Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47423 * 2 1 4 4 C 1.53006 * 109.47184 * 119.99582 * 2 1 3 5 5 C 1.52999 * 109.46997 * 185.00136 * 4 2 1 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46691 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99597 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00321 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99825 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99912 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00119 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47317 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47211 * 120.00274 * 13 11 9 16 16 H 1.48507 * 109.47345 * 240.00036 * 13 11 9 17 17 N 1.46500 * 109.47548 * 239.99557 * 2 1 3 18 18 C 1.34778 * 119.99992 * 84.99863 * 17 2 1 19 19 O 1.21626 * 119.99789 * 0.02562 * 18 17 2 20 20 C 1.47159 * 120.00230 * 180.02562 * 18 17 2 21 21 C 1.36612 * 125.16594 * 179.72030 * 20 18 17 22 22 C 1.36799 * 114.75040 * 179.78176 * 21 20 18 23 23 C 1.36623 * 114.74115 * 0.50694 * 22 21 20 24 24 C 1.47161 * 125.16193 * 179.68722 * 23 22 21 25 25 N 1.34777 * 120.00275 * 180.02562 * 24 23 22 26 26 O 1.21628 * 120.00167 * 0.02562 * 24 23 22 27 27 S 1.75834 * 109.67609 * 359.72352 * 23 22 21 28 28 H 1.09002 * 109.46911 * 60.00306 * 1 2 3 29 29 H 1.08992 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46828 * 300.00423 * 1 2 3 31 31 H 1.09000 * 109.46866 * 64.99924 * 4 2 1 32 32 H 1.09001 * 109.46611 * 305.00041 * 4 2 1 33 33 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 34 34 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 35 35 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 36 36 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 37 37 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 38 38 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 39 39 H 0.96999 * 120.00076 * 0.02562 * 8 7 6 40 40 H 0.97000 * 120.00284 * 180.02562 * 12 11 9 41 41 H 0.97001 * 120.00257 * 265.00388 * 17 2 1 42 42 H 1.08003 * 122.62666 * 359.97438 * 21 20 18 43 43 H 1.07997 * 122.63250 * 180.24622 * 22 21 20 44 44 H 0.96998 * 119.99377 * 0.02562 * 25 24 23 45 45 H 0.96999 * 120.00125 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3338 2.5635 7 6 5.5996 -1.2264 2.6275 8 7 6.0878 -1.9159 3.8245 9 6 7.4299 -1.9529 4.0937 10 1 8.1285 -1.4734 3.4240 11 6 7.8926 -2.6066 5.2275 12 7 7.0413 -3.1913 6.0434 13 14 9.7233 -2.6565 5.5952 14 1 10.4619 -1.9294 4.5317 15 1 9.9825 -2.0108 6.9072 16 1 10.1810 -4.0686 5.6395 17 7 2.0184 -0.6907 -1.1961 18 6 2.1472 -0.0184 -2.3571 19 8 1.8583 1.1618 -2.4117 20 6 2.6373 -0.7123 -3.5587 21 6 2.8026 -0.1373 -4.7869 22 6 3.2765 -0.9800 -5.7547 23 6 3.4972 -2.2624 -5.3382 24 6 3.9972 -3.3551 -6.1877 25 7 4.1769 -4.5852 -5.6671 26 8 4.2485 -3.1482 -7.3596 27 16 3.0919 -2.4093 -3.6336 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.7516 -1.7714 1.2057 32 1 1.6054 -0.2615 2.1370 33 1 3.8532 0.4371 1.3574 34 1 3.9995 -1.0728 0.4261 35 1 3.6400 -0.8739 3.4508 36 1 3.7863 -2.3841 2.5203 37 1 6.0340 -1.6866 1.7401 38 1 5.8883 -0.1762 2.6705 39 1 5.4604 -2.3468 4.4258 40 1 7.3645 -3.6479 6.8359 41 1 2.2491 -1.6319 -1.1525 42 1 2.5797 0.9020 -4.9781 43 1 3.4579 -0.6580 -6.7694 44 1 3.9762 -4.7503 -4.7325 45 1 4.5062 -5.3055 -6.2271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175696961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = -51.987791 kcal Electronic energy + Delta-G solvation = -25620.588809 eV Core-core repulsion = 21764.177535 eV Total energy + Delta-G solvation = -3856.411274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.33938 -39.97790 -37.78557 -36.86650 -35.32292 -34.29709 -33.37688 -31.93593 -30.59886 -29.93664 -27.50847 -26.31896 -24.29124 -22.83709 -22.24341 -21.74868 -20.95629 -20.71705 -19.70462 -19.24820 -17.59119 -17.22976 -17.03031 -16.47354 -16.11289 -15.58445 -15.26944 -15.21495 -15.00664 -14.70369 -14.29678 -14.06369 -13.67509 -13.63719 -13.19860 -13.18815 -13.03183 -12.84557 -12.83691 -12.42427 -11.84028 -11.70583 -11.54578 -11.33280 -11.06004 -10.85568 -10.82398 -10.76306 -10.46452 -10.42031 -10.34069 -10.32847 -9.99268 -9.70506 -9.54641 -9.31775 -9.20963 -8.88081 -6.92200 -5.77397 -3.05779 -0.44209 0.72086 1.09492 1.57513 2.57252 2.67513 2.78996 2.85210 3.42370 3.48113 3.50396 4.21491 4.31508 4.47928 4.62100 4.64338 4.79364 4.82044 4.89184 5.17758 5.30584 5.37151 5.38329 5.46839 5.50732 5.55186 5.62784 5.70132 5.72670 5.81352 5.88429 6.02893 6.08854 6.15926 6.25450 6.26747 6.34890 6.42518 6.65122 6.86493 6.90350 7.03632 7.59452 7.69907 7.73256 8.42045 9.52923 10.11869 10.46394 11.45786 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.002260 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.379566 B =12384.253519 C =14598.755097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.715 5.715 18 C 0.588 3.412 19 O -0.521 6.521 20 C -0.222 4.222 21 C -0.072 4.072 22 C -0.063 4.063 23 C -0.240 4.240 24 C 0.596 3.404 25 N -0.847 5.847 26 O -0.526 6.526 27 S 0.191 5.809 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.398 0.602 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.401 0.599 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 0.534 -22.460 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.111 0.889 4 C -0.166 4.166 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.219 1.219 17 N -0.367 5.367 18 C 0.373 3.627 19 O -0.398 6.398 20 C -0.343 4.343 21 C -0.105 4.105 22 C -0.097 4.097 23 C -0.362 4.362 24 C 0.380 3.620 25 N -0.411 5.411 26 O -0.403 6.403 27 S 0.459 5.541 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.233 0.767 42 H 0.180 0.820 43 H 0.179 0.821 44 H 0.230 0.770 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -15.397 0.502 -22.129 26.963 hybrid contribution 0.989 -0.009 -0.202 1.010 sum -14.408 0.493 -22.331 26.580 Atomic orbital electron populations 1.22186 0.94999 1.02281 1.02760 1.21153 0.93996 0.97839 0.83274 0.88856 1.21965 0.96989 1.00997 0.96636 1.21540 0.93851 1.01277 0.98693 1.21726 0.97305 1.00255 0.97048 1.20648 0.90958 0.95374 0.90558 1.42396 1.05350 1.65046 1.25112 1.19297 0.83906 1.28312 1.05397 0.91183 1.24751 0.97748 1.00987 0.97709 1.69669 1.32697 1.40910 1.15091 0.86114 0.85058 0.77224 0.77801 1.20542 1.21843 1.21855 1.46015 1.67128 1.13875 1.09647 1.17022 0.77691 0.86193 0.81787 1.90838 1.49881 1.14700 1.84361 1.24969 1.12291 0.97844 0.99233 1.20617 0.97775 1.02148 0.89945 1.20622 0.96849 0.90498 1.01694 1.24808 1.14008 0.99307 0.98033 1.17027 0.76873 0.81860 0.86269 1.43687 1.70186 1.11512 1.15756 1.90885 1.50850 1.82601 1.15948 1.83963 1.59430 1.06416 1.04290 0.92138 0.92355 0.91170 0.91240 0.89828 0.91821 0.92239 0.91966 0.92108 0.96638 0.96556 0.78352 0.93583 0.76735 0.82031 0.82119 0.77013 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 37.16 0.35 -0.93 16 2 C 0.14 1.24 2.57 -67.93 -0.17 1.07 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 4 C -0.13 -1.13 4.75 -26.73 -0.13 -1.25 16 5 C -0.12 -1.33 5.10 -26.73 -0.14 -1.46 16 6 C -0.13 -1.90 5.33 -26.73 -0.14 -2.04 16 7 C 0.15 3.05 6.26 -4.04 -0.03 3.03 16 8 N -0.74 -18.87 5.60 -59.91 -0.34 -19.21 16 9 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 13 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 N -0.72 -6.15 4.53 -54.96 -0.25 -6.40 16 18 C 0.59 6.15 7.77 -12.64 -0.10 6.05 16 19 O -0.52 -7.10 16.48 5.25 0.09 -7.01 16 20 C -0.22 -1.93 6.46 -36.55 -0.24 -2.17 16 21 C -0.07 -0.59 9.88 -40.69 -0.40 -0.99 16 22 C -0.06 -0.50 9.88 -40.69 -0.40 -0.90 16 23 C -0.24 -1.90 6.46 -36.54 -0.24 -2.14 16 24 C 0.60 5.18 8.07 -12.64 -0.10 5.07 16 25 N -0.85 -4.29 8.87 30.37 0.27 -4.02 16 26 O -0.53 -6.47 17.65 5.25 0.09 -6.38 16 27 S 0.19 1.21 21.40 -107.50 -2.30 -1.09 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.25 7.67 -40.82 -0.31 9.93 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.40 2.72 7.71 -40.82 -0.31 2.41 16 42 H 0.16 1.20 8.04 -52.48 -0.42 0.78 16 43 H 0.16 1.11 8.04 -52.49 -0.42 0.69 16 44 H 0.40 1.23 7.93 -40.82 -0.32 0.90 16 45 H 0.41 1.51 8.93 -40.82 -0.36 1.14 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -35.91 397.18 -9.45 -45.36 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.73 Total: 7.10 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.98 Total: -4.13 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.41 Total: -57.30 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.18 Total: -13.39 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.30 Total: -1.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.91 -9.45 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175696961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.626 kcal (2) G-P(sol) polarization free energy of solvation -35.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds