Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.46967 * 2 1 4 4 C 1.52998 * 109.47561 * 240.00191 * 2 1 3 5 5 C 1.52996 * 109.47548 * 175.00124 * 4 2 1 6 6 H 1.09002 * 109.46687 * 304.99662 * 5 4 2 7 7 C 1.52998 * 109.47376 * 184.99890 * 5 4 2 8 8 N 1.46497 * 109.47556 * 64.99421 * 5 4 2 9 9 C 1.36936 * 120.00507 * 205.00661 * 8 5 4 10 10 H 1.08006 * 119.99598 * 359.97438 * 9 8 5 11 11 C 1.38807 * 120.00102 * 180.02562 * 9 8 5 12 12 N 1.31619 * 120.00312 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00019 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47085 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47295 * 119.99615 * 13 11 9 16 16 H 1.48495 * 109.47442 * 239.99845 * 13 11 9 17 17 N 1.46494 * 109.47112 * 119.99559 * 2 1 3 18 18 C 1.34778 * 120.00352 * 275.00168 * 17 2 1 19 19 O 1.21279 * 119.99770 * 0.02562 * 18 17 2 20 20 C 1.50696 * 120.00296 * 179.97438 * 18 17 2 21 21 N 1.46494 * 109.47476 * 179.97438 * 20 18 17 22 22 C 1.34777 * 120.00241 * 179.97438 * 21 20 18 23 23 O 1.21702 * 120.00111 * 0.02562 * 22 21 20 24 24 C 1.46584 * 119.99934 * 180.02562 * 22 21 20 25 25 C 1.36652 * 125.45815 * 180.02562 * 24 22 21 26 26 C 1.37475 * 113.29531 * 179.97438 * 25 24 22 27 27 C 1.33814 * 115.10326 * 0.02562 * 26 25 24 28 28 S 1.70613 * 110.95401 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47516 * 60.00349 * 1 2 3 30 30 H 1.09009 * 109.46967 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47656 * 299.99955 * 1 2 3 32 32 H 1.09006 * 109.46974 * 295.00017 * 4 2 1 33 33 H 1.08997 * 109.47017 * 54.99251 * 4 2 1 34 34 H 1.08998 * 109.47063 * 59.99742 * 7 5 4 35 35 H 1.08997 * 109.47341 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47027 * 299.99564 * 7 5 4 37 37 H 0.97006 * 119.99841 * 25.00157 * 8 5 4 38 38 H 0.97003 * 120.00371 * 180.02562 * 12 11 9 39 39 H 0.97003 * 120.00234 * 95.00820 * 17 2 1 40 40 H 1.09006 * 109.47029 * 60.00129 * 20 18 17 41 41 H 1.08995 * 109.47722 * 300.00642 * 20 18 17 42 42 H 0.97008 * 119.99920 * 0.02562 * 21 20 18 43 43 H 1.07998 * 123.35183 * 0.25097 * 25 24 22 44 44 H 1.07999 * 122.44590 * 180.02562 * 26 25 24 45 45 H 1.07998 * 124.52149 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 1 3.8570 0.4359 -1.2677 7 6 4.0646 -1.2249 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3943 -0.9854 0.2808 10 1 5.9389 -0.1791 -0.1883 11 6 5.9525 -1.6687 1.3523 12 7 5.2891 -2.6515 1.9236 13 14 7.6451 -1.1935 1.9836 14 1 8.1764 -0.0664 1.1756 15 1 7.5446 -0.7791 3.4062 16 1 8.5604 -2.3574 1.8706 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0181 2.3571 19 8 1.8581 1.1585 2.4117 20 6 2.6488 -0.7286 3.5878 21 7 2.6987 0.2129 4.7090 22 6 3.1194 -0.2030 5.9200 23 8 3.4581 -1.3606 6.0820 24 6 3.1688 0.7390 7.0420 25 6 3.5755 0.4390 8.3117 26 6 3.5225 1.5134 9.1677 27 6 3.0873 2.6543 8.6205 28 16 2.7147 2.4361 6.9699 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.6265 -0.6886 -3.4657 35 1 5.1508 -1.1476 -2.6700 36 1 3.7724 -2.2741 -2.6698 37 1 3.6648 -2.0583 0.2387 38 1 5.6790 -3.1289 2.6727 39 1 2.2491 -1.6316 1.1527 40 1 3.6479 -1.1211 3.3987 41 1 1.9760 -1.5504 3.8326 42 1 2.4283 1.1356 4.5800 43 1 3.9097 -0.5432 8.6115 44 1 3.8109 1.4417 10.2060 45 1 2.9856 3.5886 9.1526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136078424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -28.545592 kcal Electronic energy + Delta-G solvation = -27736.350836 eV Core-core repulsion = 23880.956092 eV Total energy + Delta-G solvation = -3855.394744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.87762 -39.06041 -37.49507 -36.85399 -34.42691 -33.92727 -32.33970 -30.89412 -30.06637 -28.60615 -27.29072 -26.34665 -24.67402 -23.66667 -21.74267 -20.83548 -20.30617 -19.80827 -19.29822 -18.66790 -17.19869 -16.47352 -16.25542 -15.74234 -15.45874 -15.36047 -14.93089 -14.61992 -14.35814 -13.84875 -13.72765 -13.49241 -13.24963 -12.91229 -12.84290 -12.75963 -12.65627 -12.36774 -12.23268 -12.02520 -11.85118 -11.75167 -11.68311 -11.04122 -11.02497 -10.85102 -10.74772 -10.41027 -10.23084 -9.91896 -9.91158 -9.69678 -9.41127 -9.07007 -8.98478 -8.78048 -8.67994 -8.46146 -6.96659 -5.81418 -3.08107 0.46251 1.39606 1.80384 2.35374 3.07855 3.19023 3.36833 3.43765 3.50070 3.53495 3.90232 4.58691 4.81596 4.94959 5.02896 5.20887 5.23189 5.37761 5.39059 5.48841 5.53526 5.64032 5.76782 5.85144 5.85727 5.92339 5.97811 6.07675 6.10848 6.21596 6.22444 6.30147 6.31932 6.37883 6.50878 6.54349 6.57816 6.83309 7.01477 7.08683 7.67099 7.70237 8.03542 8.36151 8.38203 8.71727 9.49802 10.02574 10.38061 11.40849 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.003759 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.555855 B = 7447.873665 C = 9125.115146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.169 3.831 6 H 0.048 0.952 7 C -0.164 4.164 8 N -0.717 5.717 9 C -0.232 4.232 10 H 0.068 0.932 11 C -0.008 4.008 12 N -0.931 5.931 13 Si 0.896 3.104 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.292 1.292 17 N -0.689 5.689 18 C 0.526 3.474 19 O -0.566 6.566 20 C 0.095 3.905 21 N -0.709 5.709 22 C 0.586 3.414 23 O -0.523 6.523 24 C -0.256 4.256 25 C -0.062 4.062 26 C -0.149 4.149 27 C -0.238 4.238 28 S 0.207 5.793 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.377 0.623 38 H 0.257 0.743 39 H 0.408 0.592 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.405 0.595 43 H 0.154 0.846 44 H 0.144 0.856 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 7.873 5.971 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.102 0.898 4 C -0.173 4.173 5 C 0.059 3.941 6 H 0.066 0.934 7 C -0.224 4.224 8 N -0.360 5.360 9 C -0.363 4.363 10 H 0.086 0.914 11 C -0.204 4.204 12 N -0.580 5.580 13 Si 0.728 3.272 14 H -0.209 1.209 15 H -0.218 1.218 16 H -0.220 1.220 17 N -0.341 5.341 18 C 0.312 3.688 19 O -0.446 6.446 20 C -0.031 4.031 21 N -0.363 5.363 22 C 0.371 3.629 23 O -0.401 6.401 24 C -0.376 4.376 25 C -0.095 4.095 26 C -0.181 4.181 27 C -0.376 4.376 28 S 0.474 5.526 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.212 0.788 38 H 0.067 0.933 39 H 0.246 0.754 40 H 0.149 0.851 41 H 0.110 0.890 42 H 0.242 0.758 43 H 0.172 0.828 44 H 0.162 0.838 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.474 8.906 4.959 14.615 hybrid contribution 1.556 -0.943 1.617 2.434 sum -8.917 7.964 6.576 13.645 Atomic orbital electron populations 1.22208 0.96188 1.01714 1.01962 1.20831 0.92498 0.97728 0.84395 0.89812 1.22215 0.97855 1.00681 0.96507 1.20281 0.89645 0.95890 0.88244 0.93442 1.22423 1.01554 1.00366 0.98051 1.42463 1.18743 1.40017 1.34822 1.19216 0.93321 1.13187 1.10558 0.91448 1.24583 0.98308 0.98567 0.98956 1.69548 1.38001 1.24439 1.26008 0.86278 0.84782 0.77463 0.78668 1.20850 1.21840 1.21964 1.45850 1.65215 1.14617 1.08421 1.20202 0.76542 0.86938 0.85079 1.90594 1.52406 1.16131 1.85498 1.21270 1.06261 0.91602 0.83948 1.45518 1.67226 1.14711 1.08869 1.16866 0.77739 0.86850 0.81399 1.90867 1.48113 1.17693 1.83418 1.24713 1.15477 0.98313 0.99133 1.20811 0.97262 1.00797 0.90640 1.20031 1.04460 0.91821 1.01764 1.25334 1.08283 1.03647 1.00360 1.83235 1.60202 1.03345 1.05793 0.92071 0.92731 0.92429 0.91641 0.90759 0.94618 0.92870 0.93585 0.78759 0.93323 0.75364 0.85104 0.88992 0.75802 0.82822 0.83835 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 37.16 0.35 -1.68 16 2 C 0.15 2.27 2.57 -67.94 -0.17 2.09 16 3 H 0.08 1.44 7.58 -51.92 -0.39 1.04 16 4 C -0.13 -1.90 4.43 -26.73 -0.12 -2.02 16 5 C 0.17 3.03 2.89 -67.94 -0.20 2.83 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 C -0.16 -2.74 9.49 37.16 0.35 -2.38 16 8 N -0.72 -15.67 3.84 -53.43 -0.21 -15.88 16 9 C -0.23 -5.93 9.93 -15.06 -0.15 -6.08 16 10 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.93 -25.27 12.78 55.49 0.71 -24.57 16 13 Si 0.90 22.24 29.55 -169.99 -5.02 17.21 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 N -0.69 -11.67 3.80 -53.81 -0.20 -11.87 16 18 C 0.53 9.79 7.86 -10.99 -0.09 9.71 16 19 O -0.57 -11.33 15.33 5.56 0.09 -11.24 16 20 C 0.10 1.79 6.15 -5.20 -0.03 1.76 16 21 N -0.71 -12.52 5.52 -62.84 -0.35 -12.86 16 22 C 0.59 10.67 7.78 -12.89 -0.10 10.57 16 23 O -0.52 -11.24 16.84 5.19 0.09 -11.15 16 24 C -0.26 -3.78 6.45 -36.79 -0.24 -4.02 16 25 C -0.06 -0.81 10.01 -40.43 -0.40 -1.21 16 26 C -0.15 -1.54 10.15 -41.41 -0.42 -1.96 16 27 C -0.24 -2.30 10.92 29.18 0.32 -1.98 16 28 S 0.21 2.38 22.16 -107.50 -2.38 0.00 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.38 8.44 5.70 -40.82 -0.23 8.21 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.41 7.07 6.51 -40.82 -0.27 6.81 16 40 H 0.13 2.94 7.87 -51.93 -0.41 2.53 16 41 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.40 6.68 6.55 -40.82 -0.27 6.42 16 43 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 44 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 390.66 15.07 5.89 5.89 Total: -1.00 -30.34 390.66 -8.99 -39.33 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -6.61 Total: 19.84 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.99 Total: 5.30 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -0.05 Total: -65.18 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.40 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.38 Total: 0.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.34 -8.99 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.787 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds