Wall clock time and date at job start Sat Apr 11 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47592 * 2 1 4 4 C 1.53006 * 109.47094 * 240.00500 * 2 1 3 5 5 C 1.52995 * 109.47400 * 174.02058 * 4 2 1 6 6 H 1.09001 * 109.47408 * 304.07412 * 5 4 2 7 7 C 1.52995 * 109.47378 * 184.06975 * 5 4 2 8 8 N 1.46506 * 109.46998 * 64.07228 * 5 4 2 9 9 C 1.34782 * 119.99927 * 206.44692 * 8 5 4 10 10 O 1.21278 * 119.99609 * 5.13487 * 9 8 5 11 11 C 1.50698 * 119.99865 * 185.13338 * 9 8 5 12 12 N 1.46500 * 109.46966 * 184.00836 * 11 9 8 13 13 C 1.34774 * 119.99634 * 180.02562 * 12 11 9 14 14 O 1.21706 * 120.00673 * 0.02562 * 13 12 11 15 15 C 1.46591 * 119.99657 * 180.02562 * 13 12 11 16 16 C 1.36645 * 125.45687 * 180.02562 * 15 13 12 17 17 C 1.37471 * 113.29755 * 179.97438 * 16 15 13 18 18 C 1.33814 * 115.09928 * 359.97438 * 17 16 15 19 19 S 1.70616 * 110.95523 * 359.73348 * 18 17 16 20 20 N 1.46503 * 109.47250 * 120.00684 * 2 1 3 21 21 C 1.36940 * 119.99464 * 270.61208 * 20 2 1 22 22 H 1.07998 * 120.00387 * 350.66602 * 21 20 2 23 23 C 1.38811 * 119.99502 * 170.66252 * 21 20 2 24 24 N 1.31619 * 119.99851 * 178.45752 * 23 21 20 25 25 Si 1.86799 * 120.00325 * 358.45180 * 23 21 20 26 26 H 1.48505 * 109.46650 * 90.85519 * 25 23 21 27 27 H 1.48497 * 109.47532 * 210.85387 * 25 23 21 28 28 H 1.48504 * 109.47290 * 330.85777 * 25 23 21 29 29 H 1.09000 * 109.46758 * 299.99972 * 1 2 3 30 30 H 1.09001 * 109.47433 * 59.99422 * 1 2 3 31 31 H 1.08992 * 109.47539 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46701 * 294.02096 * 4 2 1 33 33 H 1.08996 * 109.47174 * 54.01703 * 4 2 1 34 34 H 1.09000 * 109.47549 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.47208 * 300.00560 * 7 5 4 36 36 H 1.09000 * 109.46760 * 60.00132 * 7 5 4 37 37 H 0.96997 * 119.99729 * 26.44563 * 8 5 4 38 38 H 1.08996 * 109.47049 * 304.01584 * 11 9 8 39 39 H 1.09001 * 109.46789 * 64.01199 * 11 9 8 40 40 H 0.96993 * 119.99949 * 0.02562 * 12 11 9 41 41 H 1.07997 * 123.35018 * 359.97402 * 16 15 13 42 42 H 1.08002 * 122.45054 * 180.02562 * 17 16 15 43 43 H 1.08001 * 124.52394 * 179.97438 * 18 17 16 44 44 H 0.96994 * 120.00506 * 90.61455 * 20 2 1 45 45 H 0.97000 * 120.00002 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5625 -0.5924 -1.3268 6 1 3.8396 0.4616 -1.3057 7 6 4.0624 -1.2252 -2.6270 8 7 4.1695 -1.2798 -0.1843 9 6 5.3756 -0.8899 0.2737 10 8 5.9164 0.0876 -0.1985 11 6 6.0521 -1.6684 1.3725 12 7 7.2949 -0.9937 1.7552 13 6 8.0724 -1.5132 2.7257 14 8 7.7424 -2.5432 3.2839 15 6 9.3156 -0.8378 3.1090 16 6 10.1847 -1.2643 4.0734 17 6 11.2735 -0.4394 4.2275 18 6 11.2976 0.6259 3.4180 19 16 9.9322 0.6461 2.3952 20 7 2.0183 -0.6908 1.1961 21 6 2.2346 0.0113 2.3518 22 1 2.1918 1.0904 2.3441 23 6 2.5088 -0.6641 3.5331 24 7 2.7466 0.0114 4.6374 25 14 2.5400 -2.5317 3.5556 26 1 3.9188 -3.0070 3.2759 27 1 2.1102 -3.0179 4.8913 28 1 1.6159 -3.0548 2.5175 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7666 -1.7751 -1.1975 33 1 1.5918 -0.2729 -2.1360 34 1 5.1472 -1.1338 -2.6820 35 1 3.7853 -2.2792 -2.6481 36 1 3.6108 -0.7137 -3.4770 37 1 3.7033 -2.0156 0.2426 38 1 5.3900 -1.7279 2.2363 39 1 6.2788 -2.6741 1.0186 40 1 7.5581 -0.1731 1.3101 41 1 10.0313 -2.1603 4.6566 42 1 12.0529 -0.6371 4.9485 43 1 12.0792 1.3712 3.4103 44 1 2.1885 -1.6453 1.1695 45 1 2.9378 -0.4605 5.4629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136078422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:20 Heat of formation + Delta-G solvation = -47.694170 kcal Electronic energy + Delta-G solvation = -27764.261228 eV Core-core repulsion = 23908.036139 eV Total energy + Delta-G solvation = -3856.225089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40927 -40.51291 -38.63376 -38.33585 -36.09482 -35.55961 -34.16504 -32.63016 -31.31820 -30.73883 -28.70886 -27.57032 -25.73793 -25.31481 -23.01650 -22.24415 -21.94162 -21.33075 -20.48354 -19.85273 -19.58111 -17.84616 -17.76896 -17.17372 -16.87489 -16.71157 -16.58663 -16.15981 -15.88374 -15.72812 -14.99163 -14.89065 -14.63479 -14.43543 -14.21791 -14.15737 -14.00497 -13.71914 -13.65646 -13.41783 -13.27860 -13.19808 -12.87809 -12.79710 -12.52503 -12.32531 -12.10468 -11.95884 -11.85767 -11.64846 -11.44373 -11.43259 -11.03870 -10.93340 -10.51585 -10.02279 -9.89625 -9.59003 -9.19289 -7.99233 -5.30619 -0.55087 0.43548 0.91229 1.31338 1.34759 1.37174 1.45588 1.51662 1.71569 2.05325 2.39248 2.48202 3.34144 3.49194 3.66390 3.77196 3.84938 4.09533 4.12149 4.16369 4.28475 4.31535 4.35307 4.51887 4.56342 4.66163 4.81834 4.87036 4.90553 4.97311 4.99859 5.06556 5.10050 5.15269 5.17709 5.33502 5.37238 5.39387 5.59002 5.63755 5.85497 6.20975 6.23311 6.45193 6.88862 7.12193 7.14137 7.88104 8.07605 9.22638 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.003688 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.124427 B = 7590.361093 C = 8860.535073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.035 0.965 4 C -0.123 4.123 5 C 0.144 3.856 6 H 0.065 0.935 7 C -0.152 4.152 8 N -0.690 5.690 9 C 0.523 3.477 10 O -0.572 6.572 11 C 0.095 3.905 12 N -0.707 5.707 13 C 0.586 3.414 14 O -0.572 6.572 15 C -0.308 4.308 16 C -0.053 4.053 17 C -0.157 4.157 18 C -0.211 4.211 19 S 0.220 5.780 20 N -0.737 5.737 21 C -0.209 4.209 22 H 0.045 0.955 23 C -0.057 4.057 24 N -0.984 5.984 25 Si 0.924 3.076 26 H -0.269 1.269 27 H -0.310 1.310 28 H -0.237 1.237 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.402 0.598 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.412 0.588 41 H 0.150 0.850 42 H 0.177 0.823 43 H 0.206 0.794 44 H 0.361 0.639 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.585 -2.780 -13.219 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.053 0.947 4 C -0.161 4.161 5 C 0.040 3.960 6 H 0.083 0.917 7 C -0.210 4.210 8 N -0.341 5.341 9 C 0.309 3.691 10 O -0.453 6.453 11 C -0.032 4.032 12 N -0.360 5.360 13 C 0.375 3.625 14 O -0.453 6.453 15 C -0.428 4.428 16 C -0.088 4.088 17 C -0.187 4.187 18 C -0.349 4.349 19 S 0.488 5.512 20 N -0.382 5.382 21 C -0.341 4.341 22 H 0.063 0.937 23 C -0.249 4.249 24 N -0.635 5.635 25 Si 0.751 3.249 26 H -0.195 1.195 27 H -0.238 1.238 28 H -0.161 1.161 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.239 0.761 38 H 0.097 0.903 39 H 0.135 0.865 40 H 0.250 0.750 41 H 0.168 0.832 42 H 0.194 0.806 43 H 0.223 0.777 44 H 0.195 0.805 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.167 -1.641 -14.270 18.825 hybrid contribution 0.235 -1.727 2.342 2.920 sum 12.402 -3.369 -11.928 17.534 Atomic orbital electron populations 1.22280 0.97377 1.01417 1.00636 1.20510 0.92713 0.95215 0.85732 0.94683 1.22203 0.92855 1.02492 0.98574 1.21072 0.93174 0.96848 0.84903 0.91721 1.22113 1.00810 1.01949 0.96105 1.45881 1.17940 1.36773 1.33512 1.20141 0.82355 0.84172 0.82456 1.90603 1.66198 1.27682 1.60834 1.21184 0.86758 0.97520 0.97725 1.45467 1.22436 1.29287 1.38841 1.17377 0.82793 0.83762 0.78599 1.90795 1.73941 1.25613 1.54998 1.24467 1.02310 1.05666 1.10323 1.21072 0.92358 1.00508 0.94888 1.20276 1.00137 0.94914 1.03424 1.25848 1.03919 1.04117 1.01008 1.83212 1.14544 1.18323 1.35153 1.42710 1.79967 1.06706 1.08811 1.18835 1.37743 0.90925 0.86589 0.93683 1.25370 1.03120 1.01419 0.94959 1.69877 1.57273 1.36022 1.00372 0.85911 0.79108 0.82314 0.77540 1.19453 1.23821 1.16052 0.95622 0.90809 0.92692 0.89762 0.86723 0.93910 0.90988 0.89411 0.76143 0.90349 0.86509 0.74982 0.83244 0.80603 0.77695 0.80493 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.70 9.52 71.98 0.69 -4.02 16 2 C 0.17 5.45 2.90 44.99 0.13 5.58 16 3 H 0.03 1.32 8.04 -2.39 -0.02 1.31 16 4 C -0.12 -2.77 4.44 30.59 0.14 -2.63 16 5 C 0.14 3.71 2.65 44.99 0.12 3.83 16 6 H 0.06 2.03 7.46 -2.39 -0.02 2.01 16 7 C -0.15 -2.92 9.50 71.98 0.68 -2.24 16 8 N -0.69 -20.98 3.78 -442.53 -1.67 -22.65 16 9 C 0.52 18.58 7.87 87.66 0.69 19.27 16 10 O -0.57 -22.52 15.28 -3.02 -0.05 -22.56 16 11 C 0.10 3.45 6.16 85.63 0.53 3.98 16 12 N -0.71 -25.33 5.52 -470.91 -2.60 -27.93 16 13 C 0.59 21.85 7.78 86.42 0.67 22.52 16 14 O -0.57 -25.03 16.84 -4.37 -0.07 -25.10 16 15 C -0.31 -9.17 6.45 24.08 0.16 -9.02 16 16 C -0.05 -1.36 10.01 21.72 0.22 -1.14 16 17 C -0.16 -2.83 10.15 21.08 0.21 -2.62 16 18 C -0.21 -3.42 10.92 66.81 0.73 -2.69 16 19 S 0.22 4.86 22.16 -56.49 -1.25 3.61 16 20 N -0.74 -30.43 3.40 -322.93 -1.10 -31.53 16 21 C -0.21 -11.38 10.42 84.03 0.88 -10.51 16 22 H 0.05 2.81 8.05 -2.91 -0.02 2.78 16 23 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 24 N -0.98 -63.83 13.97 21.65 0.30 -63.52 16 25 Si 0.92 43.84 27.46 68.60 1.88 45.72 16 26 H -0.27 -12.36 6.42 99.48 0.64 -11.72 16 27 H -0.31 -15.80 7.11 99.48 0.71 -15.10 16 28 H -0.24 -9.63 6.69 99.48 0.67 -8.96 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.40 11.63 6.67 -92.71 -0.62 11.02 16 38 H 0.08 3.37 7.26 -2.39 -0.02 3.36 16 39 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 40 H 0.41 13.92 6.56 -92.71 -0.61 13.31 16 41 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 42 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.21 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.36 13.83 4.14 -92.71 -0.38 13.45 16 45 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -78.91 386.82 1.05 -77.86 By element: Atomic # 1 Polarization: 49.34 SS G_CDS: -0.69 Total: 48.65 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 6.30 Total: 17.46 kcal Atomic # 7 Polarization: -140.56 SS G_CDS: -5.07 Total: -145.63 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.12 Total: -47.67 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.25 Total: 3.61 kcal Total: -78.91 1.05 -77.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.164 kcal (2) G-P(sol) polarization free energy of solvation -78.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds