Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 H 1.08998 * 109.47461 * 305.00352 * 5 4 2 7 7 C 1.53000 * 109.46994 * 184.99940 * 5 4 2 8 8 N 1.46501 * 109.46925 * 65.00479 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99701 * 8 5 4 10 10 O 1.21273 * 120.00156 * 0.02562 * 9 8 5 11 11 C 1.50708 * 119.99804 * 179.97438 * 9 8 5 12 12 N 1.46500 * 109.46965 * 179.97438 * 11 9 8 13 13 C 1.34773 * 120.00042 * 180.02562 * 12 11 9 14 14 O 1.21703 * 119.99855 * 359.97438 * 13 12 11 15 15 C 1.46578 * 120.00142 * 180.02562 * 13 12 11 16 16 C 1.36654 * 125.46220 * 179.97438 * 15 13 12 17 17 C 1.37465 * 113.30093 * 179.97438 * 16 15 13 18 18 C 1.33817 * 115.10192 * 0.02562 * 17 16 15 19 19 S 1.70623 * 110.95468 * 359.72138 * 18 17 16 20 20 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 2 1 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 2 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 2 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.09005 * 109.47051 * 60.00231 * 7 5 4 35 35 H 1.08994 * 109.47045 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.47353 * 300.00478 * 7 5 4 37 37 H 0.97000 * 119.99999 * 24.99425 * 8 5 4 38 38 H 1.09005 * 109.46884 * 299.99685 * 11 9 8 39 39 H 1.09000 * 109.47074 * 60.00149 * 11 9 8 40 40 H 0.97002 * 120.00259 * 0.02562 * 12 11 9 41 41 H 1.08000 * 123.34284 * 359.97438 * 16 15 13 42 42 H 1.08001 * 122.45462 * 180.02562 * 17 16 15 43 43 H 1.08006 * 124.52822 * 179.97438 * 18 17 16 44 44 H 0.97001 * 120.00384 * 265.00562 * 20 2 1 45 45 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9355 0.4341 0.5731 11 6 5.5551 2.6566 1.2701 12 7 6.9102 2.8624 0.7529 13 6 7.4756 4.0843 0.8118 14 8 6.8602 5.0169 1.2943 15 6 8.8312 4.2904 0.2938 16 6 9.5091 5.4770 0.2965 17 6 10.7665 5.3861 -0.2515 18 6 11.1085 4.1685 -0.6889 19 16 9.8486 3.0488 -0.4239 20 7 2.0184 -0.6906 -1.1962 21 6 2.1437 -0.0088 -2.3771 22 1 1.8868 1.0391 -2.4256 23 6 2.6010 -0.6645 -3.5120 24 7 2.7220 -0.0091 -4.6468 25 14 3.0446 -2.4771 -3.4283 26 1 1.8455 -3.2952 -3.7415 27 1 4.1155 -2.7706 -4.4143 28 1 3.5256 -2.8065 -2.0625 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.8001 -2.4820 2.3594 35 1 5.1714 -1.3611 2.5385 36 1 3.6547 -1.0595 3.4193 37 1 3.3285 1.4128 1.9028 38 1 4.8579 3.2952 0.7277 39 1 5.5291 2.9083 2.3303 40 1 7.4006 2.1192 0.3680 41 1 9.0978 6.3948 0.6900 42 1 11.4300 6.2352 -0.3237 43 1 12.0571 3.9259 -1.1448 44 1 2.2490 -1.6318 -1.1527 45 1 3.0419 -0.4672 -5.4398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136078423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = -31.333129 kcal Electronic energy + Delta-G solvation = -26898.402480 eV Core-core repulsion = 23042.886859 eV Total energy + Delta-G solvation = -3855.515621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27518 -39.38308 -37.69276 -37.07155 -34.81771 -34.38995 -32.24681 -31.21243 -30.28187 -29.26106 -27.72094 -26.45087 -24.90563 -23.33860 -21.96412 -21.15654 -20.54190 -19.87911 -19.64865 -18.97916 -17.66057 -16.79249 -16.61925 -16.01064 -15.84402 -15.70804 -15.08723 -14.87560 -14.57876 -14.17599 -13.89629 -13.65213 -13.46383 -13.16381 -13.05624 -13.00214 -12.68219 -12.56745 -12.53000 -12.37215 -12.14125 -12.00927 -11.75667 -11.28015 -11.17567 -10.95029 -10.69567 -10.53934 -10.30558 -10.29608 -9.98483 -9.83132 -9.56314 -9.41333 -9.08411 -8.91932 -8.90563 -8.83596 -7.24771 -5.74067 -3.09289 0.27618 1.24008 1.65477 2.16100 2.65789 2.73566 3.04651 3.39984 3.42081 3.42756 3.47962 4.56333 4.62019 4.68970 4.77153 4.95924 5.04542 5.16636 5.20912 5.21967 5.26189 5.32740 5.47593 5.55897 5.68694 5.72021 5.76027 5.82844 5.91210 5.96553 6.05243 6.07855 6.15295 6.19524 6.28911 6.40038 6.47315 6.63347 6.78334 6.96647 7.27833 7.54953 7.96536 8.00914 8.26828 8.44539 9.23046 9.95898 10.14810 11.44419 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.002975 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.636598 B = 9408.544741 C =10572.125399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.143 3.857 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.710 5.710 9 C 0.512 3.488 10 O -0.533 6.533 11 C 0.101 3.899 12 N -0.712 5.712 13 C 0.595 3.405 14 O -0.532 6.532 15 C -0.268 4.268 16 C -0.055 4.055 17 C -0.152 4.152 18 C -0.232 4.232 19 S 0.217 5.783 20 N -0.745 5.745 21 C -0.239 4.239 22 H 0.088 0.912 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.399 0.601 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.411 0.589 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.169 0.831 44 H 0.359 0.641 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 5.776 16.096 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.174 4.174 5 C 0.039 3.961 6 H 0.120 0.880 7 C -0.220 4.220 8 N -0.361 5.361 9 C 0.297 3.703 10 O -0.410 6.410 11 C -0.026 4.026 12 N -0.366 5.366 13 C 0.381 3.619 14 O -0.411 6.411 15 C -0.388 4.388 16 C -0.089 4.089 17 C -0.184 4.184 18 C -0.370 4.370 19 S 0.484 5.516 20 N -0.389 5.389 21 C -0.369 4.369 22 H 0.106 0.894 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.713 3.287 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.233 0.767 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.249 0.751 41 H 0.172 0.828 42 H 0.163 0.837 43 H 0.187 0.813 44 H 0.192 0.808 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.766 4.450 15.581 20.025 hybrid contribution 0.476 0.182 0.016 0.510 sum 12.242 4.632 15.598 20.362 Atomic orbital electron populations 1.22423 0.98938 1.00848 1.00392 1.20204 0.91821 0.95821 0.85494 0.92755 1.22225 0.93624 1.02254 0.99249 1.21054 0.95223 0.80065 0.99781 0.88047 1.22191 1.01616 1.00106 0.98102 1.45827 1.16120 1.11845 1.62285 1.20301 0.82501 0.89522 0.78008 1.90708 1.51147 1.56143 1.42973 1.21105 0.85116 0.94731 1.01659 1.45531 1.16565 1.11450 1.63099 1.16859 0.84151 0.82472 0.78422 1.90829 1.63202 1.41259 1.45811 1.24580 1.00090 0.99311 1.14856 1.20793 0.93136 0.97775 0.97202 1.20041 0.97239 0.98198 1.02885 1.25406 1.05283 0.98462 1.07890 1.83397 1.04399 1.10365 1.53407 1.42778 1.79615 1.09401 1.07073 1.19004 1.37029 0.95441 0.85435 0.89447 1.24640 1.01405 0.97373 0.95569 1.69696 1.52851 1.35529 1.00132 0.86575 0.77979 0.87003 0.77106 1.21295 1.21840 1.20281 0.94326 0.92381 0.93637 0.91406 0.90643 0.91753 0.92412 0.92802 0.76657 0.87753 0.88258 0.75106 0.82830 0.83696 0.81325 0.80777 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.49 37.16 0.35 -2.34 16 2 C 0.18 3.06 2.84 -67.93 -0.19 2.87 16 3 H 0.05 0.98 7.56 -51.93 -0.39 0.59 16 4 C -0.13 -1.80 4.29 -26.73 -0.11 -1.91 16 5 C 0.14 2.03 2.52 -67.93 -0.17 1.86 16 6 H 0.10 1.91 7.05 -51.93 -0.37 1.54 16 7 C -0.16 -1.92 9.48 37.16 0.35 -1.56 16 8 N -0.71 -9.01 4.45 -53.80 -0.24 -9.25 16 9 C 0.51 7.46 7.86 -10.98 -0.09 7.38 16 10 O -0.53 -9.77 15.33 5.56 0.09 -9.69 16 11 C 0.10 1.25 6.15 -5.19 -0.03 1.22 16 12 N -0.71 -9.61 5.52 -62.83 -0.35 -9.96 16 13 C 0.59 8.38 7.78 -12.90 -0.10 8.28 16 14 O -0.53 -8.72 16.84 5.19 0.09 -8.63 16 15 C -0.27 -3.23 6.45 -36.79 -0.24 -3.47 16 16 C -0.06 -0.58 10.01 -40.44 -0.40 -0.99 16 17 C -0.15 -1.29 10.15 -41.42 -0.42 -1.71 16 18 C -0.23 -1.91 10.92 29.18 0.32 -1.59 16 19 S 0.22 2.16 22.16 -107.50 -2.38 -0.23 16 20 N -0.75 -16.80 4.30 -53.43 -0.23 -17.03 16 21 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 22 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 25 Si 0.88 22.38 27.74 -169.99 -4.71 17.67 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 28 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.40 3.84 8.60 -40.82 -0.35 3.49 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.41 5.60 6.55 -40.82 -0.27 5.33 16 41 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 42 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.36 8.10 5.66 -40.82 -0.23 7.87 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 392.28 15.07 5.91 5.91 Total: -1.00 -35.49 392.28 -8.74 -44.23 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -6.70 Total: 14.42 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.99 Total: 1.33 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.04 Total: -65.01 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.17 Total: -18.32 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.67 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.38 Total: -0.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.49 -8.74 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.899 kcal (2) G-P(sol) polarization free energy of solvation -35.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds