Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34709 * 117.00295 * 2 1 4 4 O 1.21471 * 119.99634 * 0.02562 * 3 2 1 5 5 C 1.47726 * 120.00208 * 180.02562 * 3 2 1 6 6 C 1.39630 * 120.14728 * 179.97438 * 5 3 2 7 7 C 1.37945 * 119.84273 * 179.69851 * 6 5 3 8 8 C 1.38369 * 120.15305 * 0.26015 * 7 6 5 9 9 C 1.50703 * 119.84730 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46882 * 89.99974 * 9 8 7 11 11 H 1.09004 * 109.47362 * 54.99919 * 10 9 8 12 12 C 1.53004 * 109.46927 * 174.99815 * 10 9 8 13 13 N 1.46502 * 109.47271 * 294.99698 * 10 9 8 14 14 C 1.38230 * 120.00046 * 151.95012 * 13 10 9 15 15 C 1.38981 * 119.99813 * 3.39236 * 14 13 10 16 16 H 1.08000 * 120.00706 * 313.17604 * 15 14 13 17 17 C 1.40826 * 119.99846 * 133.17833 * 15 14 13 18 18 N 1.30332 * 119.99990 * 344.12729 * 17 15 14 19 19 Si 1.86800 * 120.00127 * 164.12540 * 17 15 14 20 20 H 1.48502 * 109.47151 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47103 * 119.99905 * 19 17 15 22 22 H 1.48500 * 109.47369 * 240.00094 * 19 17 15 23 23 C 1.41152 * 119.99928 * 183.39123 * 14 13 10 24 24 C 1.43199 * 119.99718 * 174.01800 * 23 14 13 25 25 N 9.21765 * 123.68509 * 59.43079 * 2 1 3 26 26 C 1.43195 * 119.99891 * 354.01963 * 23 14 13 27 27 N 8.55802 * 128.80392 * 24.21921 * 2 1 3 28 28 C 1.38364 * 120.30373 * 0.02562 * 8 7 6 29 29 C 1.37953 * 120.15160 * 0.02562 * 28 8 7 30 30 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47086 * 299.99986 * 1 2 3 32 32 H 1.09003 * 109.46915 * 60.00369 * 1 2 3 33 33 H 1.07999 * 120.07547 * 359.97438 * 6 5 3 34 34 H 1.08001 * 119.92147 * 180.27997 * 7 6 5 35 35 H 1.08997 * 109.46761 * 209.99496 * 9 8 7 36 36 H 1.08998 * 109.47326 * 329.99949 * 9 8 7 37 37 H 1.09002 * 109.46970 * 179.97438 * 12 10 9 38 38 H 1.08993 * 109.46999 * 300.00042 * 12 10 9 39 39 H 1.09000 * 109.46868 * 60.00354 * 12 10 9 40 40 H 0.97003 * 119.99712 * 331.95310 * 13 10 9 41 41 H 0.97005 * 120.00065 * 185.06360 * 18 17 15 42 42 H 1.07993 * 119.92898 * 180.02562 * 28 8 7 43 43 H 1.07995 * 120.07952 * 180.02562 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.1760 2.5200 -0.0011 7 6 5.5539 2.5849 0.0046 8 6 6.3045 1.4224 0.0055 9 6 7.8094 1.5013 0.0112 10 6 8.3133 1.5256 1.4557 11 1 7.9213 0.6613 1.9919 12 6 9.8426 1.4798 1.4632 13 7 7.8583 2.7544 2.1110 14 6 7.6602 2.7756 3.4789 15 6 7.9597 1.6532 4.2419 16 1 7.6257 0.6774 3.9214 17 6 8.6988 1.7882 5.4329 18 7 9.3618 2.8855 5.6676 19 14 8.7289 0.3948 6.6766 20 1 7.9019 -0.7328 6.1767 21 1 10.1273 -0.0656 6.8704 22 1 8.1818 0.8746 7.9711 23 6 7.1537 3.9371 4.1007 24 6 6.8277 3.9185 5.4950 25 7 6.5644 3.9008 6.6040 26 6 6.9659 5.1339 3.3373 27 7 6.8150 6.0822 2.7359 28 6 5.6796 0.1879 0.0001 29 6 4.3024 0.1084 -0.0068 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.5913 3.4280 -0.0015 34 1 6.0480 3.5452 0.0088 35 1 8.2207 0.6324 -0.5024 36 1 8.1276 2.4099 -0.4999 37 1 10.2016 1.4976 2.4922 38 1 10.1811 0.5657 0.9756 39 1 10.2346 2.3442 0.9270 40 1 7.6961 3.5531 1.5850 41 1 9.9294 2.9510 6.4515 42 1 6.2713 -0.7155 0.0012 43 1 3.8158 -0.8557 -0.0106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173712420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = -12.443893 kcal Electronic energy + Delta-G solvation = -28412.210076 eV Core-core repulsion = 24422.069603 eV Total energy + Delta-G solvation = -3990.140474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.62843 -39.28169 -37.66007 -36.51190 -35.56620 -34.70872 -33.79344 -32.68560 -31.21029 -30.98315 -28.46203 -28.14832 -26.85131 -26.47063 -23.17195 -22.73925 -21.61891 -20.83536 -20.51420 -18.32889 -18.09137 -17.21024 -17.12101 -16.45348 -16.22041 -15.59574 -15.40592 -15.13835 -14.70778 -14.49562 -13.74869 -13.64385 -13.49827 -13.36287 -13.14000 -12.83100 -12.64070 -12.33917 -12.30333 -12.29264 -12.01913 -11.93432 -11.77488 -11.68542 -11.46499 -11.31732 -11.16999 -11.07590 -11.01255 -10.95835 -10.70872 -10.64889 -10.59070 -10.53692 -10.06660 -9.72962 -9.12323 -8.98651 -8.78112 -7.10907 -6.45467 -5.10266 0.66225 1.37570 2.48604 2.57011 2.69839 3.01232 3.04189 3.15946 3.74747 3.77382 3.99589 4.04935 4.29071 4.55638 4.58736 4.66861 4.76184 4.80786 4.91161 4.93997 4.99763 5.16324 5.23007 5.32979 5.33901 5.45542 5.54944 5.60060 5.77884 5.82413 5.85997 5.90840 5.97876 6.07612 6.11639 6.23633 6.33889 6.38699 6.54511 6.64922 6.72093 6.81352 6.84342 7.16773 7.43403 7.64653 7.83972 8.30414 8.49736 8.67570 9.08461 9.51927 9.86687 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003505 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.113582 B = 7987.548080 C = 8166.028152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.510 3.490 4 O -0.508 6.508 5 C -0.138 4.138 6 C -0.046 4.046 7 C -0.118 4.118 8 C -0.033 4.033 9 C -0.100 4.100 10 C 0.161 3.839 11 H 0.090 0.910 12 C -0.161 4.161 13 N -0.730 5.730 14 C 0.457 3.543 15 C -0.492 4.492 16 H 0.098 0.902 17 C 0.100 3.900 18 N -0.749 5.749 19 Si 0.905 3.095 20 H -0.256 1.256 21 H -0.271 1.271 22 H -0.265 1.265 23 C -0.290 4.290 24 C 0.352 3.648 25 N -0.545 5.545 26 C 0.306 3.694 27 N -0.543 5.543 28 C -0.131 4.131 29 C -0.060 4.060 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.384 0.616 41 H 0.291 0.709 42 H 0.131 0.869 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 -12.602 -14.021 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.397 6.397 5 C -0.139 4.139 6 C -0.064 4.064 7 C -0.136 4.136 8 C -0.033 4.033 9 C -0.138 4.138 10 C 0.055 3.945 11 H 0.108 0.892 12 C -0.220 4.220 13 N -0.356 5.356 14 C 0.342 3.658 15 C -0.525 4.525 16 H 0.116 0.884 17 C -0.127 4.127 18 N -0.370 5.370 19 Si 0.729 3.271 20 H -0.180 1.180 21 H -0.196 1.196 22 H -0.189 1.189 23 C -0.310 4.310 24 C 0.044 3.956 25 N -0.228 5.228 26 C 0.000 4.000 27 N -0.227 5.227 28 C -0.149 4.149 29 C -0.078 4.078 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.218 0.782 41 H 0.103 0.897 42 H 0.149 0.851 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.403 -10.904 -13.141 17.634 hybrid contribution 0.023 -0.450 0.369 0.582 sum -4.380 -11.354 -12.772 17.641 Atomic orbital electron populations 1.23266 0.76136 1.03643 1.02649 1.86538 1.23444 1.32840 1.84487 1.21319 0.89316 0.81320 0.72489 1.90835 1.66848 1.36039 1.45960 1.19005 0.88547 0.95212 1.11098 1.21234 0.94701 0.96593 0.93913 1.21003 0.93058 0.98571 1.00928 1.20160 0.96053 0.93055 0.94017 1.21160 0.90623 1.03836 0.98166 1.20735 0.94050 0.89559 0.90151 0.89165 1.22182 0.95517 1.00562 1.03694 1.45236 1.71496 1.12192 1.06718 1.16986 0.78264 0.90516 0.80031 1.18975 1.33776 0.94594 1.05149 0.88399 1.25789 0.93380 0.96776 0.96793 1.69484 1.16516 1.25606 1.25400 0.86269 0.78964 0.80895 0.81009 1.17981 1.19633 1.18917 1.12640 1.40544 0.91233 0.86597 1.24498 0.88947 0.91130 0.91072 1.81114 1.19218 1.10288 1.12158 1.25379 0.90339 0.91870 0.92435 1.80931 1.18996 1.11326 1.11404 1.21005 0.94117 0.97542 1.02252 1.21369 0.93876 0.97607 0.94950 0.88040 0.91751 0.91939 0.84720 0.85256 0.89368 0.90340 0.90480 0.92860 0.93183 0.78228 0.89740 0.85096 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.14 9.82 -40.52 -0.40 -4.54 16 3 C 0.51 7.10 7.90 34.61 0.27 7.37 16 4 O -0.51 -8.32 16.14 -19.24 -0.31 -8.63 16 5 C -0.14 -1.82 5.87 -104.98 -0.62 -2.44 16 6 C -0.05 -0.63 9.60 -39.17 -0.38 -1.01 16 7 C -0.12 -1.50 9.13 -39.64 -0.36 -1.87 16 8 C -0.03 -0.37 4.96 -104.53 -0.52 -0.89 16 9 C -0.10 -1.00 4.90 -27.88 -0.14 -1.13 16 10 C 0.16 2.07 2.41 -67.93 -0.16 1.90 16 11 H 0.09 1.22 6.51 -51.93 -0.34 0.89 16 12 C -0.16 -1.99 9.51 37.16 0.35 -1.64 16 13 N -0.73 -12.00 4.51 -51.91 -0.23 -12.24 16 14 C 0.46 9.38 6.15 -83.60 -0.51 8.86 16 15 C -0.49 -10.21 7.22 -38.33 -0.28 -10.48 16 16 H 0.10 1.89 6.83 -52.49 -0.36 1.53 16 17 C 0.10 2.17 4.19 -17.21 -0.07 2.10 16 18 N -0.75 -17.29 11.46 55.59 0.64 -16.66 16 19 Si 0.91 17.36 29.60 -169.99 -5.03 12.33 16 20 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 21 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.29 -6.73 5.39 -104.94 -0.57 -7.30 16 24 C 0.35 8.97 11.97 -22.34 -0.27 8.70 16 25 N -0.55 -14.48 18.56 42.00 0.78 -13.70 16 26 C 0.31 7.06 14.09 -22.57 -0.32 6.75 16 27 N -0.54 -12.72 18.52 41.72 0.77 -11.95 16 28 C -0.13 -1.37 9.68 -39.64 -0.38 -1.75 16 29 C -0.06 -0.67 9.62 -39.17 -0.38 -1.04 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.13 1.88 7.65 -52.49 -0.40 1.48 16 34 H 0.13 1.62 7.64 -52.49 -0.40 1.22 16 35 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.08 1.17 7.91 -51.93 -0.41 0.76 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.38 6.26 6.86 -40.82 -0.28 5.98 16 41 H 0.29 6.38 8.29 -40.82 -0.34 6.04 16 42 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.13 1.24 7.61 -52.49 -0.40 0.84 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -29.17 387.29 -6.30 -35.48 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.10 Total: 6.56 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -3.25 Total: 7.51 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 1.95 Total: -54.55 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.71 Total: -13.17 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.17 -6.30 -35.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173712420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.031 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds