Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 5 5 O 1.21283 * 119.99803 * 239.99993 * 4 2 1 6 6 N 1.34777 * 119.99675 * 60.27868 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47306 * 180.02562 * 8 7 6 10 10 N 1.46899 * 109.47289 * 179.97438 * 9 8 7 11 11 C 1.46901 * 110.99997 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47038 * 180.02562 * 11 10 9 13 13 O 1.21293 * 120.00270 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00380 * 179.97438 * 12 11 10 15 15 C 1.37089 * 120.00357 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00275 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99901 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00317 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99852 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46958 * 60.00361 * 19 17 15 21 21 H 1.48495 * 109.46913 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47175 * 299.99984 * 19 17 15 23 23 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 24 24 C 1.33386 * 125.20506 * 240.00294 * 23 2 1 25 25 C 1.38423 * 114.91934 * 179.97438 * 24 23 2 26 26 C 1.33382 * 114.92452 * 359.97438 * 25 24 23 27 27 S 1.75887 * 109.59293 * 359.75798 * 26 25 24 28 28 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 29 29 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 30 30 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 32 32 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 33 33 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 34 34 H 1.09009 * 109.47378 * 299.99899 * 8 7 6 35 35 H 1.08993 * 109.47209 * 59.99808 * 8 7 6 36 36 H 1.08995 * 109.47215 * 299.99822 * 9 8 7 37 37 H 1.09001 * 109.47513 * 60.00266 * 9 8 7 38 38 H 1.00905 * 110.99988 * 56.04625 * 10 9 8 39 39 H 1.09004 * 109.47128 * 299.99870 * 11 10 9 40 40 H 1.08990 * 109.47543 * 60.00417 * 11 10 9 41 41 H 0.97004 * 119.99353 * 0.02562 * 14 12 11 42 42 H 0.96992 * 120.00213 * 180.02562 * 18 17 15 43 43 H 1.07993 * 122.53981 * 359.97438 * 24 23 2 44 44 H 1.08001 * 122.53676 * 180.02562 * 25 24 23 45 45 H 1.08002 * 125.21075 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7114 -0.2468 -2.4545 7 6 2.2048 -0.9340 -3.6505 8 6 1.6990 -0.2100 -4.8998 9 6 2.2137 -0.9280 -6.1490 10 7 1.7275 -0.2332 -7.3485 11 6 2.2026 -0.8966 -8.5700 12 6 1.6855 -0.1569 -9.7769 13 8 0.9892 0.8259 -9.6336 14 7 1.9967 -0.5874 -11.0156 15 6 1.5258 0.0851 -12.1135 16 1 0.9052 0.9597 -11.9859 17 6 1.8471 -0.3584 -13.3906 18 7 2.6019 -1.4229 -13.5459 19 14 1.2049 0.5576 -14.8866 20 1 1.6979 1.9581 -14.8587 21 1 1.6859 -0.1125 -16.1214 22 1 -0.2800 0.5550 -14.8689 23 6 2.0323 -0.7103 1.2306 24 6 2.8024 -0.1644 2.1730 25 6 3.1394 -1.0122 3.2141 26 6 2.6426 -2.2462 3.1174 27 16 1.6856 -2.3833 1.6481 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.1537 0.5418 -2.5435 32 1 3.2948 -0.9335 -3.6463 33 1 1.8419 -1.9618 -3.6548 34 1 0.6089 -0.2108 -4.9040 35 1 2.0614 0.8179 -4.8959 36 1 3.3036 -0.9276 -6.1452 37 1 1.8508 -1.9558 -6.1528 38 1 1.9962 0.7393 -7.3369 39 1 3.2926 -0.8959 -8.5834 40 1 1.8396 -1.9241 -8.5902 41 1 2.5532 -1.3736 -11.1303 42 1 2.8264 -1.7323 -14.4373 43 1 3.1375 0.8612 2.1273 44 1 3.7571 -0.6979 4.0424 45 1 2.8007 -3.0390 3.8336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166492315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -48.710212 kcal Electronic energy + Delta-G solvation = -25002.448472 eV Core-core repulsion = 21146.179324 eV Total energy + Delta-G solvation = -3856.269148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30440 -38.34418 -38.06031 -36.57847 -34.91987 -34.36657 -33.83244 -31.44539 -31.08380 -28.94815 -27.21422 -25.45129 -24.74476 -23.65534 -22.78372 -21.75505 -20.54430 -19.71720 -19.23307 -17.95324 -17.80380 -17.00133 -16.40909 -16.19538 -15.98737 -15.68142 -15.34304 -14.75306 -14.56095 -14.44671 -14.12948 -13.94985 -13.52604 -13.49707 -13.29176 -13.04796 -12.95922 -12.67074 -12.54128 -12.19318 -12.05779 -11.92527 -11.84081 -11.79321 -11.47534 -11.43926 -11.08203 -10.95639 -10.92855 -10.44672 -10.22057 -10.13184 -9.50660 -9.38116 -8.98614 -8.63987 -8.48318 -8.08803 -7.96689 -6.42063 -3.83096 0.68586 1.37378 1.76788 2.30086 2.39719 2.87460 3.19801 3.25615 3.29910 3.90099 4.04761 4.07617 4.28869 4.31572 4.52493 4.71753 4.77393 4.79480 4.94545 5.02406 5.09925 5.16529 5.18113 5.24650 5.25364 5.28825 5.41067 5.47906 5.57357 5.61098 5.76629 5.78148 5.94178 5.96610 5.97231 6.00884 6.13013 6.15351 6.26025 7.13884 7.17599 7.54490 7.62772 7.87867 8.05464 8.60698 9.17151 9.53657 10.05072 10.75564 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.044639 B = 0.001313 C = 0.001295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.098615 B =21327.690853 C =21613.041453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 H 0.114 0.886 4 C 0.512 3.488 5 O -0.525 6.525 6 N -0.727 5.727 7 C 0.121 3.879 8 C -0.129 4.129 9 C 0.062 3.938 10 N -0.669 5.669 11 C 0.051 3.949 12 C 0.440 3.560 13 O -0.584 6.584 14 N -0.563 5.563 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.160 4.160 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.223 4.223 27 S 0.139 5.861 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.402 0.598 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.349 0.651 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 0.252 32.603 32.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 H 0.132 0.868 4 C 0.297 3.703 5 O -0.400 6.400 6 N -0.379 5.379 7 C -0.003 4.003 8 C -0.167 4.167 9 C -0.068 4.068 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.225 3.775 13 O -0.469 6.469 14 N -0.199 5.199 15 C -0.431 4.431 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.278 4.278 24 C -0.169 4.169 25 C -0.168 4.168 26 C -0.359 4.359 27 S 0.404 5.596 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.168 0.832 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.408 -1.427 31.904 31.967 hybrid contribution 1.727 1.627 -0.275 2.389 sum 0.318 0.200 31.630 31.632 Atomic orbital electron populations 1.21869 0.91513 1.03380 1.03504 1.19825 0.97737 0.99896 0.88966 0.86783 1.20446 0.80540 0.84860 0.84461 1.90759 1.36956 1.25793 1.86528 1.45971 1.53988 1.32369 1.05569 1.21341 0.99371 0.96614 0.82989 1.21743 1.02588 0.99739 0.92641 1.21826 0.96946 0.98689 0.89323 1.60050 1.63568 1.06691 0.99881 1.21669 0.97484 0.99042 0.90003 1.19809 0.86011 0.87556 0.84081 1.90516 1.41823 1.28694 1.85846 1.41857 1.45991 1.27825 1.04275 1.19660 1.29213 1.10754 0.83453 0.87964 1.25263 0.96905 0.96580 0.99120 1.69601 1.36880 1.23607 1.24192 0.85913 0.79193 0.79240 0.79837 1.19919 1.20967 1.19874 1.23898 1.05961 0.97848 1.00121 1.20060 1.00552 1.01503 0.94773 1.20075 1.03124 0.93149 1.00448 1.25715 1.06256 1.01555 1.02377 1.84328 1.49315 1.09665 1.16284 0.90721 0.91073 0.91732 0.76380 0.91403 0.91159 0.90094 0.91247 0.95249 0.90772 0.83198 0.93822 0.89540 0.77434 0.91802 0.84498 0.84476 0.82057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.01 37.16 0.33 -0.40 16 2 C -0.04 -0.28 3.10 -92.92 -0.29 -0.57 16 3 H 0.11 0.54 8.09 -51.92 -0.42 0.12 16 4 C 0.51 4.89 7.12 -10.98 -0.08 4.81 16 5 O -0.53 -7.13 15.27 5.55 0.08 -7.05 16 6 N -0.73 -5.55 5.45 -60.30 -0.33 -5.88 16 7 C 0.12 1.07 5.67 -4.04 -0.02 1.04 16 8 C -0.13 -1.16 5.59 -26.73 -0.15 -1.31 16 9 C 0.06 0.71 5.69 -3.83 -0.02 0.69 16 10 N -0.67 -10.45 6.13 -115.06 -0.70 -11.16 16 11 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 12 C 0.44 10.38 7.82 -10.98 -0.09 10.30 16 13 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 14 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 15 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 16 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 17 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 18 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 19 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.16 -1.38 4.60 -36.00 -0.17 -1.54 16 24 C -0.14 -1.09 10.01 -41.21 -0.41 -1.50 16 25 C -0.14 -1.03 10.18 -41.21 -0.42 -1.45 16 26 C -0.22 -1.74 11.23 29.04 0.33 -1.42 16 27 S 0.14 1.27 22.19 -107.50 -2.39 -1.12 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.25 7.57 -51.93 -0.39 -0.14 16 30 H 0.06 0.40 7.99 -51.93 -0.41 -0.02 16 31 H 0.40 2.02 7.90 -40.82 -0.32 1.70 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.35 5.56 8.43 -39.29 -0.33 5.23 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -34.31 396.19 -9.68 -43.99 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -6.79 Total: 11.67 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -1.25 Total: 1.47 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.37 Total: -55.17 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.17 Total: -22.78 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.39 Total: -1.12 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.31 -9.68 -43.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166492315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.723 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds