Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 H 1.08998 * 109.47461 * 305.00352 * 5 4 2 7 7 C 1.53000 * 109.46994 * 184.99940 * 5 4 2 8 8 N 1.46501 * 109.46925 * 65.00479 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99701 * 8 5 4 10 10 O 1.21273 * 120.00156 * 0.02562 * 9 8 5 11 11 C 1.50708 * 119.99804 * 179.97438 * 9 8 5 12 12 N 1.46500 * 109.46965 * 179.97438 * 11 9 8 13 13 C 1.34773 * 120.00042 * 180.02562 * 12 11 9 14 14 O 1.21703 * 119.99855 * 359.97438 * 13 12 11 15 15 C 1.46578 * 120.00142 * 180.02562 * 13 12 11 16 16 C 1.36654 * 125.46220 * 179.97438 * 15 13 12 17 17 C 1.37465 * 113.30093 * 179.97438 * 16 15 13 18 18 C 1.33817 * 115.10192 * 0.02562 * 17 16 15 19 19 S 1.70623 * 110.95468 * 359.72138 * 18 17 16 20 20 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 2 1 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 2 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 2 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.09005 * 109.47051 * 60.00231 * 7 5 4 35 35 H 1.08994 * 109.47045 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.47353 * 300.00478 * 7 5 4 37 37 H 0.97000 * 119.99999 * 24.99425 * 8 5 4 38 38 H 1.09005 * 109.46884 * 299.99685 * 11 9 8 39 39 H 1.09000 * 109.47074 * 60.00149 * 11 9 8 40 40 H 0.97002 * 120.00259 * 0.02562 * 12 11 9 41 41 H 1.08000 * 123.34284 * 359.97438 * 16 15 13 42 42 H 1.08001 * 122.45462 * 180.02562 * 17 16 15 43 43 H 1.08006 * 124.52822 * 179.97438 * 18 17 16 44 44 H 0.97001 * 120.00384 * 265.00562 * 20 2 1 45 45 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9355 0.4341 0.5731 11 6 5.5551 2.6566 1.2701 12 7 6.9102 2.8624 0.7529 13 6 7.4756 4.0843 0.8118 14 8 6.8602 5.0169 1.2943 15 6 8.8312 4.2904 0.2938 16 6 9.5091 5.4770 0.2965 17 6 10.7665 5.3861 -0.2515 18 6 11.1085 4.1685 -0.6889 19 16 9.8486 3.0488 -0.4239 20 7 2.0184 -0.6906 -1.1962 21 6 2.1437 -0.0088 -2.3771 22 1 1.8868 1.0391 -2.4256 23 6 2.6010 -0.6645 -3.5120 24 7 2.7220 -0.0091 -4.6468 25 14 3.0446 -2.4771 -3.4283 26 1 1.8455 -3.2952 -3.7415 27 1 4.1155 -2.7706 -4.4143 28 1 3.5256 -2.8065 -2.0625 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.8001 -2.4820 2.3594 35 1 5.1714 -1.3611 2.5385 36 1 3.6547 -1.0595 3.4193 37 1 3.3285 1.4128 1.9028 38 1 4.8579 3.2952 0.7277 39 1 5.5291 2.9083 2.3303 40 1 7.4006 2.1192 0.3680 41 1 9.0978 6.3948 0.6900 42 1 11.4300 6.2352 -0.3237 43 1 12.0571 3.9259 -1.1448 44 1 2.2490 -1.6318 -1.1527 45 1 3.0419 -0.4672 -5.4398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136078423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -57.893722 kcal Electronic energy + Delta-G solvation = -26899.554234 eV Core-core repulsion = 23042.886859 eV Total energy + Delta-G solvation = -3856.667375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39330 -40.48394 -38.60270 -38.32204 -36.24906 -35.57754 -34.10848 -32.50786 -31.25352 -30.90317 -28.68619 -27.59148 -25.73604 -25.32581 -23.00162 -22.23335 -21.76871 -21.29448 -20.54524 -19.88163 -19.65108 -17.85592 -17.72927 -17.05768 -16.95730 -16.70603 -16.58466 -15.99933 -15.98671 -15.59732 -15.23027 -14.86926 -14.65463 -14.43311 -14.25632 -14.06742 -13.98863 -13.70951 -13.58833 -13.42266 -13.26123 -13.19181 -13.00514 -12.80486 -12.62720 -12.38238 -11.98721 -11.93471 -11.86181 -11.67863 -11.44151 -11.39779 -11.05602 -10.95147 -10.48433 -10.05342 -9.88381 -9.59713 -9.26175 -8.00426 -5.30738 -0.53494 0.45294 0.92133 1.34712 1.36571 1.39001 1.45025 1.51311 1.70094 2.07553 2.37580 2.48882 3.32692 3.55382 3.66606 3.74068 3.87226 4.09080 4.11756 4.24594 4.29426 4.33421 4.36485 4.52755 4.53260 4.67067 4.78403 4.83919 4.91040 4.98289 5.00342 5.05360 5.09316 5.18346 5.21981 5.34430 5.34992 5.38530 5.57484 5.61320 5.81096 6.21054 6.24272 6.49216 6.89650 7.12299 7.19216 7.91072 8.06739 9.21785 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.002975 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.636598 B = 9408.544741 C =10572.125399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.165 3.835 3 H 0.044 0.956 4 C -0.121 4.121 5 C 0.141 3.859 6 H 0.052 0.948 7 C -0.152 4.152 8 N -0.698 5.698 9 C 0.508 3.492 10 O -0.576 6.576 11 C 0.104 3.896 12 N -0.715 5.715 13 C 0.593 3.407 14 O -0.564 6.564 15 C -0.305 4.305 16 C -0.051 4.051 17 C -0.157 4.157 18 C -0.215 4.215 19 S 0.206 5.794 20 N -0.748 5.748 21 C -0.214 4.214 22 H 0.053 0.947 23 C -0.068 4.068 24 N -0.988 5.988 25 Si 0.949 3.051 26 H -0.277 1.277 27 H -0.303 1.303 28 H -0.254 1.254 29 H 0.078 0.922 30 H 0.024 0.976 31 H 0.051 0.949 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.417 0.583 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.409 0.591 41 H 0.156 0.844 42 H 0.175 0.825 43 H 0.200 0.800 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.150 5.067 18.754 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.062 0.938 4 C -0.159 4.159 5 C 0.037 3.963 6 H 0.070 0.930 7 C -0.210 4.210 8 N -0.350 5.350 9 C 0.294 3.706 10 O -0.456 6.456 11 C -0.023 4.023 12 N -0.368 5.368 13 C 0.381 3.619 14 O -0.446 6.446 15 C -0.425 4.425 16 C -0.086 4.086 17 C -0.187 4.187 18 C -0.353 4.353 19 S 0.474 5.526 20 N -0.392 5.392 21 C -0.345 4.345 22 H 0.071 0.929 23 C -0.259 4.259 24 N -0.639 5.639 25 Si 0.778 3.222 26 H -0.204 1.204 27 H -0.231 1.231 28 H -0.179 1.179 29 H 0.097 0.903 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.254 0.746 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.247 0.753 41 H 0.174 0.826 42 H 0.193 0.807 43 H 0.217 0.783 44 H 0.195 0.805 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.040 3.736 18.329 22.245 hybrid contribution 0.372 0.526 -0.767 1.002 sum 12.411 4.262 17.562 21.923 Atomic orbital electron populations 1.22294 0.97385 1.01351 1.00758 1.20530 0.92781 0.95509 0.85395 0.93763 1.22147 0.92655 1.02757 0.98373 1.20970 0.95758 0.80766 0.98812 0.92957 1.22093 1.00573 1.00300 0.98043 1.45749 1.15784 1.11960 1.61493 1.20662 0.82612 0.90000 0.77332 1.90686 1.52530 1.57372 1.44998 1.21185 0.84724 0.93154 1.03216 1.45616 1.16896 1.11368 1.62961 1.17161 0.84845 0.82033 0.77859 1.90791 1.64276 1.41971 1.47536 1.24524 0.99911 1.00769 1.17334 1.21071 0.93835 0.97335 0.96314 1.20312 0.96724 0.99331 1.02373 1.25816 1.05500 0.97621 1.06352 1.83445 1.05032 1.10662 1.53507 1.42823 1.79801 1.09500 1.07059 1.18959 1.34158 0.94129 0.87249 0.92914 1.25424 1.02913 1.02146 0.95373 1.69882 1.55489 1.37526 1.01027 0.85484 0.77487 0.81478 0.77784 1.20368 1.23061 1.17865 0.90293 0.95706 0.93037 0.86991 0.89553 0.90836 0.94101 0.89914 0.74607 0.87803 0.85584 0.75293 0.82622 0.80736 0.78266 0.80519 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.73 9.49 71.98 0.68 -4.05 16 2 C 0.17 5.45 2.84 44.99 0.13 5.57 16 3 H 0.04 1.55 7.56 -2.39 -0.02 1.53 16 4 C -0.12 -2.78 4.29 30.60 0.13 -2.65 16 5 C 0.14 3.74 2.52 44.99 0.11 3.86 16 6 H 0.05 1.95 7.05 -2.39 -0.02 1.93 16 7 C -0.15 -3.17 9.48 71.98 0.68 -2.48 16 8 N -0.70 -16.72 4.45 -442.53 -1.97 -18.69 16 9 C 0.51 14.84 7.86 87.66 0.69 15.53 16 10 O -0.58 -21.74 15.33 -3.01 -0.05 -21.79 16 11 C 0.10 2.58 6.15 85.64 0.53 3.11 16 12 N -0.71 -19.94 5.52 -470.90 -2.60 -22.54 16 13 C 0.59 17.24 7.78 86.42 0.67 17.91 16 14 O -0.56 -18.97 16.84 -4.36 -0.07 -19.04 16 15 C -0.31 -7.46 6.45 24.08 0.16 -7.31 16 16 C -0.05 -1.04 10.01 21.72 0.22 -0.82 16 17 C -0.16 -2.34 10.15 21.08 0.21 -2.13 16 18 C -0.22 -3.08 10.92 66.81 0.73 -2.35 16 19 S 0.21 4.05 22.16 -56.49 -1.25 2.80 16 20 N -0.75 -33.36 4.30 -322.94 -1.39 -34.75 16 21 C -0.21 -12.12 10.41 84.03 0.87 -11.25 16 22 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 23 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 24 N -0.99 -65.00 13.97 21.65 0.30 -64.70 16 25 Si 0.95 47.04 27.74 68.60 1.90 48.95 16 26 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 27 H -0.30 -15.51 7.11 99.48 0.71 -14.81 16 28 H -0.25 -11.45 6.52 99.48 0.65 -10.80 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.40 8.14 -2.38 -0.02 1.39 16 35 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.42 6.96 8.60 -92.71 -0.80 6.16 16 38 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 39 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.41 11.72 6.55 -92.71 -0.61 11.11 16 41 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 42 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.20 1.57 8.06 -2.91 -0.02 1.54 16 44 H 0.36 15.81 5.66 -92.71 -0.52 15.29 16 45 H 0.25 16.05 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -82.01 392.28 0.20 -81.81 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.96 Total: 38.61 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.28 Total: 9.34 kcal Atomic # 7 Polarization: -135.03 SS G_CDS: -5.65 Total: -140.68 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.12 Total: -40.83 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.90 Total: 48.95 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.25 Total: 2.80 kcal Total: -82.01 0.20 -81.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.920 kcal (2) G-P(sol) polarization free energy of solvation -82.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds