Wall clock time and date at job start Sat Apr 11 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47592 * 2 1 4 4 C 1.53006 * 109.47094 * 240.00500 * 2 1 3 5 5 C 1.52995 * 109.47400 * 174.02058 * 4 2 1 6 6 H 1.09001 * 109.47408 * 304.07412 * 5 4 2 7 7 C 1.52995 * 109.47378 * 184.06975 * 5 4 2 8 8 N 1.46506 * 109.46998 * 64.07228 * 5 4 2 9 9 C 1.34782 * 119.99927 * 206.44692 * 8 5 4 10 10 O 1.21278 * 120.00008 * 5.13195 * 9 8 5 11 11 C 1.50693 * 119.99789 * 185.13707 * 9 8 5 12 12 N 1.46504 * 109.47019 * 184.01104 * 11 9 8 13 13 C 1.34774 * 119.99786 * 179.97438 * 12 11 9 14 14 O 1.21634 * 120.00659 * 359.97438 * 13 12 11 15 15 C 1.47193 * 119.99858 * 179.97438 * 13 12 11 16 16 C 1.44422 * 123.46428 * 179.72813 * 15 13 12 17 17 C 1.32766 * 113.08697 * 179.81039 * 16 15 13 18 18 S 1.75509 * 110.57537 * 0.44549 * 17 16 15 19 19 C 1.36010 * 123.45913 * 0.03368 * 15 13 12 20 20 N 1.46503 * 109.47250 * 120.00684 * 2 1 3 21 21 C 1.36940 * 119.99464 * 270.61208 * 20 2 1 22 22 H 1.07998 * 120.00387 * 350.66602 * 21 20 2 23 23 C 1.38811 * 119.99502 * 170.66252 * 21 20 2 24 24 N 1.31619 * 119.99851 * 178.45752 * 23 21 20 25 25 Si 1.86799 * 120.00325 * 358.45180 * 23 21 20 26 26 H 1.48505 * 109.46650 * 90.85519 * 25 23 21 27 27 H 1.48497 * 109.47532 * 210.85387 * 25 23 21 28 28 H 1.48504 * 109.47290 * 330.85777 * 25 23 21 29 29 H 1.08992 * 109.47539 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46758 * 299.99972 * 1 2 3 31 31 H 1.09001 * 109.47433 * 59.99422 * 1 2 3 32 32 H 1.09008 * 109.46526 * 294.02113 * 4 2 1 33 33 H 1.08996 * 109.47174 * 54.01703 * 4 2 1 34 34 H 1.09000 * 109.46760 * 60.00132 * 7 5 4 35 35 H 1.09000 * 109.47549 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47208 * 300.00560 * 7 5 4 37 37 H 0.96997 * 119.99729 * 26.44563 * 8 5 4 38 38 H 1.09003 * 109.46974 * 304.00959 * 11 9 8 39 39 H 1.08995 * 109.47507 * 64.00884 * 11 9 8 40 40 H 0.96993 * 119.99797 * 0.02562 * 12 11 9 41 41 H 1.08001 * 123.45706 * 0.02562 * 16 15 13 42 42 H 1.08003 * 124.71348 * 180.17927 * 17 16 15 43 43 H 1.08004 * 124.59429 * 0.02562 * 19 15 13 44 44 H 0.96994 * 120.00506 * 90.61455 * 20 2 1 45 45 H 0.97000 * 120.00002 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5625 -0.5924 -1.3268 6 1 3.8396 0.4616 -1.3057 7 6 4.0624 -1.2252 -2.6270 8 7 4.1695 -1.2798 -0.1843 9 6 5.3756 -0.8899 0.2737 10 8 5.9165 0.0875 -0.1984 11 6 6.0521 -1.6684 1.3724 12 7 7.2949 -0.9937 1.7552 13 6 8.0719 -1.5127 2.7264 14 8 7.7412 -2.5411 3.2855 15 6 9.3208 -0.8351 3.1106 16 6 10.2055 -1.3214 4.1433 17 6 11.2741 -0.5530 4.3177 18 16 11.2337 0.8176 3.2222 19 6 9.7572 0.3167 2.5336 20 7 2.0183 -0.6908 1.1961 21 6 2.2346 0.0113 2.3518 22 1 2.1918 1.0904 2.3441 23 6 2.5088 -0.6641 3.5331 24 7 2.7466 0.0114 4.6374 25 14 2.5400 -2.5317 3.5556 26 1 3.9188 -3.0070 3.2759 27 1 2.1102 -3.0179 4.8913 28 1 1.6159 -3.0548 2.5175 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7666 -1.7751 -1.1974 33 1 1.5918 -0.2729 -2.1360 34 1 3.6108 -0.7137 -3.4770 35 1 5.1472 -1.1338 -2.6820 36 1 3.7853 -2.2792 -2.6481 37 1 3.7033 -2.0156 0.2426 38 1 5.3900 -1.7279 2.2363 39 1 6.2788 -2.6741 1.0186 40 1 7.5580 -0.1730 1.3102 41 1 10.0189 -2.2199 4.7128 42 1 12.0572 -0.7426 5.0370 43 1 9.2380 0.8431 1.7463 44 1 2.1885 -1.6453 1.1695 45 1 2.9378 -0.4605 5.4629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146486998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:31 Heat of formation + Delta-G solvation = -25.577434 kcal Electronic energy + Delta-G solvation = -27792.629215 eV Core-core repulsion = 23937.363180 eV Total energy + Delta-G solvation = -3855.266035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09519 -39.25224 -37.16667 -36.71993 -34.58448 -34.10390 -32.37472 -31.14763 -30.15968 -29.18132 -27.37633 -26.43493 -24.76906 -23.36955 -21.83466 -20.98128 -20.57068 -19.88724 -19.28216 -18.30734 -17.59566 -17.23414 -16.34237 -16.07810 -15.65749 -15.26015 -14.79492 -14.60454 -14.36594 -14.27183 -13.54330 -13.37494 -13.30075 -13.11840 -12.90025 -12.83983 -12.72614 -12.51680 -12.51118 -12.20687 -12.10716 -12.01672 -11.81255 -11.25219 -11.12989 -10.92341 -10.81071 -10.52073 -10.38319 -10.04931 -9.85444 -9.63891 -9.57890 -9.19231 -9.01446 -8.98827 -8.63536 -8.51898 -7.27628 -5.79608 -3.15909 0.67903 1.41470 1.78337 1.97060 2.89703 3.07148 3.28084 3.32311 3.44148 3.46524 3.71778 4.53239 4.65187 4.83499 4.97371 5.04657 5.14960 5.23223 5.25113 5.29471 5.44068 5.50446 5.54156 5.69228 5.70573 5.78355 5.82105 5.84406 5.96773 5.99866 6.10283 6.16498 6.17661 6.27330 6.35424 6.42196 6.45621 6.74436 6.85272 6.96177 7.63806 7.78930 7.98120 8.34144 8.38862 8.49304 9.16036 9.87527 10.07632 11.38693 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.003488 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.274958 B = 8024.459636 C = 9271.121159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.059 0.941 4 C -0.137 4.137 5 C 0.149 3.851 6 H 0.090 0.910 7 C -0.162 4.162 8 N -0.695 5.695 9 C 0.526 3.474 10 O -0.553 6.553 11 C 0.095 3.905 12 N -0.705 5.705 13 C 0.578 3.422 14 O -0.536 6.536 15 C -0.149 4.149 16 C -0.083 4.083 17 C -0.239 4.239 18 S 0.179 5.821 19 C -0.207 4.207 20 N -0.740 5.740 21 C -0.240 4.240 22 H 0.088 0.912 23 C 0.010 3.990 24 N -0.928 5.928 25 Si 0.862 3.138 26 H -0.276 1.276 27 H -0.290 1.290 28 H -0.275 1.275 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.399 0.601 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.409 0.591 41 H 0.155 0.845 42 H 0.169 0.831 43 H 0.173 0.827 44 H 0.352 0.648 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.383 -1.745 -10.259 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.077 0.923 4 C -0.176 4.176 5 C 0.044 3.956 6 H 0.108 0.892 7 C -0.221 4.221 8 N -0.347 5.347 9 C 0.312 3.688 10 O -0.432 6.432 11 C -0.032 4.032 12 N -0.360 5.360 13 C 0.363 3.637 14 O -0.415 6.415 15 C -0.167 4.167 16 C -0.112 4.112 17 C -0.374 4.374 18 S 0.444 5.556 19 C -0.346 4.346 20 N -0.383 5.383 21 C -0.370 4.370 22 H 0.106 0.894 23 C -0.186 4.186 24 N -0.576 5.576 25 Si 0.691 3.309 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.201 1.201 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.235 0.765 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.247 0.753 41 H 0.172 0.828 42 H 0.187 0.813 43 H 0.190 0.810 44 H 0.185 0.815 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.478 -0.387 -10.285 16.959 hybrid contribution -1.327 -2.531 0.541 2.909 sum 12.152 -2.918 -9.744 15.847 Atomic orbital electron populations 1.22410 0.98937 1.00694 1.00495 1.20257 0.91681 0.96056 0.85405 0.92301 1.22278 0.93878 1.01625 0.99820 1.20887 0.92445 0.98008 0.84232 0.89206 1.22213 1.01656 1.00898 0.97314 1.45807 1.18731 1.36936 1.33206 1.20152 0.81717 0.84414 0.82510 1.90610 1.65536 1.26955 1.60078 1.21194 0.87166 0.96048 0.98818 1.45417 1.22458 1.29262 1.38841 1.17526 0.82755 0.84253 0.79187 1.90804 1.73086 1.24108 1.53455 1.20290 0.98026 0.97296 1.01058 1.21149 0.92319 1.00889 0.96811 1.25486 1.04355 1.00484 1.07043 1.82983 1.17008 1.25315 1.30260 1.25755 1.02491 1.00553 1.05753 1.42771 1.79816 1.06476 1.09283 1.19006 1.40675 0.92490 0.84840 0.89447 1.24680 1.02047 0.96553 0.95361 1.69668 1.54176 1.34079 0.99631 0.86941 0.78092 0.88143 0.77689 1.20222 1.21600 1.20128 0.93799 0.92369 0.94259 0.91828 0.90353 0.91793 0.92492 0.92721 0.76512 0.87252 0.88825 0.75332 0.82787 0.81330 0.80998 0.81461 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.52 37.16 0.35 -2.33 16 2 C 0.18 3.03 2.90 -67.93 -0.20 2.83 16 3 H 0.06 1.11 8.04 -51.93 -0.42 0.70 16 4 C -0.14 -1.81 4.44 -26.73 -0.12 -1.93 16 5 C 0.15 2.08 2.65 -67.93 -0.18 1.90 16 6 H 0.09 1.45 7.46 -51.93 -0.39 1.06 16 7 C -0.16 -1.84 9.50 37.15 0.35 -1.49 16 8 N -0.70 -10.94 3.78 -53.81 -0.20 -11.14 16 9 C 0.53 9.19 7.87 -10.99 -0.09 9.11 16 10 O -0.55 -10.56 15.28 5.56 0.08 -10.48 16 11 C 0.09 1.66 6.16 -5.19 -0.03 1.63 16 12 N -0.71 -11.83 5.50 -62.64 -0.34 -12.17 16 13 C 0.58 10.16 7.79 -12.63 -0.10 10.06 16 14 O -0.54 -11.19 16.80 5.25 0.09 -11.11 16 15 C -0.15 -2.14 5.98 -104.63 -0.63 -2.76 16 16 C -0.08 -1.05 10.10 -39.02 -0.39 -1.44 16 17 C -0.24 -2.36 11.12 28.86 0.32 -2.04 16 18 S 0.18 1.66 23.02 -107.50 -2.48 -0.81 16 19 C -0.21 -2.43 10.38 29.93 0.31 -2.12 16 20 N -0.74 -15.56 3.40 -53.42 -0.18 -15.74 16 21 C -0.24 -6.34 10.42 -15.06 -0.16 -6.50 16 22 H 0.09 2.57 8.05 -52.49 -0.42 2.15 16 23 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 24 N -0.93 -28.63 13.97 55.49 0.78 -27.86 16 25 Si 0.86 20.88 27.46 -169.99 -4.67 16.21 16 26 H -0.28 -6.49 6.42 56.52 0.36 -6.13 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.18 6.69 56.52 0.38 -5.80 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.40 6.16 6.67 -40.82 -0.27 5.89 16 38 H 0.11 2.26 7.27 -51.93 -0.38 1.88 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.41 6.29 5.94 -40.82 -0.24 6.05 16 41 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.17 1.19 8.06 -52.48 -0.42 0.76 16 43 H 0.17 1.78 7.01 -52.48 -0.37 1.41 16 44 H 0.35 7.15 4.14 -40.82 -0.17 6.98 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -33.61 386.01 -8.26 -41.87 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: -6.50 Total: 20.32 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -0.65 Total: 5.10 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: 0.05 Total: -66.91 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.17 Total: -21.58 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.48 Total: -0.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.61 -8.26 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146486998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.289 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds