Wall clock time and date at job start Sat Apr 11 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52994 * 109.47404 * 175.00005 * 4 2 1 6 6 C 1.52997 * 109.47404 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47380 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47148 * 179.97438 * 7 6 5 9 9 C 1.36932 * 119.99955 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99871 * 0.02562 * 9 8 7 11 11 C 1.38814 * 120.00126 * 179.97438 * 9 8 7 12 12 N 1.31614 * 119.99879 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00090 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47184 * 89.99983 * 13 11 9 15 15 H 1.48497 * 109.47262 * 210.00239 * 13 11 9 16 16 H 1.48503 * 109.47096 * 330.00513 * 13 11 9 17 17 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 18 18 C 1.34779 * 119.99793 * 274.99565 * 17 2 1 19 19 O 1.21624 * 120.00105 * 0.02562 * 18 17 2 20 20 C 1.47174 * 119.99460 * 179.97438 * 18 17 2 21 21 C 1.36618 * 125.15662 * 180.02562 * 20 18 17 22 22 C 1.36791 * 114.74296 * 180.02562 * 21 20 18 23 23 C 1.36616 * 114.74628 * 359.97438 * 22 21 20 24 24 C 1.47175 * 125.15898 * 179.97438 * 23 22 21 25 25 N 1.34773 * 119.99541 * 180.02562 * 24 23 22 26 26 O 1.21624 * 120.00211 * 0.02562 * 24 23 22 27 27 S 1.75831 * 109.67715 * 359.73813 * 23 22 21 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 32 32 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 33 33 H 1.09000 * 109.47476 * 300.00087 * 5 4 2 34 34 H 1.09008 * 109.46970 * 60.00049 * 5 4 2 35 35 H 1.09000 * 109.47325 * 300.00168 * 6 5 4 36 36 H 1.08995 * 109.47630 * 59.99990 * 6 5 4 37 37 H 1.09000 * 109.46811 * 300.00217 * 7 6 5 38 38 H 1.08998 * 109.47136 * 60.00063 * 7 6 5 39 39 H 0.97004 * 120.00199 * 0.02562 * 8 7 6 40 40 H 0.97004 * 119.99988 * 180.02562 * 12 11 9 41 41 H 0.97004 * 120.00223 * 94.99655 * 17 2 1 42 42 H 1.07998 * 122.62679 * 359.97438 * 21 20 18 43 43 H 1.08005 * 122.62826 * 180.02562 * 22 21 20 44 44 H 0.97003 * 120.00015 * 0.02562 * 25 24 23 45 45 H 0.96996 * 119.99748 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0747 -1.3341 -2.5633 7 6 5.5996 -1.2267 -2.6275 8 7 6.0879 -1.9174 -3.8236 9 6 7.4299 -1.9538 -4.0933 10 1 8.1284 -1.4736 -3.4240 11 6 7.8926 -2.6086 -5.2264 12 7 7.0414 -3.1941 -6.0418 13 14 9.7234 -2.6589 -5.5940 14 1 10.3231 -3.8596 -4.9584 15 1 9.9318 -2.7201 -7.0630 16 1 10.3706 -1.4369 -5.0527 17 7 2.0183 -0.6906 1.1962 18 6 2.1471 -0.0182 2.3571 19 8 1.8575 1.1618 2.4118 20 6 2.6371 -0.7122 3.5589 21 6 2.8071 -0.1359 4.7858 22 6 3.2760 -0.9799 5.7549 23 6 3.4974 -2.2620 5.3383 24 6 3.9995 -3.3542 6.1875 25 7 4.1808 -4.5838 5.6664 26 8 4.2507 -3.1471 7.3593 27 16 3.0851 -2.4108 3.6355 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2617 -2.1370 33 1 3.8532 0.4369 -1.3574 34 1 3.9994 -1.0729 -0.4259 35 1 3.7863 -2.3844 -2.5201 36 1 3.6401 -0.8743 -3.4508 37 1 5.8883 -0.1765 -2.6704 38 1 6.0339 -1.6869 -1.7399 39 1 5.4604 -2.3483 -4.4250 40 1 7.3647 -3.6521 -6.8335 41 1 2.2490 -1.6318 1.1526 42 1 2.5893 0.9048 4.9755 43 1 3.4561 -0.6581 6.7700 44 1 3.9807 -4.7489 4.7317 45 1 4.5120 -5.3036 6.2259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175696962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:14 Heat of formation + Delta-G solvation = -51.920850 kcal Electronic energy + Delta-G solvation = -25620.533522 eV Core-core repulsion = 21764.125150 eV Total energy + Delta-G solvation = -3856.408372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.33875 -39.97788 -37.78578 -36.86651 -35.32165 -34.29732 -33.37594 -31.93502 -30.59802 -29.93553 -27.50735 -26.31778 -24.28932 -22.83543 -22.24304 -21.74702 -20.95576 -20.71567 -19.70422 -19.24753 -17.59059 -17.22924 -17.02846 -16.47345 -16.11339 -15.58321 -15.26824 -15.21522 -15.00541 -14.70239 -14.29665 -14.06415 -13.67605 -13.63516 -13.20223 -13.18143 -13.03048 -12.84782 -12.83454 -12.42397 -11.83838 -11.70573 -11.54536 -11.33101 -11.05907 -10.84551 -10.81747 -10.76137 -10.47436 -10.42022 -10.34057 -10.32828 -10.01580 -9.69952 -9.54568 -9.31704 -9.20939 -8.87447 -6.92152 -5.77130 -3.05532 -0.44129 0.72145 1.09539 1.57605 2.57280 2.67554 2.79006 2.85274 3.42815 3.47948 3.49847 4.21515 4.31516 4.48014 4.62222 4.64382 4.79419 4.82106 4.89217 5.17797 5.30637 5.37207 5.38386 5.46911 5.50808 5.55274 5.62888 5.70190 5.72736 5.81424 5.88476 6.02953 6.08906 6.15950 6.25536 6.26824 6.35063 6.42627 6.65172 6.86593 6.90470 7.03683 7.59494 7.69503 7.73299 8.42324 9.53110 10.12085 10.46611 11.45985 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009449 B = 0.002261 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.552946 B =12382.746740 C =14597.990337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.715 5.715 18 C 0.588 3.412 19 O -0.520 6.520 20 C -0.222 4.222 21 C -0.072 4.072 22 C -0.063 4.063 23 C -0.240 4.240 24 C 0.596 3.404 25 N -0.847 5.847 26 O -0.526 6.526 27 S 0.191 5.809 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.398 0.602 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.401 0.599 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.504 0.542 22.411 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.111 0.889 4 C -0.166 4.166 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 N -0.367 5.367 18 C 0.373 3.627 19 O -0.398 6.398 20 C -0.343 4.343 21 C -0.105 4.105 22 C -0.097 4.097 23 C -0.362 4.362 24 C 0.380 3.620 25 N -0.411 5.411 26 O -0.403 6.403 27 S 0.459 5.541 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.233 0.767 42 H 0.180 0.820 43 H 0.179 0.821 44 H 0.230 0.770 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -15.404 0.510 22.070 26.919 hybrid contribution 1.005 -0.010 0.216 1.028 sum -14.399 0.500 22.286 26.538 Atomic orbital electron populations 1.22187 0.95000 1.02280 1.02760 1.21151 0.93996 0.97838 0.83273 0.88856 1.21963 0.96991 1.00996 0.96638 1.21538 0.93851 1.01277 0.98694 1.21725 0.97308 1.00255 0.97047 1.20647 0.90956 0.95360 0.90569 1.42386 1.05335 1.64991 1.25178 1.19251 0.83911 1.28387 1.05448 0.91240 1.24748 0.97739 1.00975 0.97693 1.69660 1.32773 1.40771 1.15177 0.86182 0.85092 0.77688 0.77205 1.21719 1.21738 1.20751 1.46017 1.67131 1.13870 1.09650 1.17025 0.77692 0.86190 0.81785 1.90837 1.49862 1.14717 1.84360 1.24974 1.12334 0.97781 0.99259 1.20616 0.97790 1.02149 0.89930 1.20619 0.96865 0.90510 1.01675 1.24810 1.13962 0.99326 0.98059 1.17028 0.76887 0.81848 0.86264 1.43687 1.70123 1.11572 1.15759 1.90884 1.50889 1.82561 1.15947 1.83959 1.59378 1.06292 1.04459 0.92355 0.92137 0.91172 0.91240 0.89829 0.91823 0.92238 0.92108 0.91969 0.96561 0.96648 0.78349 0.93533 0.76734 0.82032 0.82120 0.77010 0.75612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 37.16 0.35 -0.93 16 2 C 0.14 1.24 2.57 -67.93 -0.17 1.07 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 4 C -0.13 -1.13 4.75 -26.74 -0.13 -1.25 16 5 C -0.12 -1.33 5.10 -26.74 -0.14 -1.46 16 6 C -0.13 -1.90 5.33 -26.73 -0.14 -2.04 16 7 C 0.15 3.06 6.26 -4.04 -0.03 3.03 16 8 N -0.73 -18.88 5.60 -59.91 -0.34 -19.22 16 9 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 10 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 13 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 N -0.72 -6.15 4.53 -54.96 -0.25 -6.40 16 18 C 0.59 6.15 7.77 -12.63 -0.10 6.06 16 19 O -0.52 -7.10 16.48 5.26 0.09 -7.01 16 20 C -0.22 -1.93 6.46 -36.54 -0.24 -2.17 16 21 C -0.07 -0.59 9.88 -40.69 -0.40 -0.99 16 22 C -0.06 -0.50 9.88 -40.69 -0.40 -0.90 16 23 C -0.24 -1.90 6.46 -36.54 -0.24 -2.14 16 24 C 0.60 5.18 8.08 -12.63 -0.10 5.08 16 25 N -0.85 -4.29 8.87 30.37 0.27 -4.02 16 26 O -0.53 -6.47 17.65 5.26 0.09 -6.38 16 27 S 0.19 1.21 21.40 -107.50 -2.30 -1.09 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.67 7.75 -51.92 -0.40 0.26 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 40 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.40 2.73 7.71 -40.82 -0.31 2.41 16 42 H 0.16 1.20 8.04 -52.49 -0.42 0.78 16 43 H 0.16 1.11 8.04 -52.48 -0.42 0.69 16 44 H 0.40 1.23 7.93 -40.82 -0.32 0.91 16 45 H 0.41 1.51 8.93 -40.82 -0.36 1.14 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -35.89 397.18 -9.45 -45.35 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.73 Total: 7.15 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.98 Total: -4.15 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.41 Total: -57.33 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.18 Total: -13.39 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.30 Total: -1.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.89 -9.45 -45.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175696962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.576 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds