Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34717 * 117.00375 * 2 1 4 4 O 1.21474 * 119.99295 * 359.97438 * 3 2 1 5 5 C 1.47725 * 120.00352 * 180.02562 * 3 2 1 6 6 C 1.39629 * 120.14855 * 179.97438 * 5 3 2 7 7 C 1.37939 * 119.84593 * 180.02562 * 6 5 3 8 8 C 1.38363 * 120.15292 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.85019 * 179.97438 * 8 7 6 10 10 C 1.52991 * 109.47512 * 90.00471 * 9 8 7 11 11 H 1.09008 * 109.47028 * 305.00130 * 10 9 8 12 12 C 1.52994 * 109.47451 * 185.00321 * 10 9 8 13 13 N 1.46501 * 109.47544 * 64.99587 * 10 9 8 14 14 C 1.38223 * 120.00605 * 204.68895 * 13 10 9 15 15 C 1.38991 * 119.99834 * 5.26326 * 14 13 10 16 16 H 1.08000 * 120.00267 * 46.89137 * 15 14 13 17 17 C 1.40820 * 119.99791 * 226.89603 * 15 14 13 18 18 N 1.30334 * 120.00012 * 16.16373 * 17 15 14 19 19 Si 1.86795 * 119.99684 * 196.16709 * 17 15 14 20 20 H 1.48504 * 109.47354 * 89.99933 * 19 17 15 21 21 H 1.48499 * 109.47057 * 209.99629 * 19 17 15 22 22 H 1.48499 * 109.47296 * 329.99675 * 19 17 15 23 23 C 1.41148 * 120.00364 * 185.25759 * 14 13 10 24 24 C 1.43192 * 120.00428 * 186.34414 * 23 14 13 25 25 N 8.86020 * 130.58243 * 99.63397 * 2 1 3 26 26 C 1.43209 * 119.99799 * 6.34642 * 23 14 13 27 27 N 7.61707 * 146.23655 * 139.48086 * 2 1 3 28 28 C 1.38372 * 120.30207 * 0.23791 * 8 7 6 29 29 C 1.37946 * 120.14748 * 359.48143 * 28 8 7 30 30 H 1.09000 * 109.46725 * 299.99904 * 1 2 3 31 31 H 1.08994 * 109.47352 * 59.99666 * 1 2 3 32 32 H 1.08997 * 109.47201 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.07322 * 0.05407 * 6 5 3 34 34 H 1.08005 * 119.92207 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47042 * 329.99928 * 9 8 7 36 36 H 1.09007 * 109.46917 * 210.00551 * 9 8 7 37 37 H 1.09007 * 109.46864 * 299.99367 * 12 10 9 38 38 H 1.09005 * 109.47139 * 179.97438 * 12 10 9 39 39 H 1.08996 * 109.47318 * 59.99685 * 12 10 9 40 40 H 0.97008 * 119.99630 * 24.68856 * 13 10 9 41 41 H 0.96998 * 119.99922 * 184.93894 * 18 17 15 42 42 H 1.08000 * 119.92816 * 179.72210 * 28 8 7 43 43 H 1.08003 * 120.07547 * 180.25395 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.1760 2.5201 -0.0011 7 6 5.5539 2.5850 -0.0022 8 6 6.3044 1.4226 -0.0033 9 6 7.8093 1.5015 -0.0050 10 6 8.3204 1.5278 1.4368 11 1 7.8429 2.3456 1.9766 12 6 9.8365 1.7332 1.4369 13 7 7.9997 0.2573 2.0920 14 6 7.8804 0.1999 3.4679 15 6 7.9560 1.3655 4.2212 16 1 7.3933 2.2381 3.9240 17 6 8.7665 1.4087 5.3719 18 7 9.6763 0.4952 5.5629 19 14 8.5376 2.7753 6.6247 20 1 7.5437 2.3516 7.6435 21 1 9.8351 3.0612 7.2880 22 1 8.0521 3.9995 5.9386 23 6 7.6816 -1.0423 4.1079 24 6 7.4226 -1.0893 5.5154 25 7 7.2159 -1.1261 6.6342 26 6 7.7391 -2.2558 3.3495 27 7 7.7844 -3.2181 2.7504 28 6 5.6795 0.1880 -0.0082 29 6 4.3024 0.1086 -0.0013 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.5913 3.4281 -0.0002 34 1 6.0480 3.5454 -0.0022 35 1 8.1250 2.4093 -0.5191 36 1 8.2181 0.6318 -0.5196 37 1 10.3140 0.9153 0.8971 38 1 10.2005 1.7524 2.4642 39 1 10.0751 2.6785 0.9495 40 1 7.8710 -0.5437 1.5602 41 1 10.1856 0.4830 6.3884 42 1 6.2713 -0.7154 -0.0136 43 1 3.8158 -0.8556 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173712430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = -13.106229 kcal Electronic energy + Delta-G solvation = -28376.300723 eV Core-core repulsion = 24386.131528 eV Total energy + Delta-G solvation = -3990.169195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.64760 -39.30161 -37.67641 -36.52745 -35.57827 -34.71176 -33.83292 -32.70256 -31.17238 -31.04512 -28.50642 -28.10968 -26.85918 -26.48384 -23.19030 -22.75770 -21.66048 -20.76691 -20.55259 -18.32768 -18.13108 -17.26222 -17.06166 -16.46142 -16.25018 -15.62114 -15.43339 -15.12700 -14.78155 -14.48085 -13.77310 -13.65140 -13.48834 -13.40667 -13.08667 -12.84703 -12.65993 -12.37576 -12.31914 -12.29202 -12.02551 -11.95772 -11.78067 -11.66465 -11.41413 -11.34267 -11.17602 -11.07414 -11.05330 -10.96150 -10.72636 -10.66279 -10.62934 -10.53860 -10.07707 -9.73034 -9.12480 -9.01198 -8.80522 -7.12778 -6.47118 -5.10745 0.63567 1.34978 2.45861 2.56921 2.70296 3.01216 3.03052 3.16978 3.72317 3.78529 3.97956 4.03818 4.26127 4.54115 4.58569 4.66750 4.71972 4.80815 4.90379 4.92903 4.99998 5.15297 5.21014 5.30677 5.34334 5.43627 5.52579 5.59687 5.77172 5.80371 5.86352 5.91294 5.95699 6.08106 6.10777 6.23390 6.33714 6.36338 6.52403 6.63273 6.73676 6.81082 6.82265 7.14400 7.42204 7.62117 7.84012 8.30930 8.48532 8.65667 9.06680 9.48909 9.86176 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010221 B = 0.003504 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.863583 B = 7988.633744 C = 8253.497220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.512 3.488 4 O -0.512 6.512 5 C -0.139 4.139 6 C -0.051 4.051 7 C -0.129 4.129 8 C -0.032 4.032 9 C -0.100 4.100 10 C 0.162 3.838 11 H 0.090 0.910 12 C -0.161 4.161 13 N -0.730 5.730 14 C 0.461 3.539 15 C -0.493 4.493 16 H 0.097 0.903 17 C 0.103 3.897 18 N -0.750 5.750 19 Si 0.901 3.099 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.291 4.291 24 C 0.352 3.648 25 N -0.544 5.544 26 C 0.306 3.694 27 N -0.544 5.544 28 C -0.122 4.122 29 C -0.054 4.054 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.383 0.617 41 H 0.292 0.708 42 H 0.129 0.871 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 7.376 -13.989 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.357 3.643 4 O -0.402 6.402 5 C -0.140 4.140 6 C -0.069 4.069 7 C -0.147 4.147 8 C -0.032 4.032 9 C -0.138 4.138 10 C 0.056 3.944 11 H 0.108 0.892 12 C -0.220 4.220 13 N -0.356 5.356 14 C 0.345 3.655 15 C -0.526 4.526 16 H 0.115 0.885 17 C -0.125 4.125 18 N -0.372 5.372 19 Si 0.724 3.276 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.311 4.311 24 C 0.043 3.957 25 N -0.227 5.227 26 C 0.000 4.000 27 N -0.228 5.228 28 C -0.140 4.140 29 C -0.072 4.072 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.217 0.783 41 H 0.104 0.896 42 H 0.147 0.853 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.449 6.253 -13.168 15.940 hybrid contribution -0.191 0.592 0.386 0.732 sum -6.640 6.845 -12.782 15.947 Atomic orbital electron populations 1.23272 0.76074 1.03771 1.02545 1.86564 1.23490 1.32727 1.84281 1.21311 0.89303 0.81327 0.72310 1.90813 1.66907 1.36070 1.46373 1.19011 0.88587 0.95225 1.11146 1.21178 0.94609 0.96450 0.94706 1.20973 0.92997 0.98475 1.02269 1.20170 0.96061 0.93069 0.93912 1.21152 0.90542 1.03933 0.98159 1.20733 0.95151 0.88391 0.90119 0.89167 1.22186 0.95662 1.00342 1.03768 1.45273 1.75058 1.09605 1.05649 1.16992 0.77017 0.91345 0.80135 1.18938 1.26274 0.98753 1.08595 0.88489 1.25734 0.92371 0.97196 0.97165 1.69487 1.12893 1.30224 1.24553 0.86366 0.79266 0.80920 0.81011 1.18390 1.19980 1.18232 1.12670 1.47300 0.85693 0.85432 1.24445 0.89069 0.91076 0.91127 1.81051 1.19629 1.09778 1.12213 1.25435 0.90016 0.92080 0.92457 1.80992 1.20277 1.10385 1.11097 1.21053 0.94189 0.97678 1.01050 1.21426 0.93915 0.97811 0.94073 0.91773 0.91940 0.87969 0.84788 0.84956 0.89328 0.90285 0.93175 0.90421 0.92862 0.78329 0.89626 0.85321 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.27 9.82 -40.54 -0.40 -4.67 16 3 C 0.51 6.95 7.90 34.61 0.27 7.23 16 4 O -0.51 -7.88 16.14 -19.25 -0.31 -8.19 16 5 C -0.14 -1.78 5.87 -104.98 -0.62 -2.40 16 6 C -0.05 -0.61 9.60 -39.17 -0.38 -0.98 16 7 C -0.13 -1.38 9.68 -39.65 -0.38 -1.76 16 8 C -0.03 -0.36 4.96 -104.53 -0.52 -0.87 16 9 C -0.10 -0.99 4.88 -27.89 -0.14 -1.13 16 10 C 0.16 2.10 2.44 -67.94 -0.17 1.93 16 11 H 0.09 1.24 6.58 -51.92 -0.34 0.90 16 12 C -0.16 -2.06 9.49 37.15 0.35 -1.70 16 13 N -0.73 -11.88 4.57 -51.92 -0.24 -12.12 16 14 C 0.46 9.36 6.12 -83.60 -0.51 8.85 16 15 C -0.49 -10.21 7.22 -38.33 -0.28 -10.49 16 16 H 0.10 1.89 7.03 -52.49 -0.37 1.52 16 17 C 0.10 2.22 4.18 -17.21 -0.07 2.15 16 18 N -0.75 -17.24 11.51 55.59 0.64 -16.60 16 19 Si 0.90 17.41 29.60 -169.99 -5.03 12.37 16 20 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 23 C -0.29 -6.64 5.39 -104.94 -0.57 -7.21 16 24 C 0.35 8.81 12.01 -22.40 -0.27 8.54 16 25 N -0.54 -14.22 18.55 41.93 0.78 -13.44 16 26 C 0.31 6.94 14.11 -22.52 -0.32 6.62 16 27 N -0.54 -12.50 18.53 41.78 0.77 -11.73 16 28 C -0.12 -1.45 9.07 -39.64 -0.36 -1.81 16 29 C -0.05 -0.66 9.62 -39.17 -0.38 -1.04 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.13 1.49 7.65 -52.48 -0.40 1.08 16 34 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.08 0.74 8.08 -51.93 -0.42 0.33 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.38 6.11 6.69 -40.82 -0.27 5.84 16 41 H 0.29 6.48 8.29 -40.82 -0.34 6.14 16 42 H 0.13 1.47 7.57 -52.49 -0.40 1.08 16 43 H 0.14 1.53 7.61 -52.48 -0.40 1.13 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -28.57 387.51 -6.31 -34.88 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.11 Total: 6.37 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -3.25 Total: 7.30 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 1.95 Total: -53.89 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.71 Total: -12.86 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.57 -6.31 -34.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173712430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.770 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds