Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47287 * 2 1 4 4 C 1.53005 * 109.46758 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.46948 * 294.99875 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 C 1.50697 * 109.47101 * 239.99480 * 2 1 3 11 11 O 1.21287 * 119.99950 * 240.00226 * 10 2 1 12 12 N 1.34784 * 120.00234 * 60.00177 * 10 2 1 13 13 C 1.46490 * 120.00127 * 179.97438 * 12 10 2 14 14 C 1.52998 * 109.47267 * 180.02562 * 13 12 10 15 15 N 1.46894 * 109.47594 * 180.02562 * 14 13 12 16 16 C 1.46897 * 111.00464 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47365 * 180.02562 * 16 15 14 18 18 O 1.21289 * 120.00287 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00034 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00165 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99923 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00131 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99832 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00140 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46889 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47347 * 120.00114 * 24 22 20 27 27 H 1.48504 * 109.47269 * 240.00308 * 24 22 20 28 28 H 1.09000 * 109.47026 * 300.00465 * 1 2 3 29 29 H 1.09004 * 109.46791 * 60.00524 * 1 2 3 30 30 H 1.09003 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46850 * 175.00116 * 4 2 1 32 32 H 1.08995 * 109.47365 * 55.00124 * 4 2 1 33 33 H 1.08001 * 122.53741 * 0.05729 * 6 5 4 34 34 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 35 35 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 36 36 H 0.97005 * 119.99256 * 359.97438 * 12 10 2 37 37 H 1.09004 * 109.47049 * 300.00326 * 13 12 10 38 38 H 1.09003 * 109.47343 * 59.99865 * 13 12 10 39 39 H 1.08999 * 109.46857 * 299.99943 * 14 13 12 40 40 H 1.09003 * 109.47104 * 59.99652 * 14 13 12 41 41 H 1.00903 * 111.00096 * 56.04285 * 15 14 13 42 42 H 1.09000 * 109.46818 * 299.99788 * 16 15 14 43 43 H 1.08992 * 109.47321 * 59.99675 * 16 15 14 44 44 H 0.96996 * 119.99992 * 0.02562 * 19 17 16 45 45 H 0.97005 * 119.99908 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 6 0.5065 -0.1092 3.1577 7 6 0.3570 0.7225 4.2541 8 6 1.3681 1.5678 4.4604 9 16 2.6007 1.3245 3.2295 10 6 2.0323 -0.7105 -1.2304 11 8 2.7296 -1.6966 -1.1190 12 7 1.7068 -0.2502 -2.4546 13 6 2.1956 -0.9405 -3.6506 14 6 1.6861 -0.2191 -4.8999 15 7 2.1756 -0.9117 -6.0993 16 6 1.7056 -0.2451 -7.3210 17 6 2.2261 -0.9825 -8.5277 18 8 2.9207 -1.9664 -8.3842 19 7 1.9197 -0.5488 -9.7665 20 6 2.3937 -1.2194 -10.8643 21 1 3.0122 -2.0955 -10.7365 22 6 2.0774 -0.7726 -12.1414 23 7 1.3244 0.2931 -12.2969 24 14 2.7226 -1.6867 -13.6372 25 1 3.5402 -2.8447 -13.1950 26 1 1.5798 -2.1709 -14.4525 27 1 3.5603 -0.7716 -14.4534 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1263 -0.7995 1.2057 32 1 1.6054 -1.7198 1.2953 33 1 -0.2389 -0.8379 2.8754 34 1 -0.5143 0.6924 4.8915 35 1 1.4224 2.2897 5.2618 36 1 1.1488 0.5383 -2.5436 37 1 3.2856 -0.9401 -3.6504 38 1 1.8326 -1.9683 -3.6507 39 1 0.5961 -0.2192 -4.9003 40 1 2.0493 0.8086 -4.8996 41 1 1.9059 -1.8839 -6.0909 42 1 0.6157 -0.2445 -7.3382 43 1 2.0697 0.7821 -7.3375 44 1 1.3645 0.2382 -9.8813 45 1 1.1039 0.6052 -13.1885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134555331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -76.066461 kcal Electronic energy + Delta-G solvation = -25076.383196 eV Core-core repulsion = 21218.927792 eV Total energy + Delta-G solvation = -3857.455404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08191 -40.15838 -38.90948 -37.51824 -36.00588 -35.74001 -35.20091 -33.26935 -31.33405 -30.13084 -27.70300 -27.66856 -25.80503 -24.73426 -23.49011 -22.88620 -21.10145 -20.93874 -20.12822 -19.92037 -18.45869 -17.88246 -17.49066 -17.19250 -17.13506 -16.69852 -16.44343 -16.18844 -15.91998 -15.55249 -15.31703 -15.04836 -14.68552 -14.41297 -14.31928 -13.96784 -13.66251 -13.53488 -13.51936 -13.33178 -13.28326 -12.94727 -12.89550 -12.84774 -12.59805 -12.41450 -12.38323 -12.14510 -12.11536 -12.00098 -11.57671 -11.51722 -10.87160 -10.36693 -10.14457 -10.01488 -9.52997 -9.38171 -9.37664 -8.47176 -5.95704 0.10371 0.74241 1.14360 1.36649 1.42390 1.56316 1.59793 1.84783 2.04551 2.06528 2.30787 3.01994 3.20412 3.50119 3.64876 3.79327 3.89122 3.93974 4.11287 4.15300 4.29770 4.31972 4.38405 4.46513 4.50945 4.55048 4.61880 4.70628 4.80070 4.85384 4.90291 4.93971 4.97337 5.09982 5.25458 5.30566 5.36954 5.41392 5.43536 5.63774 5.84823 6.07283 6.32316 6.51484 6.60130 7.12816 7.22087 7.56123 8.11854 8.70322 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.043629 B = 0.001323 C = 0.001313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.622789 B =21161.077838 C =21327.754254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.114 0.886 4 C -0.028 4.028 5 C -0.178 4.178 6 C -0.138 4.138 7 C -0.140 4.140 8 C -0.216 4.216 9 S 0.073 5.927 10 C 0.514 3.486 11 O -0.585 6.585 12 N -0.712 5.712 13 C 0.127 3.873 14 C 0.059 3.941 15 N -0.687 5.687 16 C 0.069 3.931 17 C 0.435 3.565 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.418 0.582 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.346 0.654 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.398 0.602 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.819 8.249 32.957 34.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.132 0.868 4 C -0.068 4.068 5 C -0.295 4.295 6 C -0.168 4.168 7 C -0.170 4.170 8 C -0.351 4.351 9 S 0.336 5.664 10 C 0.302 3.698 11 O -0.465 6.465 12 N -0.365 5.365 13 C 0.002 3.998 14 C -0.070 4.070 15 N -0.320 5.320 16 C -0.064 4.064 17 C 0.222 3.778 18 O -0.512 6.512 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.169 0.831 34 H 0.176 0.824 35 H 0.198 0.802 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.164 0.836 42 H 0.091 0.909 43 H 0.127 0.873 44 H 0.232 0.768 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.934 7.999 32.652 33.978 hybrid contribution -2.159 -0.715 -0.767 2.400 sum -7.093 7.284 31.885 33.467 Atomic orbital electron populations 1.21855 0.90747 1.03078 1.04278 1.21265 0.99308 1.00859 0.90193 0.86796 1.19843 1.01125 0.97578 0.88218 1.24404 0.99218 1.03223 1.02669 1.20390 0.97959 1.02250 0.96218 1.20451 1.00789 0.96660 0.99137 1.25911 0.97934 1.06665 1.04585 1.84513 1.23483 1.34577 1.23822 1.21129 0.79160 0.84014 0.85514 1.90720 1.39839 1.28493 1.87440 1.45752 1.53555 1.32468 1.04731 1.21044 0.99186 0.95943 0.83601 1.22070 0.98529 0.98936 0.87488 1.59886 1.64684 1.06864 1.00557 1.21519 0.98854 0.98730 0.87256 1.20951 0.84609 0.87006 0.85218 1.90504 1.43484 1.30606 1.86628 1.41917 1.46514 1.27975 1.04510 1.19701 1.30530 1.11051 0.85198 0.90474 1.26001 0.96709 0.97213 1.01130 1.69670 1.37218 1.24079 1.25009 0.84890 0.78204 0.78045 0.77318 1.19949 1.19525 1.19594 0.90062 0.90340 0.92383 0.91543 0.89861 0.83080 0.82374 0.80172 0.74503 0.92560 0.92599 0.92394 0.88868 0.83568 0.90885 0.87297 0.76838 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.78 71.98 0.63 -0.58 16 2 C -0.09 -1.21 2.71 -11.54 -0.03 -1.24 16 3 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.03 -0.43 4.53 29.85 0.14 -0.29 16 5 C -0.18 -2.37 5.27 24.59 0.13 -2.24 16 6 C -0.14 -1.53 8.60 21.22 0.18 -1.35 16 7 C -0.14 -1.35 10.18 21.22 0.22 -1.14 16 8 C -0.22 -2.18 11.23 66.72 0.75 -1.43 16 9 S 0.07 0.95 23.33 -56.49 -1.32 -0.37 16 10 C 0.51 10.22 7.15 87.66 0.63 10.85 16 11 O -0.59 -17.44 15.92 -3.05 -0.05 -17.49 16 12 N -0.71 -11.35 5.45 -463.06 -2.52 -13.87 16 13 C 0.13 2.72 5.93 86.38 0.51 3.24 16 14 C 0.06 1.16 5.80 86.30 0.50 1.66 16 15 N -0.69 -20.59 6.13 -517.97 -3.17 -23.77 16 16 C 0.07 2.21 6.17 85.56 0.53 2.73 16 17 C 0.43 20.43 7.82 87.66 0.69 21.12 16 18 O -0.63 -34.92 15.78 -3.06 -0.05 -34.96 16 19 N -0.57 -28.99 5.29 -306.99 -1.62 -30.62 16 20 C -0.34 -19.04 9.68 84.04 0.81 -18.22 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 23 N -0.92 -49.01 13.05 21.66 0.28 -48.72 16 24 Si 0.99 42.85 29.55 68.60 2.03 44.87 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H 0.08 0.60 6.40 -2.39 -0.02 0.59 16 29 H 0.08 0.42 7.56 -2.39 -0.02 0.40 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 1.25 7.95 -2.39 -0.02 1.24 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 34 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.42 3.68 7.89 -92.70 -0.73 2.94 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.35 11.13 8.43 -89.69 -0.76 10.38 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 44 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 45 H 0.28 13.82 8.31 -92.70 -0.77 13.05 16 Total: -1.00 -74.93 394.21 -1.46 -76.39 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -1.19 Total: 35.54 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.15 Total: 13.00 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -7.04 Total: -116.98 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.10 Total: -52.45 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -1.32 Total: -0.37 kcal Total: -74.93 -1.46 -76.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134555331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.323 kcal (2) G-P(sol) polarization free energy of solvation -74.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds