Wall clock time and date at job start Sat Apr 11 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47068 * 2 1 4 4 C 1.52997 * 109.46958 * 240.00024 * 2 1 3 5 5 C 1.52998 * 109.47057 * 175.00080 * 4 2 1 6 6 C 1.50707 * 109.46956 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00231 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99597 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00290 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99522 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47253 * 59.99762 * 10 8 6 12 12 H 1.48500 * 109.46897 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46988 * 299.99600 * 10 8 6 14 14 N 1.46897 * 109.47030 * 119.99904 * 2 1 3 15 15 C 1.46897 * 111.00172 * 262.57697 * 14 2 1 16 16 P 1.82303 * 110.73026 * 182.26500 * 15 14 2 17 17 O 1.48003 * 109.47300 * 165.70239 * 16 15 14 18 18 O 1.61001 * 109.47004 * 285.70149 * 16 15 14 19 19 O 1.60998 * 109.47153 * 45.70112 * 16 15 14 20 20 C 1.54343 * 110.82190 * 58.86235 * 15 14 2 21 21 C 1.51906 * 104.91340 * 268.05542 * 20 15 14 22 22 C 1.38492 * 130.34383 * 162.82024 * 21 20 15 23 23 C 1.38102 * 120.21705 * 179.97438 * 22 21 20 24 24 C 1.38264 * 119.93129 * 359.97438 * 23 22 21 25 25 C 1.38095 * 119.93468 * 359.97438 * 24 23 22 26 26 C 1.38220 * 109.80464 * 342.78910 * 21 20 15 27 27 C 1.51367 * 109.75825 * 0.02969 * 26 21 20 28 28 H 1.09000 * 109.46959 * 305.82448 * 1 2 3 29 29 H 1.09001 * 109.47052 * 65.82006 * 1 2 3 30 30 H 1.09000 * 109.47313 * 185.82693 * 1 2 3 31 31 H 1.09004 * 109.47241 * 295.00214 * 4 2 1 32 32 H 1.09000 * 109.46952 * 55.00098 * 4 2 1 33 33 H 1.09002 * 109.47175 * 299.99619 * 5 4 2 34 34 H 1.09000 * 109.47225 * 60.00185 * 5 4 2 35 35 H 0.97001 * 119.99914 * 179.97438 * 9 8 6 36 36 H 1.00903 * 111.00372 * 26.53626 * 14 2 1 37 37 H 0.96703 * 113.99661 * 60.00519 * 18 16 15 38 38 H 0.96696 * 114.00246 * 180.02562 * 19 16 15 39 39 H 1.09003 * 110.30676 * 27.04483 * 20 15 14 40 40 H 1.09002 * 110.30970 * 149.19755 * 20 15 14 41 41 H 1.07996 * 119.89404 * 359.96663 * 22 21 20 42 42 H 1.08001 * 120.03423 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.02675 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.89112 * 179.97438 * 25 24 23 45 45 H 1.09002 * 110.30439 * 258.26140 * 27 26 21 46 46 H 1.08999 * 110.30432 * 136.11338 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3243 -2.5439 7 1 3.3687 -1.8047 -3.2130 8 6 5.4185 -1.3614 -2.8151 9 7 6.2690 -0.7760 -2.0005 10 14 6.0411 -2.2421 -4.3403 11 1 5.4495 -1.6157 -5.5497 12 1 7.5211 -2.1375 -4.4028 13 1 5.6476 -3.6727 -4.2811 14 7 2.0197 -0.6925 1.1994 15 6 2.3622 0.2666 2.2581 16 15 3.0314 -0.5958 3.7182 17 8 3.6801 0.3855 4.6164 18 8 1.8334 -1.3315 4.5028 19 8 4.1148 -1.6891 3.2460 20 6 1.1362 1.1225 2.6406 21 6 1.2264 2.3529 1.7543 22 6 0.2655 3.2954 1.4283 23 6 0.5797 4.3471 0.5901 24 6 1.8576 4.4604 0.0746 25 6 2.8174 3.5221 0.3994 26 6 2.5038 2.4659 1.2386 27 6 3.3607 1.3230 1.7393 28 1 -0.3633 0.6015 0.8333 29 1 -0.3633 0.4209 -0.9375 30 1 -0.3634 -1.0223 0.1043 31 1 1.7516 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1369 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0729 -0.4260 35 1 7.2197 -0.8025 -2.1911 36 1 1.3457 -1.3679 1.5276 37 1 1.3626 -1.9898 3.9736 38 1 4.5130 -2.1876 3.9726 39 1 0.2152 0.5749 2.4404 40 1 1.1867 1.4075 3.6915 41 1 -0.7328 3.2078 1.8308 42 1 -0.1721 5.0802 0.3375 43 1 2.1049 5.2819 -0.5813 44 1 3.8153 3.6110 -0.0040 45 1 4.0076 1.6616 2.5487 46 1 3.9568 0.9121 0.9245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:51 Heat of formation + Delta-G solvation = -170.043258 kcal Electronic energy + Delta-G solvation = -29004.988201 eV Core-core repulsion = 25164.406884 eV Total energy + Delta-G solvation = -3840.581318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75415 -37.47516 -36.65177 -35.82145 -34.61288 -33.02403 -32.75842 -31.46516 -30.92390 -29.29905 -27.51928 -27.11567 -25.03747 -22.66583 -21.33924 -20.99416 -20.83139 -19.74866 -19.19186 -18.56116 -16.87187 -16.26543 -16.07249 -15.72331 -15.28105 -15.14398 -14.63029 -14.55876 -14.40739 -14.17849 -13.76431 -13.25695 -13.16704 -13.04986 -12.87072 -12.73657 -12.55574 -12.48583 -12.24616 -12.14831 -11.95541 -11.70154 -11.42702 -11.20421 -11.17077 -11.01735 -10.83868 -10.72049 -10.50432 -10.39628 -10.34972 -9.85286 -9.67815 -9.28422 -8.96179 -8.75145 -8.48918 -8.27084 -8.15570 -5.91400 -3.92804 1.40351 1.45521 1.54484 3.35639 3.40294 3.42449 3.73710 3.88022 3.97741 4.32969 4.45267 4.51157 4.85024 5.01715 5.03547 5.08245 5.16424 5.22910 5.29497 5.37714 5.43974 5.48126 5.55452 5.60084 5.73397 5.87409 5.94056 6.08207 6.11523 6.15331 6.17095 6.29818 6.32023 6.47648 6.52905 6.58542 6.73066 6.75731 6.91883 7.04183 7.06800 7.25304 7.38220 7.62813 7.79159 8.01403 8.16071 8.53716 9.14737 9.69850 11.19514 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.004894 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.733137 B = 5720.333893 C = 7235.231021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.096 0.904 4 C -0.097 4.097 5 C 0.032 3.968 6 C -0.521 4.521 7 H 0.049 0.951 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.887 3.113 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.635 5.635 15 C -0.483 4.483 16 P 2.376 2.624 17 O -1.004 7.004 18 O -0.855 6.855 19 O -0.851 6.851 20 C -0.101 4.101 21 C -0.094 4.094 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.116 4.116 25 C -0.104 4.104 26 C -0.071 4.071 27 C -0.070 4.070 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.005 0.995 34 H 0.033 0.967 35 H 0.259 0.741 36 H 0.323 0.677 37 H 0.422 0.578 38 H 0.428 0.572 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.103 0.897 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.400 1.887 13.017 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.042 4.042 3 H 0.113 0.887 4 C -0.135 4.135 5 C -0.005 4.005 6 C -0.559 4.559 7 H 0.067 0.933 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.715 3.285 11 H -0.205 1.205 12 H -0.213 1.213 13 H -0.204 1.204 14 N -0.265 5.265 15 C -0.565 4.565 16 P 2.591 2.409 17 O -1.105 7.105 18 O -0.770 6.770 19 O -0.770 6.770 20 C -0.139 4.139 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.071 4.071 27 C -0.106 4.106 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.023 0.977 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.140 0.860 37 H 0.276 0.724 38 H 0.284 0.716 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.121 0.879 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.850 2.825 11.995 17.096 hybrid contribution -1.100 -0.496 -1.546 1.961 sum -12.949 2.329 10.449 16.802 Atomic orbital electron populations 1.22638 0.98095 1.01008 1.02117 1.22112 0.91470 1.00058 0.90527 0.88664 1.21633 1.00780 0.98206 0.92857 1.18992 0.88107 0.96270 0.97159 1.21263 0.91838 1.34312 1.08507 0.93311 1.24976 0.97087 0.95719 0.96453 1.69950 1.02254 1.44096 1.36872 0.86747 0.77628 0.80262 0.83818 1.20534 1.21321 1.20387 1.61000 1.47300 1.14096 1.04118 1.33496 1.03734 1.05159 1.14109 0.89897 0.49954 0.51998 0.49074 1.95169 1.78337 1.66914 1.70097 1.88087 1.64609 1.63527 1.60775 1.87868 1.69720 1.67281 1.52090 1.21845 0.97763 0.94650 0.99638 1.20381 0.94455 0.96232 0.98359 1.20486 0.98407 0.94601 0.99234 1.20944 0.96764 0.98214 0.98523 1.21024 0.93310 0.99014 1.00016 1.20722 1.00197 0.93775 0.97501 1.20440 0.94925 0.95577 0.96167 1.21067 0.95923 0.90508 1.03134 0.92892 0.92256 0.93006 0.93575 0.93805 0.97706 0.94842 0.93097 0.85956 0.72382 0.71579 0.89878 0.89392 0.86786 0.86173 0.85913 0.85685 0.87883 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 8.59 37.16 0.32 -2.15 16 2 C 0.07 1.12 1.74 -67.71 -0.12 1.00 16 3 H 0.10 1.76 3.70 -51.93 -0.19 1.57 16 4 C -0.10 -2.02 4.83 -26.73 -0.13 -2.15 16 5 C 0.03 0.82 4.19 -27.88 -0.12 0.71 16 6 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 7 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 10 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 N -0.64 -9.11 5.50 -94.85 -0.52 -9.63 16 15 C -0.48 -6.59 1.33 -66.31 -0.09 -6.67 16 16 P 2.38 26.51 5.65 -42.89 -0.24 26.26 16 17 O -1.00 -16.23 17.70 -9.10 -0.16 -16.39 16 18 O -0.85 -6.11 14.03 -11.30 -0.16 -6.27 16 19 O -0.85 -9.15 14.06 -11.30 -0.16 -9.31 16 20 C -0.10 -1.26 5.33 -26.58 -0.14 -1.40 16 21 C -0.09 -1.37 4.07 -103.94 -0.42 -1.79 16 22 C -0.11 -1.43 9.92 -39.54 -0.39 -1.83 16 23 C -0.13 -1.60 10.05 -39.62 -0.40 -2.00 16 24 C -0.12 -1.58 10.05 -39.62 -0.40 -1.98 16 25 C -0.10 -1.66 10.04 -39.54 -0.40 -2.05 16 26 C -0.07 -1.17 4.01 -104.21 -0.42 -1.58 16 27 C -0.07 -1.18 5.40 -26.85 -0.15 -1.33 16 28 H 0.05 0.66 4.72 -51.93 -0.25 0.41 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.63 8.01 -51.93 -0.42 0.21 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.00 0.13 7.97 -51.93 -0.41 -0.28 16 34 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.32 3.43 8.28 -39.29 -0.33 3.10 16 37 H 0.42 0.81 9.11 45.56 0.42 1.22 16 38 H 0.43 2.40 9.11 45.56 0.42 2.81 16 39 H 0.08 0.88 5.92 -51.93 -0.31 0.57 16 40 H 0.09 1.05 7.87 -51.93 -0.41 0.64 16 41 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 45 H 0.10 1.73 7.16 -51.93 -0.37 1.36 16 46 H 0.11 2.27 7.10 -51.93 -0.37 1.91 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -39.46 374.60 -8.26 -47.72 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.12 Total: 8.24 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: -3.26 Total: -36.96 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.22 Total: -35.96 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.48 Total: -31.97 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 15 Polarization: 26.51 SS G_CDS: -0.24 Total: 26.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.46 -8.26 -47.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.321 kcal (2) G-P(sol) polarization free energy of solvation -39.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds