Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 N 1.46497 * 109.46946 * 179.97438 * 11 9 8 13 13 C 1.34778 * 119.99990 * 179.97438 * 12 11 9 14 14 O 1.21703 * 119.99858 * 0.02562 * 13 12 11 15 15 C 1.46579 * 120.00378 * 180.02562 * 13 12 11 16 16 C 1.36652 * 125.46066 * 179.97438 * 15 13 12 17 17 C 1.37474 * 113.29704 * 180.02562 * 16 15 13 18 18 C 1.33820 * 115.10031 * 0.02562 * 17 16 15 19 19 S 1.70620 * 110.95484 * 359.72126 * 18 17 16 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 35 35 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 36 36 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 37 37 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 38 38 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 39 39 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 40 40 H 0.97003 * 120.00324 * 0.02562 * 12 11 9 41 41 H 1.07999 * 123.34844 * 359.97438 * 16 15 13 42 42 H 1.08000 * 122.44977 * 180.02562 * 17 16 15 43 43 H 1.08003 * 124.52010 * 179.97438 * 18 17 16 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 7 6.9096 2.8628 -0.7516 13 6 7.4750 4.0849 -0.8102 14 8 6.8599 5.0173 -1.2934 15 6 8.8306 4.2910 -0.2921 16 6 9.5087 5.4774 -0.2954 17 6 10.7660 5.3866 0.2529 18 6 11.1080 4.1689 0.6901 19 16 9.8425 3.0526 0.4386 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 5.1716 -1.3615 -2.5380 35 1 3.8002 -2.4818 -2.3594 36 1 3.6547 -1.0591 -3.4193 37 1 3.3284 1.4130 -1.9027 38 1 5.5290 2.9085 -2.3301 39 1 4.8577 3.2954 -0.7276 40 1 7.4000 2.1195 -0.3668 41 1 9.0979 6.3949 -0.6903 42 1 11.4293 6.2358 0.3254 43 1 12.0568 3.9263 1.1455 44 1 2.2490 -1.6318 1.1526 45 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136078421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -34.835903 kcal Electronic energy + Delta-G solvation = -26896.080486 eV Core-core repulsion = 23040.412974 eV Total energy + Delta-G solvation = -3855.667513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.28202 -39.38334 -37.70824 -37.03253 -34.84893 -34.41310 -32.43029 -31.15361 -30.27121 -28.34044 -27.72880 -26.42024 -24.92422 -23.43843 -21.98709 -21.18490 -20.52734 -19.93920 -19.65579 -18.99376 -17.41829 -16.82643 -16.59600 -16.01605 -15.86337 -15.70040 -15.07045 -14.91204 -14.59830 -14.18018 -13.88926 -13.58084 -13.46052 -13.22255 -13.17176 -13.03794 -13.02282 -12.56002 -12.51906 -12.18244 -12.11869 -11.73802 -11.73709 -11.19102 -11.07692 -10.75244 -10.52951 -10.49135 -10.32496 -10.13543 -9.94370 -9.81750 -9.43941 -9.13703 -9.10391 -8.90042 -8.87171 -8.85486 -6.99754 -6.05365 -3.05023 0.25366 1.21980 1.63580 2.13744 2.65994 2.72659 3.01962 3.42793 3.53671 3.57403 3.74324 4.54826 4.67915 4.70491 4.75878 5.01004 5.02400 5.16208 5.19613 5.25917 5.30900 5.35693 5.55489 5.63883 5.66463 5.77048 5.82216 5.88823 5.89485 6.01352 6.03067 6.05744 6.18279 6.23660 6.32991 6.44104 6.54239 6.66405 6.81118 6.98344 7.25500 7.56300 7.83711 7.93932 8.28094 8.79890 9.26664 10.12813 10.27323 11.43006 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.003094 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.805066 B = 9048.712647 C =10625.934236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.145 3.855 6 H 0.103 0.897 7 C -0.161 4.161 8 N -0.709 5.709 9 C 0.510 3.490 10 O -0.531 6.531 11 C 0.101 3.899 12 N -0.712 5.712 13 C 0.595 3.405 14 O -0.533 6.533 15 C -0.269 4.269 16 C -0.055 4.055 17 C -0.153 4.153 18 C -0.232 4.232 19 S 0.218 5.782 20 N -0.731 5.731 21 C -0.326 4.326 22 H 0.061 0.939 23 C -0.043 4.043 24 N -0.943 5.943 25 Si 1.076 2.924 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.398 0.602 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.411 0.589 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.170 0.830 44 H 0.365 0.635 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.375 10.297 -13.271 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.041 3.959 6 H 0.121 0.879 7 C -0.220 4.220 8 N -0.360 5.360 9 C 0.295 3.705 10 O -0.408 6.408 11 C -0.026 4.026 12 N -0.366 5.366 13 C 0.381 3.619 14 O -0.412 6.412 15 C -0.389 4.389 16 C -0.089 4.089 17 C -0.184 4.184 18 C -0.370 4.370 19 S 0.486 5.514 20 N -0.375 5.375 21 C -0.457 4.457 22 H 0.079 0.921 23 C -0.241 4.241 24 N -0.589 5.589 25 Si 0.907 3.093 26 H -0.210 1.210 27 H -0.224 1.224 28 H -0.224 1.224 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.232 0.768 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.249 0.751 41 H 0.172 0.828 42 H 0.163 0.837 43 H 0.187 0.813 44 H 0.199 0.801 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.705 8.885 -11.283 18.527 hybrid contribution -0.311 1.421 -1.824 2.333 sum 11.394 10.306 -13.107 20.195 Atomic orbital electron populations 1.22441 0.99416 1.00741 0.99941 1.20163 0.91610 0.95524 0.86049 0.93479 1.22200 0.93644 1.02234 0.99070 1.21047 0.95172 0.79862 0.99832 0.87891 1.22186 1.01557 1.00195 0.98018 1.45839 1.16052 1.11939 1.62212 1.20299 0.82575 0.89498 0.78152 1.90722 1.51072 1.56097 1.42877 1.21100 0.85070 0.94788 1.01645 1.45543 1.16609 1.11449 1.63048 1.16868 0.84150 0.82470 0.78430 1.90827 1.63225 1.41294 1.45817 1.24581 1.00177 0.99404 1.14780 1.20792 0.93173 0.97728 0.97202 1.20044 0.97216 0.98167 1.02968 1.25415 1.05228 0.98483 1.07898 1.83428 1.04250 1.10677 1.53058 1.42401 1.79148 1.09656 1.06248 1.19950 1.41725 0.94899 0.89171 0.92111 1.25661 0.99465 0.97481 1.01467 1.70879 1.51458 1.08198 1.28350 0.83303 0.75789 0.74371 0.75857 1.21041 1.22393 1.22384 0.93669 0.92818 0.94548 0.90667 0.91762 0.92449 0.91671 0.92936 0.76804 0.88256 0.87918 0.75069 0.82849 0.83691 0.81299 0.80138 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.18 3.26 2.84 -67.93 -0.19 3.07 16 3 H 0.05 0.90 7.56 -51.93 -0.39 0.51 16 4 C -0.13 -1.91 4.29 -26.73 -0.11 -2.03 16 5 C 0.14 2.18 2.52 -67.93 -0.17 2.01 16 6 H 0.10 2.07 7.05 -51.93 -0.37 1.70 16 7 C -0.16 -2.05 9.48 37.16 0.35 -1.69 16 8 N -0.71 -9.47 4.45 -53.80 -0.24 -9.71 16 9 C 0.51 7.67 7.86 -10.98 -0.09 7.58 16 10 O -0.53 -10.05 15.33 5.56 0.09 -9.96 16 11 C 0.10 1.27 6.15 -5.19 -0.03 1.24 16 12 N -0.71 -9.64 5.52 -62.83 -0.35 -9.98 16 13 C 0.59 8.33 7.78 -12.90 -0.10 8.23 16 14 O -0.53 -8.67 16.84 5.19 0.09 -8.58 16 15 C -0.27 -3.21 6.45 -36.79 -0.24 -3.45 16 16 C -0.06 -0.57 10.01 -40.43 -0.40 -0.98 16 17 C -0.15 -1.27 10.15 -41.41 -0.42 -1.69 16 18 C -0.23 -1.88 10.92 29.18 0.32 -1.56 16 19 S 0.22 2.16 22.16 -107.50 -2.38 -0.23 16 20 N -0.73 -17.56 4.49 -53.43 -0.24 -17.80 16 21 C -0.33 -9.06 9.93 -15.06 -0.15 -9.21 16 22 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 23 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 24 N -0.94 -29.30 13.70 55.49 0.76 -28.54 16 25 Si 1.08 26.48 29.92 -169.99 -5.09 21.39 16 26 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 27 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 4.09 8.60 -40.82 -0.35 3.74 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.41 5.64 6.55 -40.82 -0.27 5.38 16 41 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.37 9.18 6.63 -40.82 -0.27 8.91 16 45 H 0.25 7.76 6.77 -40.82 -0.28 7.48 16 LS Contribution 393.70 15.07 5.93 5.93 Total: -1.00 -35.38 393.70 -9.04 -44.41 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -6.63 Total: 15.39 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -0.98 Total: -2.34 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.07 Total: -66.02 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.09 Total: 21.39 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.38 Total: -0.23 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.38 -9.04 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.579 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds