52 15.92 5.56 0.09 -7.43 16 12 N -0.73 -5.96 5.45 -60.30 -0.33 -6.29 16 13 C 0.12 1.25 5.93 -4.05 -0.02 1.22 16 14 C 0.05 0.51 5.80 -3.82 -0.02 0.49 16 15 N -0.67 -9.80 6.12 -115.06 -0.70 -10.51 16 16 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 17 C 0.45 10.04 7.82 -10.99 -0.09 9.96 16 18 O -0.56 -15.09 15.78 5.55 0.09 -15.01 16 19 N -0.59 -13.88 5.09 -10.97 -0.06 -13.93 16 20 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 21 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16 24 Si 0.88 19.12 27.73 -169.99 -4.71 14.41 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.30 6.52 56.52 0.37 -4.94 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.27 7.56 -51.93 -0.39 -0.12 16 30 H 0.07 0.38 6.17 -51.93 -0.32 0.06 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.76 7.95 -51.93 -0.41 0.34 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 35 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.40 2.11 7.89 -40.82 -0.32 1.79 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.35 5.46 8.43 -39.29 -0.33 5.13 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -35.02 390.74 -9.19 -44.21 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.64 Total: 12.21 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.23 Total: 3.03 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.31 Total: -55.59 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.18 Total: -22.44 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.41 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.35 Total: -1.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.02 -9.19 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134555330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.641 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds