Wall clock time and date at job start Sat Apr 11 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46986 * 2 1 4 4 C 1.50698 * 109.46852 * 239.99834 * 2 1 3 5 5 O 1.21279 * 120.00358 * 240.00007 * 4 2 1 6 6 N 1.34784 * 119.99758 * 60.00403 * 4 2 1 7 7 C 1.46499 * 119.99579 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47132 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47288 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.47016 * 179.97438 * 9 8 7 11 11 C 1.46894 * 111.00184 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47571 * 180.02562 * 11 10 9 13 13 O 1.21290 * 119.99326 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00395 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00290 * 179.97438 * 14 12 11 16 16 H 1.08001 * 119.99546 * 359.97438 * 15 14 12 17 17 C 1.38944 * 120.00097 * 179.97438 * 15 14 12 18 18 N 1.31418 * 120.00058 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00267 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46978 * 89.99816 * 19 17 15 21 21 H 1.48502 * 109.47367 * 210.00053 * 19 17 15 22 22 H 1.48506 * 109.46606 * 330.00180 * 19 17 15 23 23 C 1.50697 * 109.47067 * 120.00068 * 2 1 3 24 24 C 1.38421 * 122.53935 * 239.99612 * 23 2 1 25 25 C 1.33388 * 114.92066 * 179.72463 * 24 23 2 26 26 S 1.75885 * 109.59458 * 0.27968 * 25 24 23 27 27 C 1.33395 * 122.53872 * 60.25672 * 23 2 1 28 28 H 1.09003 * 109.47084 * 59.99871 * 1 2 3 29 29 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47292 * 299.99760 * 1 2 3 31 31 H 0.96991 * 120.00035 * 359.97438 * 6 4 2 32 32 H 1.09007 * 109.47405 * 299.99885 * 7 6 4 33 33 H 1.08995 * 109.47353 * 59.99699 * 7 6 4 34 34 H 1.09001 * 109.46483 * 300.00419 * 8 7 6 35 35 H 1.08996 * 109.46715 * 59.99642 * 8 7 6 36 36 H 1.08998 * 109.47020 * 299.99942 * 9 8 7 37 37 H 1.08995 * 109.46820 * 59.99940 * 9 8 7 38 38 H 1.00908 * 110.99831 * 56.04814 * 10 9 8 39 39 H 1.09005 * 109.47490 * 300.00720 * 11 10 9 40 40 H 1.09001 * 109.47011 * 59.99939 * 11 10 9 41 41 H 0.97004 * 119.99796 * 359.97438 * 14 12 11 42 42 H 0.96998 * 120.00045 * 179.97438 * 18 17 15 43 43 H 1.08002 * 122.54201 * 0.02562 * 24 23 2 44 44 H 1.08004 * 125.20514 * 180.24987 * 25 24 23 45 45 H 1.07998 * 125.20353 * 359.97100 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1954 -0.9402 -3.6507 8 6 1.6848 -0.2194 -4.9000 9 6 2.1947 -0.9407 -6.1493 10 7 1.7040 -0.2490 -7.3487 11 6 2.1753 -0.9148 -8.5703 12 6 1.6536 -0.1783 -9.7772 13 8 0.9572 0.8044 -9.6336 14 7 1.9600 -0.6120 -11.0158 15 6 1.4850 0.0577 -12.1137 16 1 0.8649 0.9327 -11.9859 17 6 1.8013 -0.3892 -13.3907 18 7 1.3455 0.2525 -14.4431 19 14 2.8744 -1.9022 -13.6118 20 1 2.0168 -3.1131 -13.6697 21 1 3.6463 -1.7814 -14.8746 22 1 3.8132 -2.0147 -12.4666 23 6 2.0323 -0.7104 1.2304 24 6 2.8306 -0.0890 2.1752 25 6 3.1832 -0.8579 3.2065 26 16 2.4955 -2.4644 3.0068 27 6 1.7455 -1.9872 1.4891 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.1488 0.5385 -2.5436 32 1 3.2855 -0.9399 -3.6506 33 1 1.8325 -1.9680 -3.6509 34 1 0.5948 -0.2202 -4.8998 35 1 2.0474 0.8085 -4.9000 36 1 3.2847 -0.9404 -6.1496 37 1 1.8317 -1.9685 -6.1489 38 1 1.9728 0.7236 -7.3406 39 1 3.2652 -0.9136 -8.5874 40 1 1.8129 -1.9427 -8.5868 41 1 2.5166 -1.3981 -11.1306 42 1 1.5666 -0.0592 -15.3346 43 1 3.1404 0.9418 2.0866 44 1 3.7975 -0.5425 4.0370 45 1 1.1412 -2.6285 0.8645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166497562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:48 Heat of formation + Delta-G solvation = -42.013964 kcal Electronic energy + Delta-G solvation = -25109.056408 eV Core-core repulsion = 21253.077631 eV Total energy + Delta-G solvation = -3855.978777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.53963 -38.55225 -38.22756 -36.59010 -34.95734 -33.94969 -33.60927 -31.71552 -31.25767 -29.13985 -27.35779 -25.84452 -24.91820 -23.56105 -22.71912 -21.80251 -20.56102 -19.39390 -19.02279 -18.33765 -18.17277 -17.28162 -16.55567 -16.30020 -15.90114 -15.53373 -15.24182 -14.97018 -14.68657 -14.42099 -14.09403 -13.98797 -13.62568 -13.43738 -13.21823 -13.09115 -12.95968 -12.73338 -12.64201 -12.38202 -12.23799 -12.04292 -11.95711 -11.84092 -11.70725 -11.55415 -11.20182 -11.05357 -11.03517 -10.60444 -10.06283 -9.98588 -9.58566 -9.38142 -9.09655 -8.73529 -8.62027 -8.21772 -8.16941 -6.32281 -3.83849 0.70407 1.33679 1.65843 2.25685 2.33867 2.93259 3.01784 3.06405 3.14512 3.72447 4.04699 4.09870 4.23045 4.30838 4.57871 4.70702 4.75062 4.78015 4.81031 4.95060 4.96958 5.03717 5.20500 5.21557 5.25540 5.30334 5.33893 5.43193 5.53894 5.60432 5.61792 5.67509 5.78832 5.88024 5.92091 5.97428 6.01718 6.10853 6.12693 7.04458 7.15864 7.52860 7.57133 7.90868 8.13140 8.58491 8.93632 9.41179 9.81217 10.80801 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036868 B = 0.001341 C = 0.001312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.278020 B =20869.359246 C =21336.414187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 H 0.106 0.894 4 C 0.515 3.485 5 O -0.530 6.530 6 N -0.729 5.729 7 C 0.121 3.879 8 C -0.129 4.129 9 C 0.062 3.938 10 N -0.669 5.669 11 C 0.048 3.952 12 C 0.449 3.551 13 O -0.565 6.565 14 N -0.590 5.590 15 C -0.306 4.306 16 H 0.120 0.880 17 C 0.042 3.958 18 N -0.881 5.881 19 Si 0.880 3.120 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.270 1.270 23 C -0.095 4.095 24 C -0.125 4.125 25 C -0.217 4.217 26 S 0.094 5.906 27 C -0.173 4.173 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.402 0.598 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.350 0.650 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.371 0.629 42 H 0.273 0.727 43 H 0.139 0.861 44 H 0.163 0.837 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 -3.404 35.284 35.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 H 0.124 0.876 4 C 0.301 3.699 5 O -0.406 6.406 6 N -0.381 5.381 7 C -0.003 4.003 8 C -0.168 4.168 9 C -0.068 4.068 10 N -0.302 5.302 11 C -0.085 4.085 12 C 0.235 3.765 13 O -0.447 6.447 14 N -0.230 5.230 15 C -0.435 4.435 16 H 0.137 0.863 17 C -0.161 4.161 18 N -0.521 5.521 19 Si 0.706 3.294 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.107 4.107 24 C -0.156 4.156 25 C -0.353 4.353 26 S 0.357 5.643 27 C -0.309 4.309 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.170 0.830 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.157 0.843 44 H 0.181 0.819 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.377 -5.118 36.070 36.509 hybrid contribution 1.608 0.707 -1.373 2.229 sum 3.985 -4.411 34.698 35.203 Atomic orbital electron populations 1.21811 0.91798 1.03152 1.03096 1.19983 0.97595 0.99972 0.89874 0.87627 1.20507 0.80253 0.84733 0.84435 1.90731 1.37212 1.26015 1.86638 1.45996 1.54063 1.32413 1.05617 1.21319 0.99343 0.96527 0.83117 1.21743 1.02629 0.99780 0.92600 1.21830 0.96933 0.98690 0.89315 1.60053 1.63526 1.06802 0.99789 1.21706 0.97559 0.99103 0.90129 1.19705 0.85728 0.87427 0.83625 1.90560 1.40631 1.28018 1.85529 1.42206 1.47197 1.27720 1.05840 1.19436 1.29750 1.11805 0.82484 0.86276 1.25037 0.97853 0.98076 0.95137 1.69623 1.44545 1.39708 0.98227 0.86669 0.80776 0.83354 0.78563 1.19575 1.20173 1.19530 1.18308 1.01379 0.94086 0.96914 1.20024 0.99990 1.01332 0.94205 1.25516 1.08447 0.96881 1.04412 1.84296 1.47949 1.13130 1.18902 1.25364 1.06442 0.98962 1.00112 0.91502 0.91861 0.91022 0.76389 0.91503 0.91278 0.90043 0.91188 0.95218 0.90764 0.83016 0.93707 0.89411 0.79664 0.91601 0.84305 0.81910 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.92 37.16 0.33 -0.33 16 2 C -0.05 -0.32 2.97 -92.93 -0.28 -0.60 16 3 H 0.11 0.48 8.03 -51.93 -0.42 0.07 16 4 C 0.52 4.71 7.05 -10.98 -0.08 4.63 16 5 O -0.53 -7.03 15.22 5.56 0.08 -6.94 16 6 N -0.73 -5.32 5.45 -60.29 -0.33 -5.65 16 7 C 0.12 1.02 5.67 -4.04 -0.02 0.99 16 8 C -0.13 -1.09 5.59 -26.73 -0.15 -1.24 16 9 C 0.06 0.67 5.69 -3.82 -0.02 0.64 16 10 N -0.67 -9.88 6.13 -115.06 -0.70 -10.58 16 11 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 12 C 0.45 10.13 7.82 -10.99 -0.09 10.05 16 13 O -0.57 -15.08 15.78 5.55 0.09 -14.99 16 14 N -0.59 -14.01 5.09 -10.97 -0.06 -14.07 16 15 C -0.31 -8.65 10.16 -14.94 -0.15 -8.80 16 16 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 17 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 18 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 19 Si 0.88 19.30 27.74 -169.99 -4.71 14.59 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 23 C -0.09 -0.76 4.29 -106.25 -0.46 -1.22 16 24 C -0.12 -0.91 9.92 -41.21 -0.41 -1.32 16 25 C -0.22 -1.51 11.23 29.04 0.33 -1.18 16 26 S 0.09 0.71 23.34 -107.50 -2.51 -1.80 16 27 C -0.17 -1.49 9.25 29.04 0.27 -1.23 16 28 H 0.07 0.23 7.56 -51.93 -0.39 -0.17 16 29 H 0.06 0.35 7.76 -51.93 -0.40 -0.06 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.40 1.93 7.89 -40.82 -0.32 1.61 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.35 5.31 8.43 -39.29 -0.33 4.98 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.16 1.35 7.95 -52.49 -0.42 0.93 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -35.37 392.14 -9.03 -44.40 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -6.73 Total: 11.84 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.85 Total: 2.19 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.31 Total: -55.20 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.17 Total: -21.93 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.59 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.51 Total: -1.80 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.37 -9.03 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166497562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.390 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds