Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50697 * 109.46783 * 120.00217 * 2 1 3 5 5 O 1.21277 * 119.99998 * 120.00245 * 4 2 1 6 6 N 1.34777 * 120.00075 * 299.99428 * 4 2 1 7 7 C 1.46500 * 120.00084 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47249 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47518 * 180.02562 * 8 7 6 10 10 N 1.46896 * 109.47261 * 180.02562 * 9 8 7 11 11 C 1.46897 * 110.99814 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47093 * 179.97438 * 11 10 9 13 13 O 1.21290 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00414 * 179.97438 * 12 11 10 15 15 C 1.37095 * 120.00511 * 180.02562 * 14 12 11 16 16 H 1.07996 * 119.99714 * 359.97438 * 15 14 12 17 17 C 1.38946 * 119.99890 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00734 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99734 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47290 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46997 * 119.99983 * 19 17 15 22 22 H 1.48499 * 109.47077 * 239.99420 * 19 17 15 23 23 C 1.50706 * 109.46925 * 239.99957 * 2 1 3 24 24 C 1.38426 * 122.53521 * 120.00457 * 23 2 1 25 25 C 1.33394 * 114.91716 * 179.97438 * 24 23 2 26 26 S 1.75881 * 109.59532 * 359.97438 * 25 24 23 27 27 C 1.33381 * 122.53996 * 299.70981 * 23 2 1 28 28 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 30 30 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 31 31 H 0.96996 * 119.99636 * 0.02562 * 6 4 2 32 32 H 1.09000 * 109.47381 * 300.00406 * 7 6 4 33 33 H 1.09001 * 109.46596 * 60.00655 * 7 6 4 34 34 H 1.08996 * 109.47134 * 300.00839 * 8 7 6 35 35 H 1.09001 * 109.46997 * 60.00087 * 8 7 6 36 36 H 1.09004 * 109.46724 * 300.00525 * 9 8 7 37 37 H 1.08992 * 109.46645 * 59.99985 * 9 8 7 38 38 H 1.00907 * 110.99946 * 56.04795 * 10 9 8 39 39 H 1.09001 * 109.46981 * 299.99793 * 11 10 9 40 40 H 1.08996 * 109.47480 * 60.00171 * 11 10 9 41 41 H 0.97006 * 119.99173 * 0.02562 * 14 12 11 42 42 H 0.96998 * 120.00440 * 180.02562 * 18 17 15 43 43 H 1.07994 * 122.54163 * 359.95277 * 24 23 2 44 44 H 1.07992 * 125.19960 * 179.97438 * 25 24 23 45 45 H 1.08003 * 125.20684 * 0.02562 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 2.1945 -0.9410 3.6507 8 6 1.6842 -0.2200 4.8999 9 6 2.1941 -0.9412 6.1492 10 7 1.7036 -0.2493 7.3486 11 6 2.1740 -0.9158 8.5702 12 6 1.6526 -0.1791 9.7770 13 8 0.9571 0.8041 9.6336 14 7 1.9582 -0.6134 11.0158 15 6 1.4834 0.0565 12.1136 16 1 0.8648 0.9325 11.9859 17 6 1.7990 -0.3910 13.3907 18 7 2.5522 -1.4566 13.5462 19 14 1.1526 0.5223 14.8866 20 1 0.3350 1.6804 14.4445 21 1 0.3146 -0.3935 15.7017 22 1 2.2949 1.0061 15.7029 23 6 2.0323 -0.7105 -1.2305 24 6 2.8307 -0.0889 -2.1753 25 6 3.1884 -0.8597 -3.2035 26 16 2.5000 -2.4659 -3.0042 27 6 1.7460 -1.9873 -1.4889 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.1489 0.5385 2.5435 32 1 1.8307 -1.9685 3.6505 33 1 3.2845 -0.9414 3.6509 34 1 2.0475 0.8076 4.9003 35 1 0.5942 -0.2199 4.8995 36 1 1.8310 -1.9690 6.1490 37 1 3.2840 -0.9410 6.1494 38 1 0.6970 -0.1799 7.3397 39 1 1.8107 -1.9434 8.5864 40 1 3.2639 -0.9154 8.5877 41 1 2.5142 -1.4000 11.1304 42 1 2.7721 -1.7691 14.4377 43 1 3.1401 0.9419 -2.0867 44 1 3.8063 -0.5456 -4.0316 45 1 1.1423 -2.6288 -0.8640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166497561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = -49.236992 kcal Electronic energy + Delta-G solvation = -25055.441155 eV Core-core repulsion = 21199.149165 eV Total energy + Delta-G solvation = -3856.291991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51337 -38.38680 -38.17250 -36.50906 -34.89382 -33.89671 -33.57536 -31.39651 -31.04987 -29.11668 -27.19472 -25.81372 -24.91438 -23.64728 -22.72469 -21.74305 -20.52833 -19.26023 -18.97528 -18.15275 -17.89324 -17.25374 -16.55048 -16.18952 -15.92435 -15.44516 -15.21931 -14.77345 -14.48833 -14.43317 -14.10863 -13.93506 -13.50502 -13.45420 -13.41691 -13.13266 -12.87789 -12.71496 -12.63053 -12.12832 -12.07561 -11.90410 -11.78731 -11.77623 -11.47767 -11.43743 -11.10612 -11.03577 -10.95951 -10.34938 -10.23321 -10.03056 -9.52853 -9.34670 -9.07801 -8.71629 -8.48412 -8.08811 -7.96816 -6.42446 -3.83394 0.72242 1.35533 1.67631 2.27721 2.36858 2.96465 3.15847 3.26490 3.33716 3.89921 4.07656 4.24800 4.29373 4.33187 4.59882 4.76924 4.79708 4.81343 4.94340 4.99890 5.03432 5.16451 5.22340 5.25130 5.27281 5.32240 5.41493 5.48619 5.59608 5.63060 5.69339 5.78174 5.95070 5.97431 6.01131 6.03919 6.13024 6.16226 6.25928 7.17721 7.19043 7.54691 7.62827 7.93929 8.05753 8.60411 9.17151 9.53563 10.04822 10.75334 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.044986 B = 0.001283 C = 0.001263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.270604 B =21825.388265 C =22156.138995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 H 0.106 0.894 4 C 0.515 3.485 5 O -0.530 6.530 6 N -0.728 5.728 7 C 0.121 3.879 8 C -0.129 4.129 9 C 0.062 3.938 10 N -0.669 5.669 11 C 0.050 3.950 12 C 0.440 3.560 13 O -0.584 6.584 14 N -0.564 5.564 15 C -0.300 4.300 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.094 4.094 24 C -0.125 4.125 25 C -0.217 4.217 26 S 0.093 5.907 27 C -0.173 4.173 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.401 0.599 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.349 0.651 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.139 0.861 44 H 0.163 0.837 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 -0.505 -32.860 32.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 H 0.124 0.876 4 C 0.300 3.700 5 O -0.406 6.406 6 N -0.381 5.381 7 C -0.003 4.003 8 C -0.167 4.167 9 C -0.068 4.068 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.226 3.774 13 O -0.468 6.468 14 N -0.200 5.200 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.107 4.107 24 C -0.155 4.155 25 C -0.352 4.352 26 S 0.357 5.643 27 C -0.309 4.309 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.168 0.832 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.157 0.843 44 H 0.181 0.819 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.617 -1.554 -33.706 33.747 hybrid contribution -0.620 0.724 1.848 2.079 sum -1.237 -0.830 -31.858 31.893 Atomic orbital electron populations 1.21808 0.91856 1.03105 1.03064 1.19986 0.97551 1.00008 0.89897 0.87601 1.20497 0.80280 0.84745 0.84433 1.90731 1.37183 1.26030 1.86631 1.45999 1.54071 1.32368 1.05631 1.21326 0.99622 0.96276 0.83093 1.21741 1.01390 1.00919 0.92657 1.21827 1.00695 0.94921 0.89343 1.60058 1.17438 1.52792 0.99886 1.21672 1.01057 0.95483 0.90012 1.19811 0.86014 0.87507 0.84081 1.90517 1.42095 1.28373 1.85845 1.41874 1.46092 1.27772 1.04292 1.19760 1.29084 1.10651 0.83425 0.87851 1.25265 0.96943 0.96593 0.99134 1.69620 1.37120 1.23564 1.23980 0.85799 0.78523 0.79318 0.80692 1.19205 1.20772 1.20736 1.18307 1.01381 0.94083 0.96884 1.20028 0.99954 1.01331 0.94233 1.25513 1.08386 0.96846 1.04491 1.84292 1.47761 1.13152 1.19112 1.25357 1.06470 0.98954 1.00112 0.91895 0.91541 0.91032 0.76420 0.91500 0.91245 0.90114 0.91256 0.95272 0.90781 0.83206 0.93814 0.89546 0.77442 0.91911 0.84291 0.81912 0.82184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.92 37.16 0.33 -0.34 16 2 C -0.05 -0.34 2.97 -92.92 -0.28 -0.61 16 3 H 0.11 0.51 8.03 -51.93 -0.42 0.09 16 4 C 0.52 4.85 7.05 -10.99 -0.08 4.78 16 5 O -0.53 -7.19 15.22 5.56 0.08 -7.10 16 6 N -0.73 -5.57 5.45 -60.30 -0.33 -5.89 16 7 C 0.12 1.07 5.67 -4.04 -0.02 1.05 16 8 C -0.13 -1.16 5.59 -26.73 -0.15 -1.31 16 9 C 0.06 0.71 5.68 -3.83 -0.02 0.69 16 10 N -0.67 -10.46 6.13 -115.07 -0.70 -11.17 16 11 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 12 C 0.44 10.39 7.82 -10.99 -0.09 10.30 16 13 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 14 N -0.56 -14.30 5.29 -10.97 -0.06 -14.36 16 15 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 16 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 19 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.09 -0.78 4.29 -106.25 -0.46 -1.23 16 24 C -0.12 -0.93 9.92 -41.21 -0.41 -1.34 16 25 C -0.22 -1.55 11.23 29.04 0.33 -1.22 16 26 S 0.09 0.73 23.34 -107.50 -2.51 -1.78 16 27 C -0.17 -1.53 9.25 29.03 0.27 -1.26 16 28 H 0.06 0.35 7.76 -51.93 -0.40 -0.05 16 29 H 0.07 0.23 7.56 -51.93 -0.39 -0.16 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.40 2.05 7.89 -40.82 -0.32 1.73 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.35 5.56 8.43 -39.29 -0.33 5.22 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.16 1.38 7.96 -52.48 -0.42 0.96 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -34.18 395.26 -9.38 -43.56 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -6.77 Total: 12.01 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.84 Total: 2.34 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.37 Total: -55.23 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.83 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.18 -9.38 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166497561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.676 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds