Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47287 * 2 1 4 4 C 1.53005 * 109.46758 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.46948 * 294.99875 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 C 1.50697 * 109.47101 * 239.99480 * 2 1 3 11 11 O 1.21287 * 119.99950 * 240.00226 * 10 2 1 12 12 N 1.34784 * 120.00234 * 60.00177 * 10 2 1 13 13 C 1.46490 * 120.00127 * 179.97438 * 12 10 2 14 14 C 1.52998 * 109.47267 * 180.02562 * 13 12 10 15 15 N 1.46894 * 109.47594 * 180.02562 * 14 13 12 16 16 C 1.46897 * 111.00464 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47365 * 180.02562 * 16 15 14 18 18 O 1.21289 * 120.00287 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00034 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00165 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99923 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00131 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99832 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00140 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46889 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47347 * 120.00114 * 24 22 20 27 27 H 1.48504 * 109.47269 * 240.00308 * 24 22 20 28 28 H 1.09000 * 109.47026 * 300.00465 * 1 2 3 29 29 H 1.09004 * 109.46791 * 60.00524 * 1 2 3 30 30 H 1.09003 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46850 * 175.00116 * 4 2 1 32 32 H 1.08995 * 109.47365 * 55.00124 * 4 2 1 33 33 H 1.08001 * 122.53741 * 0.05729 * 6 5 4 34 34 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 35 35 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 36 36 H 0.97005 * 119.99256 * 359.97438 * 12 10 2 37 37 H 1.09004 * 109.47049 * 300.00326 * 13 12 10 38 38 H 1.09003 * 109.47343 * 59.99865 * 13 12 10 39 39 H 1.08999 * 109.46857 * 299.99943 * 14 13 12 40 40 H 1.09003 * 109.47104 * 59.99652 * 14 13 12 41 41 H 1.00903 * 111.00096 * 56.04285 * 15 14 13 42 42 H 1.09000 * 109.46818 * 299.99788 * 16 15 14 43 43 H 1.08992 * 109.47321 * 59.99675 * 16 15 14 44 44 H 0.96996 * 119.99992 * 0.02562 * 19 17 16 45 45 H 0.97005 * 119.99908 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 6 0.5065 -0.1092 3.1577 7 6 0.3570 0.7225 4.2541 8 6 1.3681 1.5678 4.4604 9 16 2.6007 1.3245 3.2295 10 6 2.0323 -0.7105 -1.2304 11 8 2.7296 -1.6966 -1.1190 12 7 1.7068 -0.2502 -2.4546 13 6 2.1956 -0.9405 -3.6506 14 6 1.6861 -0.2191 -4.8999 15 7 2.1756 -0.9117 -6.0993 16 6 1.7056 -0.2451 -7.3210 17 6 2.2261 -0.9825 -8.5277 18 8 2.9207 -1.9664 -8.3842 19 7 1.9197 -0.5488 -9.7665 20 6 2.3937 -1.2194 -10.8643 21 1 3.0122 -2.0955 -10.7365 22 6 2.0774 -0.7726 -12.1414 23 7 1.3244 0.2931 -12.2969 24 14 2.7226 -1.6867 -13.6372 25 1 3.5402 -2.8447 -13.1950 26 1 1.5798 -2.1709 -14.4525 27 1 3.5603 -0.7716 -14.4534 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1263 -0.7995 1.2057 32 1 1.6054 -1.7198 1.2953 33 1 -0.2389 -0.8379 2.8754 34 1 -0.5143 0.6924 4.8915 35 1 1.4224 2.2897 5.2618 36 1 1.1488 0.5383 -2.5436 37 1 3.2856 -0.9401 -3.6504 38 1 1.8326 -1.9683 -3.6507 39 1 0.5961 -0.2192 -4.9003 40 1 2.0493 0.8086 -4.8996 41 1 1.9059 -1.8839 -6.0909 42 1 0.6157 -0.2445 -7.3382 43 1 2.0697 0.7821 -7.3375 44 1 1.3645 0.2382 -9.8813 45 1 1.1039 0.6052 -13.1885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134555331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -51.128387 kcal Electronic energy + Delta-G solvation = -25075.301800 eV Core-core repulsion = 21218.927792 eV Total energy + Delta-G solvation = -3856.374008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27438 -38.44636 -38.29455 -36.40047 -35.10435 -34.40466 -33.75496 -31.25906 -30.64253 -29.14391 -27.19410 -26.15151 -24.51268 -23.81425 -22.73036 -22.02507 -20.18087 -19.66859 -19.29538 -17.93689 -17.77313 -17.02797 -16.30789 -16.18338 -16.08344 -15.77870 -15.44569 -14.79738 -14.53532 -14.46016 -14.00861 -13.85645 -13.69055 -13.41723 -13.31152 -13.10794 -13.04020 -12.82035 -12.47860 -12.32959 -12.29773 -11.95395 -11.65684 -11.53826 -11.47713 -11.46511 -11.41307 -11.07490 -11.06033 -10.34904 -10.23916 -10.02330 -9.53615 -9.27698 -9.04431 -8.87572 -8.52111 -8.14789 -7.97999 -6.43396 -3.84189 0.58033 1.22903 1.61012 2.32201 2.40310 2.85852 3.15719 3.26589 3.34149 3.88294 4.07785 4.19206 4.34331 4.41076 4.49497 4.62623 4.68865 4.81715 4.92841 5.00102 5.05174 5.13829 5.16155 5.24507 5.26915 5.29424 5.36385 5.41788 5.65432 5.69948 5.70599 5.75664 5.81289 5.88348 5.89721 5.92820 6.08944 6.16854 6.24459 7.07508 7.23815 7.54234 7.55001 7.97667 8.04797 8.59278 9.16449 9.52192 10.03470 10.74376 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.043629 B = 0.001323 C = 0.001313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.622789 B =21161.077838 C =21327.754254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.032 4.032 5 C -0.167 4.167 6 C -0.140 4.140 7 C -0.133 4.133 8 C -0.218 4.218 9 S 0.097 5.903 10 C 0.517 3.483 11 O -0.536 6.536 12 N -0.727 5.727 13 C 0.119 3.881 14 C 0.050 3.950 15 N -0.666 5.666 16 C 0.053 3.947 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.400 0.600 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.032 0.968 40 H 0.077 0.923 41 H 0.352 0.648 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.019 6.560 32.168 33.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 H 0.117 0.883 4 C -0.071 4.071 5 C -0.284 4.284 6 C -0.170 4.170 7 C -0.164 4.164 8 C -0.353 4.353 9 S 0.360 5.640 10 C 0.303 3.697 11 O -0.413 6.413 12 N -0.379 5.379 13 C -0.005 4.005 14 C -0.081 4.081 15 N -0.299 5.299 16 C -0.080 4.080 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.180 0.820 36 H 0.234 0.766 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.089 6.243 31.853 32.606 hybrid contribution -2.718 -0.190 -0.611 2.793 sum -5.807 6.053 31.242 32.349 Atomic orbital electron populations 1.21861 0.92485 1.03026 1.03069 1.21293 0.98094 1.00922 0.92375 0.88266 1.19960 1.02335 0.97587 0.87256 1.24503 0.98708 1.02730 1.02508 1.20165 0.98136 1.02307 0.96412 1.20189 1.00105 0.97008 0.99087 1.25626 0.98627 1.06377 1.04679 1.84436 1.22512 1.34223 1.22839 1.20523 0.80092 0.84626 0.84471 1.90738 1.37589 1.26187 1.86758 1.45920 1.53926 1.32280 1.05796 1.21296 1.00606 0.96100 0.82457 1.22077 0.97127 0.98992 0.89856 1.59919 1.63519 1.06876 0.99573 1.21666 0.97517 0.99007 0.89816 1.19776 0.86080 0.87586 0.84058 1.90535 1.41745 1.28519 1.85780 1.41861 1.46091 1.27780 1.04262 1.19769 1.29078 1.10635 0.83403 0.87819 1.25261 0.96930 0.96589 0.99134 1.69621 1.37153 1.23576 1.23977 0.85795 0.78514 0.79359 0.80660 1.19176 1.20775 1.20725 0.90886 0.91962 0.91849 0.89663 0.89086 0.84242 0.84375 0.82028 0.76609 0.90152 0.91320 0.94953 0.90475 0.82789 0.93727 0.89462 0.77464 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.78 37.16 0.33 -0.46 16 2 C -0.10 -0.73 2.71 -91.77 -0.25 -0.98 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.03 -0.24 4.53 -27.88 -0.13 -0.37 16 5 C -0.17 -1.18 5.27 -36.00 -0.19 -1.37 16 6 C -0.14 -0.89 8.60 -41.21 -0.35 -1.24 16 7 C -0.13 -0.79 10.18 -41.21 -0.42 -1.21 16 8 C -0.22 -1.29 11.23 29.04 0.33 -0.97 16 9 S 0.10 0.66 23.33 -107.50 -2.51 -1.85 16 10 C 0.52 5.24 7.15 -10.98 -0.08 5.16 16 11 O -0.54 -7.72 15.92 5.55 0.09 -7.63 16 12 N -0.73 -6.33 5.45 -60.30 -0.33 -6.66 16 13 C 0.12 1.32 5.93 -4.05 -0.02 1.29 16 14 C 0.05 0.55 5.80 -3.83 -0.02 0.53 16 15 N -0.67 -10.38 6.13 -115.07 -0.70 -11.09 16 16 C 0.05 0.90 6.17 -4.98 -0.03 0.86 16 17 C 0.44 10.30 7.82 -10.99 -0.09 10.22 16 18 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 19 N -0.56 -14.17 5.29 -10.97 -0.06 -14.23 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 24 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.07 0.36 6.40 -51.93 -0.33 0.03 16 29 H 0.06 0.27 7.56 -51.93 -0.39 -0.13 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.75 7.95 -51.93 -0.41 0.34 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.40 2.34 7.89 -40.82 -0.32 2.02 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.35 5.72 8.43 -39.29 -0.33 5.38 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 394.21 15.07 5.94 5.94 Total: -1.00 -33.69 394.21 -9.65 -43.34 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -6.70 Total: 12.10 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.17 Total: 3.49 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.37 Total: -55.63 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.69 -9.65 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134555331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.787 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds