Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 N 1.46497 * 109.46946 * 179.97438 * 11 9 8 13 13 C 1.34778 * 119.99990 * 179.97438 * 12 11 9 14 14 O 1.21703 * 119.99858 * 0.02562 * 13 12 11 15 15 C 1.46579 * 120.00378 * 180.02562 * 13 12 11 16 16 C 1.36652 * 125.46066 * 179.97438 * 15 13 12 17 17 C 1.37474 * 113.29704 * 180.02562 * 16 15 13 18 18 C 1.33820 * 115.10031 * 0.02562 * 17 16 15 19 19 S 1.70620 * 110.95484 * 359.72126 * 18 17 16 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 35 35 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 36 36 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 37 37 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 38 38 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 39 39 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 40 40 H 0.97003 * 120.00324 * 0.02562 * 12 11 9 41 41 H 1.07999 * 123.34844 * 359.97438 * 16 15 13 42 42 H 1.08000 * 122.44977 * 180.02562 * 17 16 15 43 43 H 1.08003 * 124.52010 * 179.97438 * 18 17 16 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 7 6.9096 2.8628 -0.7516 13 6 7.4750 4.0849 -0.8102 14 8 6.8599 5.0173 -1.2934 15 6 8.8306 4.2910 -0.2921 16 6 9.5087 5.4774 -0.2954 17 6 10.7660 5.3866 0.2529 18 6 11.1080 4.1689 0.6901 19 16 9.8425 3.0526 0.4386 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 5.1716 -1.3615 -2.5380 35 1 3.8002 -2.4818 -2.3594 36 1 3.6547 -1.0591 -3.4193 37 1 3.3284 1.4130 -1.9027 38 1 5.5290 2.9085 -2.3301 39 1 4.8577 3.2954 -0.7276 40 1 7.4000 2.1195 -0.3668 41 1 9.0979 6.3949 -0.6903 42 1 11.4293 6.2358 0.3254 43 1 12.0568 3.9263 1.1455 44 1 2.2490 -1.6318 1.1526 45 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136078421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = -60.604114 kcal Electronic energy + Delta-G solvation = -26897.197880 eV Core-core repulsion = 23040.412974 eV Total energy + Delta-G solvation = -3856.784906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42255 -40.50729 -38.62347 -38.33875 -36.37121 -35.60778 -34.21293 -32.41979 -31.15813 -30.17773 -28.71066 -27.66204 -25.75434 -25.52352 -23.06673 -22.28540 -21.78101 -21.36210 -20.54248 -19.86934 -19.44614 -17.91665 -17.74176 -17.08650 -16.91194 -16.77882 -16.55843 -16.08524 -15.98416 -15.66641 -15.44137 -14.88864 -14.66500 -14.59056 -14.29183 -14.07838 -13.71414 -13.65385 -13.54936 -13.37975 -13.26497 -13.14781 -12.92935 -12.78116 -12.53960 -12.20228 -11.93601 -11.91880 -11.87069 -11.57872 -11.40955 -11.18283 -11.08551 -10.90346 -10.50416 -10.10037 -9.89346 -9.60619 -9.04974 -8.34104 -5.25754 -0.54124 0.44710 0.91813 1.35754 1.47962 1.53441 1.63235 1.67032 1.78877 2.06501 2.33851 2.70701 3.44334 3.51644 3.70466 3.75173 3.87807 4.04583 4.11278 4.21774 4.25859 4.31341 4.32928 4.47039 4.52294 4.61447 4.72187 4.76734 4.84945 4.93846 4.98195 5.01895 5.02346 5.16500 5.17776 5.27277 5.34031 5.34657 5.52188 5.53897 5.64685 6.19175 6.45344 6.54538 6.87791 7.15305 7.16819 8.07046 8.17475 9.18215 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.003094 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.805066 B = 9048.712647 C =10625.934236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.167 3.833 3 H 0.043 0.957 4 C -0.119 4.119 5 C 0.148 3.852 6 H 0.046 0.954 7 C -0.151 4.151 8 N -0.697 5.697 9 C 0.506 3.494 10 O -0.577 6.577 11 C 0.106 3.894 12 N -0.715 5.715 13 C 0.594 3.406 14 O -0.564 6.564 15 C -0.305 4.305 16 C -0.050 4.050 17 C -0.157 4.157 18 C -0.214 4.214 19 S 0.204 5.796 20 N -0.743 5.743 21 C -0.315 4.315 22 H 0.059 0.941 23 C -0.106 4.106 24 N -0.978 5.978 25 Si 1.118 2.882 26 H -0.293 1.293 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.041 0.959 30 H 0.026 0.974 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.416 0.584 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.409 0.591 41 H 0.157 0.843 42 H 0.176 0.824 43 H 0.200 0.800 44 H 0.356 0.644 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.499 11.996 -14.744 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 H 0.061 0.939 4 C -0.157 4.157 5 C 0.043 3.957 6 H 0.065 0.935 7 C -0.209 4.209 8 N -0.349 5.349 9 C 0.292 3.708 10 O -0.456 6.456 11 C -0.021 4.021 12 N -0.369 5.369 13 C 0.382 3.618 14 O -0.445 6.445 15 C -0.425 4.425 16 C -0.084 4.084 17 C -0.187 4.187 18 C -0.352 4.352 19 S 0.472 5.528 20 N -0.385 5.385 21 C -0.447 4.447 22 H 0.077 0.923 23 C -0.298 4.298 24 N -0.627 5.627 25 Si 0.944 3.056 26 H -0.220 1.220 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.254 0.746 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.247 0.753 41 H 0.174 0.826 42 H 0.193 0.807 43 H 0.217 0.783 44 H 0.188 0.812 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.769 10.622 -12.820 20.389 hybrid contribution -0.330 0.944 -1.434 1.748 sum 11.439 11.566 -14.254 21.629 Atomic orbital electron populations 1.22302 0.97841 1.00777 1.00712 1.20475 0.92532 0.95275 0.85763 0.93886 1.22102 0.92871 1.02243 0.98532 1.20851 0.95498 0.80849 0.98478 0.93533 1.22084 1.00580 1.00180 0.98088 1.45729 1.15872 1.11793 1.61529 1.20739 0.82523 0.90167 0.77326 1.90706 1.52497 1.57479 1.44967 1.21168 0.84821 0.92820 1.03269 1.45632 1.16906 1.11409 1.62960 1.17156 0.84828 0.81979 0.77854 1.90791 1.64266 1.41959 1.47486 1.24514 0.99973 1.00811 1.17251 1.21073 0.93832 0.97284 0.96250 1.20319 0.96714 0.99274 1.02415 1.25817 1.05409 0.97629 1.06373 1.83504 1.05013 1.11080 1.53237 1.42602 1.79449 1.09357 1.07081 1.20242 1.39190 0.94863 0.90445 0.92259 1.26914 1.00293 0.97672 1.04886 1.70977 1.54391 1.09400 1.27958 0.82741 0.76754 0.73510 0.72583 1.21955 1.21271 1.20300 0.93997 0.95467 0.90308 0.90543 0.87236 0.94041 0.91214 0.89791 0.74647 0.85600 0.87539 0.75319 0.82563 0.80709 0.78283 0.81199 0.94597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 9.49 71.98 0.68 -4.39 16 2 C 0.17 5.98 2.84 44.99 0.13 6.11 16 3 H 0.04 1.58 7.56 -2.38 -0.02 1.56 16 4 C -0.12 -3.16 4.29 30.60 0.13 -3.03 16 5 C 0.15 4.37 2.52 45.00 0.11 4.48 16 6 H 0.05 1.95 7.05 -2.39 -0.02 1.93 16 7 C -0.15 -3.61 9.48 71.98 0.68 -2.93 16 8 N -0.70 -17.85 4.45 -442.51 -1.97 -19.82 16 9 C 0.51 15.32 7.86 87.66 0.69 16.01 16 10 O -0.58 -22.76 15.33 -3.04 -0.05 -22.81 16 11 C 0.11 2.62 6.15 85.63 0.53 3.15 16 12 N -0.72 -19.78 5.52 -470.91 -2.60 -22.38 16 13 C 0.59 16.89 7.78 86.42 0.67 17.56 16 14 O -0.56 -18.49 16.84 -4.36 -0.07 -18.56 16 15 C -0.31 -7.28 6.45 24.08 0.16 -7.13 16 16 C -0.05 -0.98 10.01 21.72 0.22 -0.76 16 17 C -0.16 -2.24 10.15 21.08 0.21 -2.03 16 18 C -0.21 -2.97 10.92 66.81 0.73 -2.24 16 19 S 0.20 3.96 22.16 -56.49 -1.25 2.70 16 20 N -0.74 -36.20 4.49 -322.94 -1.45 -37.65 16 21 C -0.32 -17.77 9.93 84.03 0.83 -16.94 16 22 H 0.06 3.30 7.83 -2.91 -0.02 3.28 16 23 C -0.11 -6.32 5.50 84.86 0.47 -5.85 16 24 N -0.98 -62.72 13.70 21.65 0.30 -62.42 16 25 Si 1.12 54.14 29.92 68.60 2.05 56.20 16 26 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 27 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 29 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.42 7.50 8.60 -92.71 -0.80 6.70 16 38 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.41 11.75 6.55 -92.71 -0.61 11.14 16 41 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.36 18.53 6.63 -92.71 -0.61 17.92 16 45 H 0.24 15.51 6.77 -92.71 -0.63 14.88 16 Total: -1.00 -80.58 393.70 0.35 -80.23 By element: Atomic # 1 Polarization: 43.36 SS G_CDS: -0.85 Total: 42.51 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.24 Total: 2.01 kcal Atomic # 7 Polarization: -136.55 SS G_CDS: -5.72 Total: -142.28 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.12 Total: -41.38 kcal Atomic # 14 Polarization: 54.14 SS G_CDS: 2.05 Total: 56.20 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.25 Total: 2.70 kcal Total: -80.58 0.35 -80.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.623 kcal (2) G-P(sol) polarization free energy of solvation -80.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds