Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47592 * 2 1 4 4 C 1.53006 * 109.47094 * 240.00500 * 2 1 3 5 5 C 1.52995 * 109.47400 * 174.02058 * 4 2 1 6 6 H 1.09001 * 109.47408 * 304.07412 * 5 4 2 7 7 C 1.52995 * 109.47378 * 184.06975 * 5 4 2 8 8 N 1.46506 * 109.46998 * 64.07228 * 5 4 2 9 9 C 1.34782 * 119.99927 * 206.44692 * 8 5 4 10 10 O 1.21278 * 119.99609 * 5.13487 * 9 8 5 11 11 C 1.50698 * 119.99865 * 185.13338 * 9 8 5 12 12 N 1.46500 * 109.46966 * 184.00836 * 11 9 8 13 13 C 1.34774 * 119.99634 * 180.02562 * 12 11 9 14 14 O 1.21706 * 120.00673 * 0.02562 * 13 12 11 15 15 C 1.46591 * 119.99657 * 180.02562 * 13 12 11 16 16 C 1.36645 * 125.45687 * 180.02562 * 15 13 12 17 17 C 1.37471 * 113.29755 * 179.97438 * 16 15 13 18 18 C 1.33814 * 115.09928 * 359.97438 * 17 16 15 19 19 S 1.70616 * 110.95523 * 359.73348 * 18 17 16 20 20 N 1.46503 * 109.47250 * 120.00684 * 2 1 3 21 21 C 1.36940 * 119.99464 * 270.61208 * 20 2 1 22 22 H 1.07998 * 120.00387 * 350.66602 * 21 20 2 23 23 C 1.38811 * 119.99502 * 170.66252 * 21 20 2 24 24 N 1.31619 * 119.99851 * 178.45752 * 23 21 20 25 25 Si 1.86799 * 120.00325 * 358.45180 * 23 21 20 26 26 H 1.48505 * 109.46650 * 90.85519 * 25 23 21 27 27 H 1.48497 * 109.47532 * 210.85387 * 25 23 21 28 28 H 1.48504 * 109.47290 * 330.85777 * 25 23 21 29 29 H 1.09000 * 109.46758 * 299.99972 * 1 2 3 30 30 H 1.09001 * 109.47433 * 59.99422 * 1 2 3 31 31 H 1.08992 * 109.47539 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46701 * 294.02096 * 4 2 1 33 33 H 1.08996 * 109.47174 * 54.01703 * 4 2 1 34 34 H 1.09000 * 109.47549 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.47208 * 300.00560 * 7 5 4 36 36 H 1.09000 * 109.46760 * 60.00132 * 7 5 4 37 37 H 0.96997 * 119.99729 * 26.44563 * 8 5 4 38 38 H 1.08996 * 109.47049 * 304.01584 * 11 9 8 39 39 H 1.09001 * 109.46789 * 64.01199 * 11 9 8 40 40 H 0.96993 * 119.99949 * 0.02562 * 12 11 9 41 41 H 1.07997 * 123.35018 * 359.97402 * 16 15 13 42 42 H 1.08002 * 122.45054 * 180.02562 * 17 16 15 43 43 H 1.08001 * 124.52394 * 179.97438 * 18 17 16 44 44 H 0.96994 * 120.00506 * 90.61455 * 20 2 1 45 45 H 0.97000 * 120.00002 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5625 -0.5924 -1.3268 6 1 3.8396 0.4616 -1.3057 7 6 4.0624 -1.2252 -2.6270 8 7 4.1695 -1.2798 -0.1843 9 6 5.3756 -0.8899 0.2737 10 8 5.9164 0.0876 -0.1985 11 6 6.0521 -1.6684 1.3725 12 7 7.2949 -0.9937 1.7552 13 6 8.0724 -1.5132 2.7257 14 8 7.7424 -2.5432 3.2839 15 6 9.3156 -0.8378 3.1090 16 6 10.1847 -1.2643 4.0734 17 6 11.2735 -0.4394 4.2275 18 6 11.2976 0.6259 3.4180 19 16 9.9322 0.6461 2.3952 20 7 2.0183 -0.6908 1.1961 21 6 2.2346 0.0113 2.3518 22 1 2.1918 1.0904 2.3441 23 6 2.5088 -0.6641 3.5331 24 7 2.7466 0.0114 4.6374 25 14 2.5400 -2.5317 3.5556 26 1 3.9188 -3.0070 3.2759 27 1 2.1102 -3.0179 4.8913 28 1 1.6159 -3.0548 2.5175 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7666 -1.7751 -1.1975 33 1 1.5918 -0.2729 -2.1360 34 1 5.1472 -1.1338 -2.6820 35 1 3.7853 -2.2792 -2.6481 36 1 3.6108 -0.7137 -3.4770 37 1 3.7033 -2.0156 0.2426 38 1 5.3900 -1.7279 2.2363 39 1 6.2788 -2.6741 1.0186 40 1 7.5581 -0.1731 1.3101 41 1 10.0313 -2.1603 4.6566 42 1 12.0529 -0.6371 4.9485 43 1 12.0792 1.3712 3.4103 44 1 2.1885 -1.6453 1.1695 45 1 2.9378 -0.4605 5.4629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136078422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -23.652711 kcal Electronic energy + Delta-G solvation = -27763.218712 eV Core-core repulsion = 23908.036139 eV Total energy + Delta-G solvation = -3855.182573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.04331 -39.19716 -37.55134 -37.01716 -34.58242 -34.10267 -32.37350 -31.14489 -30.16409 -29.18427 -27.49139 -26.43487 -24.73454 -23.36670 -21.83557 -20.95105 -20.56842 -19.92735 -19.37899 -18.75240 -17.59494 -16.59019 -16.47328 -15.89571 -15.60050 -15.48214 -15.01502 -14.70455 -14.45282 -14.28650 -13.70887 -13.39886 -13.37789 -12.97263 -12.91396 -12.85795 -12.73065 -12.53169 -12.39162 -12.22295 -12.10453 -12.02880 -11.80886 -11.12715 -11.05382 -10.92480 -10.80750 -10.51685 -10.38195 -10.04606 -10.04085 -9.63966 -9.57963 -9.14557 -9.01142 -8.89262 -8.69990 -8.62189 -7.27397 -5.79353 -3.15635 0.43559 1.37969 1.78945 2.32409 2.87578 3.02497 3.27168 3.28629 3.32269 3.44033 3.68594 4.53266 4.77549 4.83129 4.91184 5.03449 5.18793 5.23546 5.25867 5.36097 5.44530 5.48037 5.53597 5.69746 5.78613 5.80200 5.83125 5.84596 6.00318 6.06374 6.10745 6.18096 6.20510 6.27358 6.35491 6.38394 6.42897 6.74833 6.85458 6.96575 7.54493 7.78418 7.98479 8.23643 8.39128 8.49109 9.16299 9.87750 10.07875 11.38948 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.003688 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.124427 B = 7590.361093 C = 8860.535073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.059 0.941 4 C -0.137 4.137 5 C 0.149 3.851 6 H 0.090 0.910 7 C -0.162 4.162 8 N -0.695 5.695 9 C 0.526 3.474 10 O -0.551 6.551 11 C 0.095 3.905 12 N -0.707 5.707 13 C 0.591 3.409 14 O -0.529 6.529 15 C -0.259 4.259 16 C -0.059 4.059 17 C -0.150 4.150 18 C -0.236 4.236 19 S 0.212 5.788 20 N -0.740 5.740 21 C -0.240 4.240 22 H 0.088 0.912 23 C 0.010 3.990 24 N -0.928 5.928 25 Si 0.861 3.139 26 H -0.276 1.276 27 H -0.290 1.290 28 H -0.275 1.275 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.408 0.592 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.168 0.832 44 H 0.352 0.648 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.966 -1.786 -10.556 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.077 0.923 4 C -0.176 4.176 5 C 0.044 3.956 6 H 0.108 0.892 7 C -0.221 4.221 8 N -0.347 5.347 9 C 0.311 3.689 10 O -0.430 6.430 11 C -0.032 4.032 12 N -0.361 5.361 13 C 0.377 3.623 14 O -0.407 6.407 15 C -0.380 4.380 16 C -0.092 4.092 17 C -0.182 4.182 18 C -0.374 4.374 19 S 0.479 5.521 20 N -0.384 5.384 21 C -0.370 4.370 22 H 0.106 0.894 23 C -0.187 4.187 24 N -0.576 5.576 25 Si 0.691 3.309 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.201 1.201 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.235 0.765 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.246 0.754 41 H 0.171 0.829 42 H 0.162 0.838 43 H 0.186 0.814 44 H 0.185 0.815 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.589 -0.651 -11.498 16.338 hybrid contribution 0.388 -2.225 1.567 2.749 sum 11.977 -2.876 -9.931 15.822 Atomic orbital electron populations 1.22410 0.98940 1.00689 1.00495 1.20259 0.91677 0.96071 0.85399 0.92278 1.22276 0.93876 1.01622 0.99822 1.20891 0.92439 0.98034 0.84213 0.89164 1.22214 1.01679 1.00889 0.97306 1.45802 1.18698 1.36945 1.33222 1.20128 0.81763 0.84446 0.82528 1.90621 1.65491 1.26860 1.59986 1.21219 0.86950 0.96079 0.98971 1.45433 1.22668 1.29204 1.38800 1.16874 0.82002 0.84155 0.79315 1.90846 1.72570 1.23702 1.53584 1.24617 1.02394 1.03242 1.07721 1.20798 0.92024 1.00423 0.95993 1.20026 1.00283 0.95344 1.02507 1.25355 1.04650 1.04187 1.03209 1.83252 1.13721 1.20182 1.34907 1.42773 1.79815 1.06476 1.09289 1.19010 1.40630 0.92505 0.84832 0.89422 1.24682 1.02078 0.96539 0.95371 1.69668 1.54191 1.34065 0.99626 0.86944 0.78078 0.88164 0.77694 1.20248 1.21603 1.20117 0.92371 0.94258 0.93805 0.91832 0.90344 0.92468 0.92727 0.91785 0.76510 0.87113 0.88664 0.75399 0.82855 0.83780 0.81432 0.81465 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.52 37.16 0.35 -2.32 16 2 C 0.18 3.02 2.90 -67.93 -0.20 2.82 16 3 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 4 C -0.14 -1.81 4.44 -26.73 -0.12 -1.93 16 5 C 0.15 2.08 2.65 -67.93 -0.18 1.90 16 6 H 0.09 1.45 7.46 -51.93 -0.39 1.06 16 7 C -0.16 -1.84 9.50 37.15 0.35 -1.49 16 8 N -0.70 -10.93 3.78 -53.81 -0.20 -11.13 16 9 C 0.53 9.22 7.87 -10.98 -0.09 9.14 16 10 O -0.55 -10.62 15.28 5.56 0.08 -10.53 16 11 C 0.09 1.66 6.16 -5.19 -0.03 1.63 16 12 N -0.71 -12.10 5.52 -62.83 -0.35 -12.44 16 13 C 0.59 10.47 7.78 -12.89 -0.10 10.37 16 14 O -0.53 -10.99 16.84 5.18 0.09 -10.90 16 15 C -0.26 -3.78 6.45 -36.79 -0.24 -4.01 16 16 C -0.06 -0.76 10.01 -40.44 -0.40 -1.16 16 17 C -0.15 -1.53 10.15 -41.41 -0.42 -1.95 16 18 C -0.24 -2.26 10.92 29.18 0.32 -1.94 16 19 S 0.21 2.42 22.16 -107.50 -2.38 0.04 16 20 N -0.74 -15.53 3.40 -53.42 -0.18 -15.71 16 21 C -0.24 -6.32 10.42 -15.06 -0.16 -6.48 16 22 H 0.09 2.58 8.05 -52.49 -0.42 2.15 16 23 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 24 N -0.93 -28.59 13.97 55.49 0.78 -27.81 16 25 Si 0.86 20.82 27.46 -169.99 -4.67 16.15 16 26 H -0.28 -6.47 6.42 56.52 0.36 -6.10 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.28 -6.16 6.69 56.52 0.38 -5.78 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.40 6.13 6.67 -40.82 -0.27 5.86 16 38 H 0.11 2.27 7.26 -51.93 -0.38 1.90 16 39 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.41 6.59 6.56 -40.82 -0.27 6.32 16 41 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.35 7.12 4.14 -40.82 -0.17 6.95 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -33.38 386.82 -8.59 -41.97 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -6.58 Total: 19.78 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.00 Total: 4.76 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: 0.04 Total: -67.09 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.17 Total: -21.43 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.38 Total: 0.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.38 -8.59 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.319 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds