Wall clock time and date at job start Sat Apr 11 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47157 * 2 1 4 4 C 1.52995 * 109.47579 * 240.00476 * 2 1 3 5 5 C 1.53001 * 109.47625 * 175.00180 * 4 2 1 6 6 H 1.09004 * 109.46702 * 304.99320 * 5 4 2 7 7 C 1.52999 * 109.47160 * 184.99777 * 5 4 2 8 8 N 1.46493 * 109.47088 * 64.99546 * 5 4 2 9 9 C 1.36936 * 120.00019 * 205.00030 * 8 5 4 10 10 H 1.08003 * 120.00072 * 0.02562 * 9 8 5 11 11 C 1.38815 * 120.00212 * 179.97438 * 9 8 5 12 12 N 1.31613 * 119.99925 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99931 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46979 * 90.00782 * 13 11 9 15 15 H 1.48500 * 109.47409 * 210.00312 * 13 11 9 16 16 H 1.48497 * 109.47268 * 330.00724 * 13 11 9 17 17 N 1.46499 * 109.47313 * 119.99958 * 2 1 3 18 18 C 1.34783 * 119.99943 * 275.00344 * 17 2 1 19 19 O 1.21275 * 119.99914 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99600 * 179.97438 * 18 17 2 21 21 N 1.46498 * 109.46769 * 179.97438 * 20 18 17 22 22 C 1.34777 * 119.99828 * 179.72341 * 21 20 18 23 23 O 1.21643 * 119.99981 * 0.28057 * 22 21 20 24 24 C 1.47188 * 120.00049 * 180.27659 * 22 21 20 25 25 C 1.44430 * 123.45971 * 179.73084 * 24 22 21 26 26 C 1.32772 * 113.07978 * 179.80974 * 25 24 22 27 27 S 1.75503 * 110.57905 * 0.44219 * 26 25 24 28 28 C 1.36005 * 123.46057 * 0.03158 * 24 22 21 29 29 H 1.08995 * 109.47358 * 299.99780 * 1 2 3 30 30 H 1.09001 * 109.46931 * 59.99894 * 1 2 3 31 31 H 1.08999 * 109.46732 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46674 * 295.00363 * 4 2 1 33 33 H 1.09002 * 109.47209 * 54.99507 * 4 2 1 34 34 H 1.08998 * 109.47316 * 300.00007 * 7 5 4 35 35 H 1.09001 * 109.47074 * 59.99641 * 7 5 4 36 36 H 1.09000 * 109.46843 * 179.97438 * 7 5 4 37 37 H 0.97001 * 120.00390 * 24.99968 * 8 5 4 38 38 H 0.96998 * 119.99916 * 179.97438 * 12 11 9 39 39 H 0.96995 * 119.99612 * 94.99585 * 17 2 1 40 40 H 1.09004 * 109.47210 * 60.00194 * 20 18 17 41 41 H 1.08994 * 109.47121 * 300.00164 * 20 18 17 42 42 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 43 43 H 1.07999 * 123.46002 * 0.02562 * 25 24 22 44 44 H 1.07999 * 124.70904 * 180.18353 * 26 25 24 45 45 H 1.08000 * 124.59169 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.8571 0.4360 -1.2678 7 6 4.0646 -1.2249 -2.6240 8 7 4.1537 -1.3341 -0.1824 9 6 5.3944 -0.9855 0.2807 10 1 5.9386 -0.1788 -0.1879 11 6 5.9521 -1.6682 1.3529 12 7 5.2887 -2.6509 1.9242 13 14 7.6442 -1.1922 1.9850 14 1 7.5052 -0.1548 3.0384 15 1 8.3147 -2.3887 2.5542 16 1 8.4578 -0.6546 0.8651 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0182 2.3572 19 8 1.8590 1.1586 2.4115 20 6 2.6489 -0.7288 3.5877 21 7 2.6988 0.2127 4.7090 22 6 3.1147 -0.2045 5.9212 23 8 3.4534 -1.3616 6.0830 24 6 3.1591 0.7399 7.0493 25 6 3.5861 0.3724 8.3792 26 6 3.5493 1.3858 9.2363 27 16 2.9728 2.8424 8.4450 28 6 2.7966 2.0468 6.9478 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7714 -1.2056 33 1 1.6055 -0.2616 -2.1370 34 1 3.7724 -2.2739 -2.6700 35 1 3.6265 -0.6885 -3.4657 36 1 5.1509 -1.1475 -2.6701 37 1 3.6648 -2.0583 0.2387 38 1 5.6785 -3.1282 2.6732 39 1 2.2490 -1.6317 1.1525 40 1 3.6481 -1.1213 3.3986 41 1 1.9761 -1.5506 3.8325 42 1 2.4284 1.1353 4.5801 43 1 3.9060 -0.6235 8.6479 44 1 3.8307 1.3215 10.2769 45 1 2.4440 2.5168 6.0416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146487000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:37 Heat of formation + Delta-G solvation = -30.308288 kcal Electronic energy + Delta-G solvation = -27764.462364 eV Core-core repulsion = 23908.991184 eV Total energy + Delta-G solvation = -3855.471181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.93969 -39.10837 -37.01889 -36.63690 -34.42778 -33.92997 -32.33896 -30.89948 -30.06751 -28.60012 -27.17177 -26.34516 -24.70140 -23.66428 -21.74567 -20.87838 -20.30767 -19.74841 -19.18668 -18.25556 -17.21912 -17.12374 -16.13194 -15.92345 -15.43666 -15.12656 -14.76354 -14.46925 -14.28735 -13.84471 -13.67429 -13.35089 -13.17991 -13.08582 -12.85411 -12.74187 -12.60546 -12.47827 -12.22569 -12.01192 -11.83700 -11.75019 -11.68409 -11.23558 -11.02909 -10.83905 -10.74634 -10.41629 -10.25062 -9.92837 -9.73730 -9.69120 -9.40719 -9.17243 -9.00802 -8.81171 -8.50828 -8.45057 -6.96672 -5.81141 -3.07872 0.69976 1.42638 1.79412 2.00820 3.10728 3.23576 3.44062 3.49825 3.52724 3.54946 3.92919 4.58776 4.67255 5.01249 5.05723 5.16699 5.23512 5.32105 5.39358 5.48700 5.53637 5.63576 5.72632 5.79930 5.84862 5.91893 5.97230 5.98893 6.10527 6.17755 6.21351 6.30307 6.33991 6.38018 6.51021 6.57599 6.61222 6.83147 7.01419 7.08610 7.69685 7.76313 8.04243 8.38001 8.46745 8.71961 9.49962 10.02703 10.38222 11.41067 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011312 B = 0.003551 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.742975 B = 7883.415948 C = 9539.929556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.083 0.917 4 C -0.134 4.134 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.164 4.164 8 N -0.717 5.717 9 C -0.233 4.233 10 H 0.067 0.933 11 C -0.008 4.008 12 N -0.931 5.931 13 Si 0.898 3.102 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.285 1.285 17 N -0.689 5.689 18 C 0.527 3.473 19 O -0.568 6.568 20 C 0.096 3.904 21 N -0.708 5.708 22 C 0.573 3.427 23 O -0.531 6.531 24 C -0.147 4.147 25 C -0.083 4.083 26 C -0.239 4.239 27 S 0.174 5.826 28 C -0.210 4.210 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.377 0.623 38 H 0.257 0.743 39 H 0.408 0.592 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.405 0.595 43 H 0.155 0.845 44 H 0.169 0.831 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 7.923 6.483 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.101 0.899 4 C -0.173 4.173 5 C 0.060 3.940 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.360 5.360 9 C -0.364 4.364 10 H 0.085 0.915 11 C -0.204 4.204 12 N -0.580 5.580 13 Si 0.729 3.271 14 H -0.219 1.219 15 H -0.218 1.218 16 H -0.211 1.211 17 N -0.341 5.341 18 C 0.313 3.687 19 O -0.448 6.448 20 C -0.031 4.031 21 N -0.362 5.362 22 C 0.358 3.642 23 O -0.409 6.409 24 C -0.165 4.165 25 C -0.112 4.112 26 C -0.374 4.374 27 S 0.439 5.561 28 C -0.348 4.348 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.212 0.788 38 H 0.067 0.933 39 H 0.246 0.754 40 H 0.148 0.852 41 H 0.108 0.892 42 H 0.243 0.757 43 H 0.173 0.827 44 H 0.186 0.814 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.091 9.439 7.119 15.543 hybrid contribution 1.222 -1.547 -0.271 1.991 sum -8.868 7.892 6.848 13.705 Atomic orbital electron populations 1.22206 0.96206 1.01715 1.01936 1.20826 0.92481 0.97711 0.84434 0.89854 1.22216 0.97867 1.00681 0.96500 1.20278 0.89635 0.95874 0.88259 0.93470 1.22424 1.01558 1.00367 0.98047 1.42450 1.18738 1.40015 1.34819 1.19165 0.93387 1.13238 1.10627 0.91525 1.24582 0.98309 0.98549 0.98918 1.69534 1.38101 1.24360 1.25962 0.86333 0.84704 0.77363 0.78663 1.21871 1.21788 1.21060 1.45856 1.65213 1.14619 1.08432 1.20230 0.76450 0.86918 0.85098 1.90581 1.52533 1.16180 1.85548 1.21247 1.06118 0.91688 0.84031 1.45497 1.67255 1.14696 1.08741 1.17511 0.77611 0.87212 0.81886 1.90828 1.47935 1.18333 1.83799 1.20375 1.07338 0.93371 0.95382 1.21177 0.99148 1.00608 0.90271 1.25479 1.11040 0.96482 1.04354 1.82960 1.61664 1.12545 0.98953 1.25739 1.06225 0.98342 1.04473 0.92461 0.92078 0.92724 0.91640 0.90770 0.93583 0.94627 0.92865 0.78756 0.93262 0.75367 0.85223 0.89153 0.75738 0.82742 0.81375 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 2 C 0.15 2.27 2.57 -67.93 -0.17 2.10 16 3 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.13 -1.91 4.43 -26.73 -0.12 -2.03 16 5 C 0.17 3.04 2.89 -67.93 -0.20 2.85 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 C -0.16 -2.75 9.49 37.16 0.35 -2.39 16 8 N -0.72 -15.71 3.84 -53.43 -0.21 -15.92 16 9 C -0.23 -5.98 9.93 -15.06 -0.15 -6.13 16 10 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.93 -25.33 12.78 55.49 0.71 -24.62 16 13 Si 0.90 22.30 29.55 -169.99 -5.02 17.28 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 N -0.69 -11.69 3.80 -53.81 -0.20 -11.90 16 18 C 0.53 9.78 7.86 -10.98 -0.09 9.69 16 19 O -0.57 -11.30 15.33 5.56 0.09 -11.21 16 20 C 0.10 1.79 6.15 -5.19 -0.03 1.76 16 21 N -0.71 -12.26 5.50 -62.64 -0.34 -12.61 16 22 C 0.57 10.33 7.79 -12.63 -0.10 10.24 16 23 O -0.53 -11.42 16.80 5.24 0.09 -11.33 16 24 C -0.15 -2.14 5.98 -104.63 -0.63 -2.76 16 25 C -0.08 -1.06 10.10 -39.02 -0.39 -1.46 16 26 C -0.24 -2.39 11.12 28.86 0.32 -2.07 16 27 S 0.17 1.62 23.02 -107.50 -2.48 -0.86 16 28 C -0.21 -2.49 10.38 29.93 0.31 -2.17 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.38 8.47 5.70 -40.82 -0.23 8.23 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.41 7.11 6.51 -40.82 -0.27 6.84 16 40 H 0.13 2.92 7.86 -51.93 -0.41 2.51 16 41 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.41 6.42 5.93 -40.82 -0.24 6.17 16 43 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 44 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.17 1.79 7.01 -52.49 -0.37 1.42 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -30.53 389.84 -8.66 -39.18 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -6.53 Total: 20.47 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.63 Total: 5.63 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -0.05 Total: -65.04 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.17 Total: -22.54 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.48 Total: -0.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.53 -8.66 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146487000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.875 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds