Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47440 * 2 1 4 4 C 1.50701 * 109.47356 * 120.00699 * 2 1 3 5 5 O 1.21280 * 120.00496 * 119.99853 * 4 2 1 6 6 N 1.34783 * 119.99924 * 299.99736 * 4 2 1 7 7 C 1.46496 * 120.00288 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.47150 * 179.97438 * 7 6 4 9 9 C 1.52991 * 109.47079 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.47276 * 180.02562 * 9 8 7 11 11 C 1.46903 * 111.00407 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47379 * 180.02562 * 11 10 9 13 13 O 1.21294 * 120.00083 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00011 * 179.97438 * 12 11 10 15 15 C 1.37100 * 119.99915 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00078 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99871 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00061 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99976 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47004 * 90.00188 * 19 17 15 21 21 H 1.48493 * 109.47290 * 210.00579 * 19 17 15 22 22 H 1.48510 * 109.46956 * 330.00662 * 19 17 15 23 23 C 1.50707 * 109.46999 * 240.00150 * 2 1 3 24 24 C 1.33388 * 125.19940 * 120.00096 * 23 2 1 25 25 C 1.38433 * 114.91766 * 179.97438 * 24 23 2 26 26 C 1.33389 * 114.92022 * 0.02562 * 25 24 23 27 27 S 1.75879 * 125.20222 * 299.97622 * 23 2 1 28 28 H 1.09005 * 109.47030 * 299.99413 * 1 2 3 29 29 H 1.09002 * 109.47275 * 59.99669 * 1 2 3 30 30 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 31 31 H 0.97007 * 119.99248 * 359.97438 * 6 4 2 32 32 H 1.08998 * 109.46977 * 300.00122 * 7 6 4 33 33 H 1.09004 * 109.47051 * 59.99952 * 7 6 4 34 34 H 1.09000 * 109.46999 * 300.00071 * 8 7 6 35 35 H 1.08998 * 109.46604 * 59.99895 * 8 7 6 36 36 H 1.09000 * 109.47289 * 299.99924 * 9 8 7 37 37 H 1.09004 * 109.47061 * 60.00264 * 9 8 7 38 38 H 1.00902 * 111.00416 * 56.04781 * 10 9 8 39 39 H 1.09006 * 109.46681 * 299.99741 * 11 10 9 40 40 H 1.08994 * 109.47361 * 59.99738 * 11 10 9 41 41 H 0.96997 * 120.00052 * 0.02562 * 14 12 11 42 42 H 0.97000 * 120.00042 * 179.97438 * 18 17 15 43 43 H 1.08000 * 122.54563 * 359.95533 * 24 23 2 44 44 H 1.07998 * 122.53579 * 180.02562 * 25 24 23 45 45 H 1.07995 * 125.20209 * 180.26467 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4546 7 6 2.1956 -0.9405 3.6507 8 6 1.6860 -0.2190 4.9000 9 6 2.1960 -0.9403 6.1491 10 7 1.7063 -0.2480 7.3486 11 6 2.1778 -0.9139 8.5702 12 6 1.6561 -0.1774 9.7771 13 8 0.9603 0.8057 9.6337 14 7 1.9626 -0.6112 11.0157 15 6 1.4884 0.0591 12.1137 16 1 0.8689 0.9345 11.9860 17 6 1.8039 -0.3885 13.3907 18 7 2.5573 -1.4540 13.5461 19 14 1.1573 0.5243 14.8867 20 1 -0.1571 -0.0422 15.2823 21 1 2.1178 0.3775 16.0096 22 1 0.9970 1.9635 14.5573 23 6 2.0323 -0.7104 -1.2305 24 6 2.8024 -0.1645 -2.1730 25 6 3.1404 -1.0127 -3.2135 26 6 2.6442 -2.2470 -3.1163 27 16 1.6932 -2.3861 -1.6432 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.1494 0.5388 2.5436 32 1 1.8327 -1.9683 3.6508 33 1 3.2856 -0.9401 3.6505 34 1 2.0493 0.8087 4.8996 35 1 0.5960 -0.2191 4.9003 36 1 1.8323 -1.9679 6.1492 37 1 3.2860 -0.9407 6.1489 38 1 0.6997 -0.1780 7.3401 39 1 1.8146 -1.9415 8.5871 40 1 3.2676 -0.9133 8.5869 41 1 2.5192 -1.3973 11.1304 42 1 2.7779 -1.7662 14.4376 43 1 3.1367 0.8614 -2.1279 44 1 3.7589 -0.6987 -4.0413 45 1 2.8061 -3.0411 -3.8302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166492314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = -48.762572 kcal Electronic energy + Delta-G solvation = -25004.229390 eV Core-core repulsion = 21147.957972 eV Total energy + Delta-G solvation = -3856.271418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.30597 -38.34590 -38.05919 -36.57960 -34.92092 -34.36791 -33.83361 -31.44623 -31.08466 -28.94981 -27.21497 -25.45398 -24.74606 -23.65608 -22.78432 -21.75529 -20.54556 -19.71742 -19.23475 -17.95321 -17.80528 -16.99118 -16.46605 -16.18082 -15.87704 -15.74629 -15.38571 -14.75487 -14.51832 -14.44884 -14.14889 -13.94642 -13.51344 -13.43783 -13.41150 -13.05799 -12.89088 -12.68701 -12.55645 -12.16519 -12.08806 -11.93536 -11.83758 -11.79020 -11.47688 -11.44136 -11.09567 -10.96260 -10.93387 -10.39884 -10.22643 -10.13338 -9.51699 -9.38154 -8.98655 -8.63955 -8.48420 -8.08824 -7.96814 -6.42329 -3.83285 0.68513 1.37303 1.76668 2.30040 2.39709 2.87469 3.17384 3.26145 3.32110 3.89959 4.04592 4.07511 4.28853 4.31335 4.52100 4.71716 4.77327 4.79685 4.94458 5.02540 5.09350 5.15994 5.17811 5.24549 5.25165 5.29092 5.40761 5.47979 5.56247 5.61147 5.76674 5.78058 5.94131 5.96643 5.97175 6.00814 6.12986 6.15419 6.25920 7.13786 7.17548 7.54530 7.62762 7.87775 8.05575 8.60487 9.17098 9.53578 10.04903 10.75378 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.044664 B = 0.001313 C = 0.001296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.758126 B =21320.165682 C =21607.144601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 H 0.115 0.885 4 C 0.512 3.488 5 O -0.525 6.525 6 N -0.727 5.727 7 C 0.121 3.879 8 C -0.129 4.129 9 C 0.062 3.938 10 N -0.670 5.670 11 C 0.051 3.949 12 C 0.440 3.560 13 O -0.584 6.584 14 N -0.563 5.563 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.901 5.901 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.160 4.160 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.223 4.223 27 S 0.139 5.861 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.402 0.598 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.349 0.651 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 -0.678 -32.619 32.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.064 4.064 3 H 0.133 0.867 4 C 0.297 3.703 5 O -0.400 6.400 6 N -0.379 5.379 7 C -0.003 4.003 8 C -0.167 4.167 9 C -0.068 4.068 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.226 3.774 13 O -0.469 6.469 14 N -0.200 5.200 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.279 4.279 24 C -0.169 4.169 25 C -0.168 4.168 26 C -0.359 4.359 27 S 0.404 5.596 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.168 0.832 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.617 -1.566 -31.921 32.001 hybrid contribution 0.255 0.575 0.280 0.688 sum -1.362 -0.991 -31.641 31.686 Atomic orbital electron populations 1.21867 0.91546 1.03337 1.03490 1.19823 0.97707 0.99939 0.88961 0.86747 1.20447 0.80535 0.84865 0.84464 1.90758 1.36963 1.25787 1.86525 1.45974 1.54014 1.32345 1.05566 1.21343 0.99659 0.96326 0.82988 1.21742 1.01412 1.00910 0.92642 1.21824 1.00702 0.94926 0.89326 1.60042 1.17460 1.52810 0.99888 1.21671 1.01044 0.95491 0.89999 1.19808 0.86034 0.87514 0.84080 1.90517 1.42122 1.28378 1.85846 1.41864 1.46036 1.27799 1.04284 1.19712 1.29165 1.10695 0.83437 0.87909 1.25264 0.96919 0.96590 0.99129 1.69611 1.37011 1.23565 1.24084 0.85852 0.78330 0.79802 0.80273 1.20427 1.20909 1.19393 1.23898 1.06008 0.97801 1.00144 1.20068 1.00462 1.01527 0.94800 1.20081 1.03069 0.93174 1.00460 1.25716 1.06340 1.01540 1.02315 1.84319 1.49808 1.09420 1.16085 0.91106 0.90713 0.91767 0.76380 0.91388 0.91175 0.90099 0.91243 0.95248 0.90774 0.83195 0.93819 0.89541 0.77437 0.91858 0.84475 0.84467 0.82061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.01 37.15 0.33 -0.39 16 2 C -0.04 -0.28 3.10 -92.92 -0.29 -0.57 16 3 H 0.11 0.54 8.08 -51.93 -0.42 0.12 16 4 C 0.51 4.88 7.12 -10.98 -0.08 4.80 16 5 O -0.52 -7.12 15.25 5.56 0.08 -7.04 16 6 N -0.73 -5.55 5.45 -60.29 -0.33 -5.88 16 7 C 0.12 1.07 5.67 -4.04 -0.02 1.04 16 8 C -0.13 -1.16 5.59 -26.73 -0.15 -1.30 16 9 C 0.06 0.71 5.68 -3.83 -0.02 0.69 16 10 N -0.67 -10.45 6.13 -115.06 -0.70 -11.16 16 11 C 0.05 0.89 6.17 -4.97 -0.03 0.85 16 12 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 13 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 14 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 15 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 16 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 19 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.16 -1.38 4.60 -36.00 -0.17 -1.54 16 24 C -0.14 -1.08 10.01 -41.20 -0.41 -1.50 16 25 C -0.14 -1.03 10.18 -41.20 -0.42 -1.45 16 26 C -0.22 -1.74 11.23 29.04 0.33 -1.42 16 27 S 0.14 1.26 22.18 -107.50 -2.38 -1.12 16 28 H 0.07 0.24 7.57 -51.93 -0.39 -0.15 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.39 8.00 -51.93 -0.42 -0.03 16 31 H 0.40 2.02 7.89 -40.82 -0.32 1.70 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.35 5.55 8.43 -39.29 -0.33 5.22 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 43 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 45 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -34.34 396.16 -9.68 -44.02 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.79 Total: 11.62 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.25 Total: 1.49 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.37 Total: -55.18 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.38 Total: -1.12 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.34 -9.68 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166492314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.745 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds