Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 175.00153 * 4 2 1 6 6 H 1.09001 * 109.46926 * 54.99752 * 5 4 2 7 7 C 1.53004 * 109.47110 * 174.99777 * 5 4 2 8 8 N 1.46504 * 109.46864 * 294.99860 * 5 4 2 9 9 C 1.34774 * 119.99920 * 155.00185 * 8 5 4 10 10 O 1.21281 * 119.99898 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00083 * 179.97438 * 9 8 5 12 12 N 1.46500 * 109.47165 * 179.97438 * 11 9 8 13 13 C 1.34776 * 119.99689 * 180.02562 * 12 11 9 14 14 O 1.21634 * 120.00370 * 0.02562 * 13 12 11 15 15 C 1.47191 * 119.99706 * 180.02562 * 13 12 11 16 16 C 1.44427 * 123.45902 * 179.73260 * 15 13 12 17 17 C 1.32774 * 113.08141 * 179.80950 * 16 15 13 18 18 S 1.75501 * 110.57507 * 0.43477 * 17 16 15 19 19 C 1.36009 * 123.46361 * 0.02562 * 15 13 12 20 20 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 2 1 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 30 30 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 31 31 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47383 * 294.99883 * 4 2 1 33 33 H 1.09007 * 109.47501 * 54.99867 * 4 2 1 34 34 H 1.09008 * 109.46288 * 179.97438 * 7 5 4 35 35 H 1.08992 * 109.47192 * 299.99633 * 7 5 4 36 36 H 1.09001 * 109.47246 * 60.00170 * 7 5 4 37 37 H 0.97001 * 119.99979 * 334.99667 * 8 5 4 38 38 H 1.09000 * 109.47236 * 300.00198 * 11 9 8 39 39 H 1.09009 * 109.47077 * 59.99924 * 11 9 8 40 40 H 0.96994 * 120.00303 * 359.97438 * 12 11 9 41 41 H 1.08001 * 123.45757 * 359.97438 * 16 15 13 42 42 H 1.08004 * 124.70869 * 180.17883 * 17 16 15 43 43 H 1.08002 * 124.58918 * 0.02562 * 19 15 13 44 44 H 0.97000 * 120.00040 * 94.99981 * 20 2 1 45 45 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3867 7 6 4.0851 -1.4384 -2.4924 8 7 3.9480 0.7894 -1.4924 9 6 5.1612 1.2135 -1.0867 10 8 5.9356 0.4341 -0.5733 11 6 5.5555 2.6563 -1.2711 12 7 6.9101 2.8624 -0.7527 13 6 7.4754 4.0845 -0.8113 14 8 6.8607 5.0164 -1.2942 15 6 8.8366 4.2915 -0.2909 16 6 9.5153 5.5660 -0.3209 17 6 10.7330 5.5197 0.2064 18 16 11.1062 3.8951 0.7552 19 6 9.5866 3.3009 0.2623 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0074 2.3757 22 1 1.8919 1.0404 2.4243 23 6 2.6123 -0.6617 3.5090 24 7 2.7431 -0.0037 4.6414 25 14 3.0578 -2.4738 3.4249 26 1 1.8628 -3.2929 3.7507 27 1 3.5267 -2.8052 2.0554 28 1 4.1381 -2.7639 4.4016 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 5.1715 -1.3610 -2.5385 35 1 3.8001 -2.4819 -2.3594 36 1 3.6546 -1.0594 -3.4194 37 1 3.3285 1.4129 -1.9028 38 1 5.5298 2.9073 -2.3315 39 1 4.8583 3.2956 -0.7294 40 1 7.3999 2.1196 -0.3666 41 1 9.0763 6.4649 -0.7278 42 1 11.4025 6.3638 0.2828 43 1 9.2633 2.2764 0.3736 44 1 2.2490 -1.6317 1.1527 45 1 3.0706 -0.4598 5.4323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146486997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = -33.388996 kcal Electronic energy + Delta-G solvation = -26927.258790 eV Core-core repulsion = 23071.654020 eV Total energy + Delta-G solvation = -3855.604770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32655 -39.43019 -37.22018 -36.87623 -34.82055 -34.38948 -32.25045 -31.21372 -30.26265 -29.26550 -27.60792 -26.45355 -24.95547 -23.34511 -21.96175 -21.17400 -20.52790 -19.88494 -19.56079 -18.49323 -17.68363 -17.39329 -16.42620 -16.31334 -15.89495 -15.43872 -14.87331 -14.78111 -14.51893 -14.16811 -13.69578 -13.64611 -13.38340 -13.27285 -13.05668 -13.00595 -12.69712 -12.65303 -12.53447 -12.36221 -12.14191 -12.01435 -11.76206 -11.37625 -11.28510 -10.95799 -10.70171 -10.54396 -10.30902 -10.10307 -9.99063 -9.82692 -9.57098 -9.36973 -9.25010 -8.92547 -8.91175 -8.67924 -7.25432 -5.74792 -3.10003 0.52913 1.28250 1.66170 1.79253 2.67146 2.79064 3.23281 3.39159 3.41154 3.45907 3.47117 4.50388 4.61190 4.64835 4.82636 4.95617 4.99729 5.12678 5.18141 5.22806 5.26506 5.35706 5.46870 5.55172 5.55503 5.71432 5.75448 5.81803 5.82668 5.96047 6.00610 6.13976 6.14767 6.20250 6.28671 6.39506 6.46843 6.63102 6.77825 6.96171 7.37201 7.55476 8.00224 8.07159 8.26975 8.43898 9.22329 9.95171 10.14133 11.43706 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011041 B = 0.002850 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.366359 B = 9823.354779 C =11034.116496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.143 3.857 6 H 0.101 0.899 7 C -0.162 4.162 8 N -0.710 5.710 9 C 0.512 3.488 10 O -0.535 6.535 11 C 0.101 3.899 12 N -0.710 5.710 13 C 0.581 3.419 14 O -0.540 6.540 15 C -0.155 4.155 16 C -0.084 4.084 17 C -0.240 4.240 18 S 0.188 5.812 19 C -0.207 4.207 20 N -0.745 5.745 21 C -0.239 4.239 22 H 0.088 0.912 23 C 0.005 3.995 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.286 1.286 27 H -0.277 1.277 28 H -0.292 1.292 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.399 0.601 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.411 0.589 41 H 0.155 0.845 42 H 0.170 0.830 43 H 0.173 0.827 44 H 0.359 0.641 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.184 6.040 -15.970 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.174 4.174 5 C 0.039 3.961 6 H 0.119 0.881 7 C -0.220 4.220 8 N -0.361 5.361 9 C 0.297 3.703 10 O -0.412 6.412 11 C -0.026 4.026 12 N -0.365 5.365 13 C 0.367 3.633 14 O -0.418 6.418 15 C -0.173 4.173 16 C -0.113 4.113 17 C -0.374 4.374 18 S 0.454 5.546 19 C -0.345 4.345 20 N -0.389 5.389 21 C -0.369 4.369 22 H 0.106 0.894 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.714 3.286 26 H -0.213 1.213 27 H -0.203 1.203 28 H -0.219 1.219 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.233 0.767 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.250 0.750 41 H 0.172 0.828 42 H 0.187 0.813 43 H 0.191 0.809 44 H 0.192 0.808 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.563 5.641 -15.069 21.045 hybrid contribution -1.205 -0.833 -0.488 1.544 sum 12.358 4.808 -15.557 20.442 Atomic orbital electron populations 1.22422 0.98920 1.00852 1.00395 1.20204 0.91838 0.95820 0.85483 0.92752 1.22227 0.93629 1.02250 0.99257 1.21050 0.95223 0.80098 0.99749 0.88084 1.22192 1.01592 1.00105 0.98118 1.45832 1.16160 1.11823 1.62278 1.20325 0.82446 0.89570 0.77916 1.90699 1.51199 1.56203 1.43091 1.21079 0.85438 0.94532 1.01574 1.45514 1.16346 1.11743 1.62906 1.17526 0.85102 0.82214 0.78452 1.90788 1.63944 1.41288 1.45809 1.20242 0.95970 0.93948 1.07143 1.21128 0.93286 0.97356 0.99486 1.25528 1.01575 1.01395 1.08945 1.83106 1.12612 1.01237 1.57684 1.25808 1.00310 1.04302 1.04081 1.42776 1.79598 1.09342 1.07151 1.19005 1.36893 0.95426 0.85557 0.89444 1.24646 1.01397 0.97375 0.95600 1.69701 1.52603 1.35495 1.00421 0.86570 0.77987 0.86996 0.77084 1.21279 1.20305 1.21852 0.92389 0.94310 0.93631 0.90651 0.91405 0.92441 0.91760 0.92796 0.76661 0.88406 0.87915 0.75030 0.82777 0.81266 0.80931 0.80776 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.49 37.16 0.35 -2.34 16 2 C 0.18 3.07 2.84 -67.93 -0.19 2.87 16 3 H 0.05 0.98 7.56 -51.93 -0.39 0.59 16 4 C -0.13 -1.80 4.29 -26.74 -0.11 -1.92 16 5 C 0.14 2.03 2.52 -67.93 -0.17 1.86 16 6 H 0.10 1.90 7.05 -51.93 -0.37 1.54 16 7 C -0.16 -1.92 9.48 37.16 0.35 -1.57 16 8 N -0.71 -9.04 4.45 -53.80 -0.24 -9.28 16 9 C 0.51 7.44 7.86 -10.99 -0.09 7.36 16 10 O -0.54 -9.73 15.33 5.56 0.09 -9.64 16 11 C 0.10 1.25 6.15 -5.19 -0.03 1.22 16 12 N -0.71 -9.35 5.50 -62.64 -0.34 -9.70 16 13 C 0.58 8.13 7.79 -12.62 -0.10 8.03 16 14 O -0.54 -8.91 16.80 5.25 0.09 -8.82 16 15 C -0.15 -1.84 5.98 -104.63 -0.63 -2.47 16 16 C -0.08 -0.87 10.10 -39.02 -0.39 -1.26 16 17 C -0.24 -1.96 11.12 28.86 0.32 -1.64 16 18 S 0.19 1.51 23.02 -107.50 -2.47 -0.97 16 19 C -0.21 -2.08 10.38 29.93 0.31 -1.77 16 20 N -0.75 -16.82 4.30 -53.43 -0.23 -17.05 16 21 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 22 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.56 13.97 55.49 0.78 -28.79 16 25 Si 0.88 22.39 27.74 -169.99 -4.72 17.67 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.60 6.51 56.52 0.37 -6.24 16 28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.40 3.87 8.60 -40.82 -0.35 3.52 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 40 H 0.41 5.30 5.93 -40.82 -0.24 5.06 16 41 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.17 1.54 7.01 -52.49 -0.37 1.18 16 44 H 0.36 8.11 5.65 -40.82 -0.23 7.88 16 45 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -35.67 391.47 -8.40 -44.07 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -6.62 Total: 14.93 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.63 Total: 1.67 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -0.04 Total: -64.81 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.72 Total: 17.67 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.67 -8.40 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146486997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.683 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds