Wall clock time and date at job start Sat Apr 11 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46533 * 2 1 4 4 C 1.53001 * 109.46941 * 119.99334 * 2 1 3 5 5 C 1.53001 * 109.46904 * 185.00249 * 4 2 1 6 6 C 1.50699 * 109.47438 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99548 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00186 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00210 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00015 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47307 * 90.00246 * 10 8 6 12 12 H 1.48504 * 109.46914 * 210.00308 * 10 8 6 13 13 H 1.48502 * 109.47309 * 329.99794 * 10 8 6 14 14 N 1.46900 * 109.47266 * 239.99746 * 2 1 3 15 15 C 1.46898 * 110.99951 * 96.72137 * 14 2 1 16 16 P 1.82301 * 110.72724 * 174.78349 * 15 14 2 17 17 O 1.47996 * 109.47048 * 165.70344 * 16 15 14 18 18 O 1.61005 * 109.47120 * 285.70181 * 16 15 14 19 19 O 1.61005 * 109.46922 * 45.70035 * 16 15 14 20 20 C 1.54349 * 110.81948 * 51.37891 * 15 14 2 21 21 C 1.51890 * 104.91569 * 268.05004 * 20 15 14 22 22 C 1.38497 * 130.34458 * 162.82520 * 21 20 15 23 23 C 1.38105 * 120.21437 * 179.97438 * 22 21 20 24 24 C 1.38248 * 119.93722 * 359.97438 * 23 22 21 25 25 C 1.38106 * 119.93444 * 359.97438 * 24 23 22 26 26 C 1.38218 * 109.80661 * 342.79862 * 21 20 15 27 27 C 1.51374 * 109.76150 * 0.02562 * 26 21 20 28 28 H 1.08996 * 109.47526 * 53.82630 * 1 2 3 29 29 H 1.09008 * 109.47051 * 173.82549 * 1 2 3 30 30 H 1.09006 * 109.47324 * 293.81831 * 1 2 3 31 31 H 1.08998 * 109.47397 * 65.00709 * 4 2 1 32 32 H 1.08995 * 109.47363 * 304.99679 * 4 2 1 33 33 H 1.09006 * 109.47314 * 60.00176 * 5 4 2 34 34 H 1.08997 * 109.47295 * 300.00527 * 5 4 2 35 35 H 0.96996 * 120.00807 * 179.97438 * 9 8 6 36 36 H 1.00896 * 110.99572 * 332.76935 * 14 2 1 37 37 H 0.96703 * 113.99857 * 179.97438 * 18 16 15 38 38 H 0.96692 * 113.99972 * 299.99880 * 19 16 15 39 39 H 1.08995 * 110.30449 * 27.04780 * 20 15 14 40 40 H 1.09000 * 110.29684 * 149.19484 * 20 15 14 41 41 H 1.08000 * 119.88994 * 359.96494 * 22 21 20 42 42 H 1.07998 * 120.02889 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.03579 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.88903 * 179.97438 * 25 24 23 45 45 H 1.09006 * 110.30066 * 258.26922 * 27 26 21 46 46 H 1.08990 * 110.30591 * 136.11403 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0672 -1.3239 2.5440 7 1 3.3687 -1.8042 3.2132 8 6 5.4184 -1.3600 2.8157 9 7 5.8569 -1.9798 3.8895 10 14 6.6264 -0.5285 1.6586 11 1 6.8310 0.8792 2.0846 12 1 7.9237 -1.2503 1.6953 13 1 6.0850 -0.5537 0.2761 14 7 2.0197 -0.6925 -1.1994 15 6 2.3465 0.2655 -2.2639 16 15 3.0965 -0.5862 -3.6906 17 8 3.0978 0.3195 -4.8610 18 8 4.6100 -1.0023 -3.3323 19 8 2.2439 -1.9078 -4.0355 20 6 3.2793 1.3758 -1.7353 21 6 2.3474 2.4851 -1.2792 22 6 2.5818 3.5682 -0.4484 23 6 1.5673 4.4628 -0.1699 24 6 0.3134 4.2779 -0.7220 25 6 0.0779 3.1991 -1.5514 26 6 1.0936 2.2999 -1.8308 27 6 1.0929 1.0564 -2.6940 28 1 -0.3634 0.6065 -0.8295 29 1 -0.3633 -1.0218 -0.1105 30 1 -0.3634 0.4150 0.9402 31 1 1.7517 -1.7714 1.2058 32 1 1.6054 -0.2615 2.1370 33 1 3.8531 0.4372 1.3574 34 1 3.9994 -1.0726 0.4261 35 1 6.8075 -2.0056 4.0806 36 1 1.3505 -1.3759 -1.5208 37 1 5.0715 -1.4614 -4.0475 38 1 2.2003 -2.5476 -3.3119 39 1 3.8707 1.0060 -0.8978 40 1 3.9321 1.7323 -2.5320 41 1 3.5612 3.7135 -0.0170 42 1 1.7533 5.3061 0.4787 43 1 -0.4813 4.9763 -0.5048 44 1 -0.9020 3.0550 -1.9820 45 1 1.1598 1.3274 -3.7477 46 1 0.1934 0.4689 -2.5102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:54 Heat of formation + Delta-G solvation = -170.475408 kcal Electronic energy + Delta-G solvation = -29148.940128 eV Core-core repulsion = 25308.340071 eV Total energy + Delta-G solvation = -3840.600057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89944 -37.61617 -36.69264 -35.96082 -34.77894 -33.12209 -32.82949 -31.62457 -31.14364 -29.70490 -27.61217 -27.31403 -25.28581 -22.75141 -21.25900 -21.12509 -20.82800 -19.89203 -19.19607 -18.74039 -17.03722 -16.63031 -16.30049 -15.86775 -15.42753 -15.24794 -14.76645 -14.66235 -14.32486 -14.17850 -13.82171 -13.38417 -13.32665 -13.18392 -13.01819 -12.90236 -12.74430 -12.53274 -12.46833 -12.39470 -12.17553 -11.85067 -11.67855 -11.41465 -11.30943 -11.22550 -10.94414 -10.86628 -10.60261 -10.50902 -10.07855 -9.89490 -9.75277 -9.57205 -9.10576 -8.86786 -8.69557 -8.51005 -8.35008 -6.02158 -3.99167 1.28115 1.32298 1.45648 3.31593 3.39660 3.45993 3.63781 3.77091 3.79249 4.28612 4.36105 4.47817 4.69815 4.86914 4.92260 4.97035 5.02633 5.15999 5.22881 5.32942 5.37259 5.41998 5.47260 5.50219 5.55467 5.59678 5.77240 5.94860 6.01359 6.02980 6.05387 6.10261 6.15002 6.34089 6.35850 6.45312 6.54322 6.57532 6.77078 6.86506 6.93012 7.00159 7.19016 7.37935 7.50974 7.57901 7.84759 8.57226 9.03129 9.61397 11.11530 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.005631 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.355457 B = 4970.965616 C = 6384.709107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.066 3.934 3 H 0.095 0.905 4 C -0.088 4.088 5 C -0.004 4.004 6 C -0.518 4.518 7 H 0.067 0.933 8 C 0.065 3.935 9 N -0.907 5.907 10 Si 0.874 3.126 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.257 1.257 14 N -0.648 5.648 15 C -0.488 4.488 16 P 2.383 2.617 17 O -1.006 7.006 18 O -0.861 6.861 19 O -0.855 6.855 20 C -0.065 4.065 21 C -0.083 4.083 22 C -0.105 4.105 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.109 4.109 26 C -0.086 4.086 27 C -0.099 4.099 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.000 1.000 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.332 0.668 37 H 0.432 0.568 38 H 0.428 0.572 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 4.845 -16.362 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.043 4.043 3 H 0.112 0.888 4 C -0.127 4.127 5 C -0.042 4.042 6 C -0.556 4.556 7 H 0.085 0.915 8 C -0.135 4.135 9 N -0.547 5.547 10 Si 0.701 3.299 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.182 1.182 14 N -0.279 5.279 15 C -0.570 4.570 16 P 2.597 2.403 17 O -1.107 7.107 18 O -0.780 6.780 19 O -0.772 6.772 20 C -0.102 4.102 21 C -0.083 4.083 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.140 4.140 25 C -0.127 4.127 26 C -0.086 4.086 27 C -0.137 4.137 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.018 0.982 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.150 0.850 37 H 0.288 0.712 38 H 0.283 0.717 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.121 0.879 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.470 5.668 -15.336 18.894 hybrid contribution -0.388 0.420 0.399 0.697 sum -9.858 6.088 -14.937 18.904 Atomic orbital electron populations 1.22605 0.97596 1.01311 1.02332 1.22115 0.92094 0.99853 0.90210 0.88754 1.21461 0.98979 0.98957 0.93265 1.19475 0.91418 0.95639 0.97630 1.21210 0.92808 1.34135 1.07487 0.91452 1.25020 0.98419 0.95025 0.95038 1.69919 1.14508 1.43860 1.26386 0.86854 0.80628 0.79572 0.82803 1.20660 1.21485 1.18155 1.61096 1.48537 1.14052 1.04243 1.33526 1.04988 1.05280 1.13161 0.89668 0.48520 0.50999 0.51064 1.95170 1.89778 1.69553 1.56156 1.87799 1.51221 1.82251 1.56718 1.88027 1.84900 1.49726 1.54539 1.21086 0.95832 0.90663 1.02630 1.20497 0.95189 0.95660 0.96959 1.20685 0.99825 0.93934 0.97868 1.21017 0.93113 0.99268 1.00102 1.20977 0.97140 0.97795 0.98050 1.20527 0.98214 0.94662 0.99261 1.20314 0.94127 0.96298 0.97874 1.21710 0.96949 0.94333 1.00731 0.92642 0.92812 0.92142 0.92863 0.93022 0.98197 0.95245 0.92881 0.84981 0.71159 0.71726 0.87633 0.89190 0.85945 0.85832 0.86014 0.86542 0.87864 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.56 37.16 0.32 -2.06 16 2 C 0.07 1.02 1.71 -67.71 -0.12 0.91 16 3 H 0.09 1.61 3.73 -51.93 -0.19 1.42 16 4 C -0.09 -1.73 4.83 -26.73 -0.13 -1.86 16 5 C 0.00 -0.10 3.35 -27.88 -0.09 -0.20 16 6 C -0.52 -14.86 9.66 -34.44 -0.33 -15.20 16 7 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -28.26 13.96 55.43 0.77 -27.49 16 10 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 14 N -0.65 -8.44 5.49 -94.85 -0.52 -8.97 16 15 C -0.49 -6.17 1.32 -66.31 -0.09 -6.26 16 16 P 2.38 24.82 5.66 -42.89 -0.24 24.57 16 17 O -1.01 -14.88 17.70 -9.09 -0.16 -15.04 16 18 O -0.86 -8.36 14.03 -11.30 -0.16 -8.52 16 19 O -0.86 -6.22 14.06 -11.30 -0.16 -6.38 16 20 C -0.07 -0.99 5.40 -26.59 -0.14 -1.13 16 21 C -0.08 -1.25 3.95 -103.95 -0.41 -1.66 16 22 C -0.11 -1.51 10.04 -39.53 -0.40 -1.91 16 23 C -0.12 -1.47 10.05 -39.63 -0.40 -1.86 16 24 C -0.12 -1.43 10.05 -39.63 -0.40 -1.83 16 25 C -0.11 -1.34 9.72 -39.53 -0.38 -1.73 16 26 C -0.09 -1.18 4.00 -104.20 -0.42 -1.59 16 27 C -0.10 -1.22 5.31 -26.85 -0.14 -1.36 16 28 H 0.05 0.68 4.46 -51.93 -0.23 0.45 16 29 H 0.05 0.64 8.00 -51.92 -0.42 0.22 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.00 -0.01 7.36 -51.93 -0.38 -0.39 16 34 H 0.03 0.69 6.81 -51.93 -0.35 0.34 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.33 3.26 7.92 -39.29 -0.31 2.95 16 37 H 0.43 2.00 9.11 45.56 0.42 2.42 16 38 H 0.43 1.30 8.75 45.56 0.40 1.70 16 39 H 0.11 1.84 7.02 -51.93 -0.36 1.48 16 40 H 0.09 1.27 7.87 -51.93 -0.41 0.86 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.10 1.29 7.16 -51.93 -0.37 0.92 16 46 H 0.08 0.89 6.21 -51.93 -0.32 0.57 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -39.00 369.88 -7.88 -46.88 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.09 Total: 8.03 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: -3.23 Total: -35.91 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.25 Total: -36.45 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.48 Total: -29.94 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 15 Polarization: 24.82 SS G_CDS: -0.24 Total: 24.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.00 -7.88 -46.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.593 kcal (2) G-P(sol) polarization free energy of solvation -39.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds