Wall clock time and date at job start Sat Apr 11 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.46903 * 2 1 4 4 C 1.52996 * 109.47532 * 119.99580 * 2 1 3 5 5 C 1.52997 * 109.47445 * 184.99952 * 4 2 1 6 6 C 1.53005 * 109.47299 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.46928 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46754 * 180.02562 * 7 6 5 9 9 C 1.36936 * 119.99977 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99982 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00433 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99604 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00403 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46748 * 59.99788 * 13 11 9 15 15 H 1.48498 * 109.47109 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46833 * 299.99952 * 13 11 9 17 17 N 1.46503 * 109.47200 * 240.00310 * 2 1 3 18 18 C 1.34773 * 120.00132 * 84.99206 * 17 2 1 19 19 O 1.21682 * 119.99801 * 0.02562 * 18 17 2 20 20 C 1.46734 * 119.99561 * 180.02562 * 18 17 2 21 21 C 1.34882 * 125.04888 * 180.02562 * 20 18 17 22 22 C 1.38945 * 113.64687 * 179.73544 * 21 20 18 23 23 C 1.47334 * 122.95887 * 180.28021 * 22 21 20 24 24 N 1.34772 * 119.99693 * 180.24864 * 23 22 21 25 25 O 1.21616 * 120.00096 * 0.25587 * 23 22 21 26 26 C 1.36658 * 114.07834 * 0.48886 * 22 21 20 27 27 S 1.70598 * 110.53057 * 359.52618 * 26 22 21 28 28 H 1.09006 * 109.47135 * 299.99615 * 1 2 3 29 29 H 1.08993 * 109.47456 * 59.99840 * 1 2 3 30 30 H 1.09004 * 109.47200 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47407 * 305.00656 * 4 2 1 32 32 H 1.09006 * 109.46894 * 65.00320 * 4 2 1 33 33 H 1.09000 * 109.47392 * 300.00713 * 5 4 2 34 34 H 1.09006 * 109.46774 * 60.00295 * 5 4 2 35 35 H 1.08996 * 109.47008 * 300.00416 * 6 5 4 36 36 H 1.09000 * 109.46603 * 60.00547 * 6 5 4 37 37 H 1.08996 * 109.47055 * 299.99996 * 7 6 5 38 38 H 1.08993 * 109.47334 * 60.00474 * 7 6 5 39 39 H 0.97000 * 120.00096 * 359.97438 * 8 7 6 40 40 H 0.97001 * 120.00212 * 180.02562 * 12 11 9 41 41 H 0.96994 * 119.99328 * 264.99913 * 17 2 1 42 42 H 1.07994 * 123.17755 * 0.02562 * 21 20 18 43 43 H 0.97004 * 120.00486 * 0.02562 * 24 23 22 44 44 H 0.97006 * 119.99726 * 179.97438 * 24 23 22 45 45 H 1.08002 * 124.73732 * 179.79748 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0750 -1.3349 2.5626 7 6 5.5997 -1.2263 2.6273 8 7 6.0882 -1.9179 3.8228 9 6 7.4302 -1.9535 4.0929 10 1 8.1285 -1.4721 3.4243 11 6 7.8931 -2.6083 5.2260 12 7 7.0419 -3.1945 6.0411 13 14 9.7238 -2.6575 5.5941 14 1 10.2354 -1.2717 5.7463 15 1 9.9556 -3.4113 6.8523 16 1 10.4355 -3.3280 4.4764 17 7 2.0183 -0.6906 -1.1962 18 6 2.1469 -0.0182 -2.3572 19 8 1.8578 1.1625 -2.4117 20 6 2.6355 -0.7101 -3.5553 21 6 2.8033 -0.1386 -4.7655 22 6 3.2848 -1.0125 -5.7326 23 6 3.5485 -0.6029 -7.1231 24 7 4.0110 -1.5020 -8.0142 25 8 3.3491 0.5465 -7.4666 26 6 3.4879 -2.2863 -5.2814 27 16 3.0890 -2.4059 -3.6271 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -0.2617 2.1370 32 1 1.7518 -1.7715 1.2056 33 1 3.9995 -1.0726 0.4259 34 1 3.8532 0.4372 1.3573 35 1 3.6404 -0.8758 3.4505 36 1 3.7867 -2.3851 2.5185 37 1 6.0346 -1.6852 1.7394 38 1 5.8877 -0.1760 2.6716 39 1 5.4609 -2.3499 4.4235 40 1 7.3653 -3.6518 6.8331 41 1 2.2490 -1.6317 -1.1526 42 1 2.5884 0.9011 -4.9630 43 1 4.1698 -2.4189 -7.7402 44 1 4.1843 -1.2325 -8.9297 45 1 3.8543 -3.1024 -5.8866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176774933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:18 Heat of formation + Delta-G solvation = -53.751917 kcal Electronic energy + Delta-G solvation = -25589.723791 eV Core-core repulsion = 21733.236019 eV Total energy + Delta-G solvation = -3856.487773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.50565 -39.93791 -37.56134 -36.76625 -35.27849 -34.24682 -33.32632 -31.88262 -30.55878 -29.82894 -27.46898 -26.08374 -24.50220 -23.78490 -22.08862 -21.02720 -20.87691 -20.68103 -19.54183 -19.26898 -17.60482 -17.43920 -17.00771 -16.58649 -15.93227 -15.53857 -15.15841 -15.11972 -14.83865 -14.65752 -14.11059 -13.99271 -13.68590 -13.58732 -13.22395 -13.18376 -13.14113 -12.96306 -12.83410 -12.38240 -11.79905 -11.76617 -11.49812 -11.29068 -11.01944 -10.80105 -10.72566 -10.57698 -10.45312 -10.34627 -10.28474 -10.22124 -10.01490 -9.67348 -9.56401 -9.31900 -9.16160 -8.85240 -6.90251 -5.75225 -3.03609 -0.14960 0.82576 1.19777 1.22829 2.69191 2.73558 3.00152 3.07438 3.44635 3.48652 3.50004 4.19065 4.38951 4.49188 4.55255 4.64521 4.65670 4.85399 4.94310 5.21005 5.22929 5.36042 5.42014 5.48057 5.54234 5.58840 5.66986 5.69537 5.75936 5.86790 5.93343 6.07676 6.15586 6.25850 6.29140 6.31979 6.37910 6.45827 6.78403 6.89388 6.93294 7.13678 7.70664 7.75104 7.84991 8.44232 9.54819 10.14081 10.48675 11.47770 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.002052 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.430021 B =13639.311095 C =15360.286074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.717 5.717 18 C 0.591 3.409 19 O -0.523 6.523 20 C -0.269 4.269 21 C -0.012 4.012 22 C -0.164 4.164 23 C 0.583 3.417 24 N -0.850 5.850 25 O -0.534 6.534 26 C -0.203 4.203 27 S 0.258 5.742 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.397 0.603 42 H 0.165 0.835 43 H 0.400 0.600 44 H 0.407 0.593 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.098 -1.557 -25.813 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.111 0.889 4 C -0.166 4.166 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.369 5.369 18 C 0.377 3.623 19 O -0.401 6.401 20 C -0.390 4.390 21 C -0.044 4.044 22 C -0.182 4.182 23 C 0.367 3.633 24 N -0.414 5.414 25 O -0.411 6.411 26 C -0.343 4.343 27 S 0.527 5.473 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.232 0.768 42 H 0.182 0.818 43 H 0.229 0.771 44 H 0.238 0.762 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.295 -1.086 -24.783 28.631 hybrid contribution 1.211 -0.089 -0.947 1.540 sum -13.084 -1.174 -25.731 28.890 Atomic orbital electron populations 1.22186 0.95088 1.02220 1.02721 1.21128 0.93942 0.97845 0.83323 0.88916 1.21957 0.96960 1.00974 0.96662 1.21538 0.93885 1.01258 0.98671 1.21725 0.97277 1.00246 0.97076 1.20647 0.90990 0.95347 0.90565 1.42379 1.05325 1.64905 1.25269 1.19207 0.83935 1.28382 1.05492 0.91297 1.24754 0.97735 1.00990 0.97716 1.69652 1.32851 1.40737 1.15143 0.86251 0.85109 0.77492 0.77254 1.21266 1.21673 1.21289 1.45985 1.67448 1.13792 1.09652 1.16896 0.77517 0.86181 0.81746 1.90854 1.50002 1.14782 1.84422 1.24263 1.16398 0.99008 0.99292 1.20343 0.93132 1.01685 0.89193 1.19045 1.09856 0.93384 0.95910 1.17596 0.76244 0.84964 0.84503 1.43666 1.69848 1.13704 1.14170 1.90874 1.51815 1.18696 1.79668 1.26127 1.05357 1.00919 1.01914 1.83171 1.56207 1.05351 1.02615 0.91250 0.92139 0.92393 0.89900 0.91264 0.92215 0.91837 0.91998 0.92106 0.96637 0.96559 0.78347 0.93501 0.76833 0.81782 0.77124 0.76152 0.80516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.14 1.33 2.57 -67.93 -0.17 1.16 16 3 H 0.09 1.04 7.58 -51.92 -0.39 0.65 16 4 C -0.13 -1.18 4.75 -26.73 -0.13 -1.31 16 5 C -0.12 -1.37 5.10 -26.73 -0.14 -1.51 16 6 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 7 C 0.15 3.09 6.26 -4.04 -0.03 3.07 16 8 N -0.73 -19.02 5.60 -59.92 -0.34 -19.36 16 9 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 13 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 N -0.72 -6.60 4.53 -55.10 -0.25 -6.85 16 18 C 0.59 6.74 7.75 -12.83 -0.10 6.64 16 19 O -0.52 -7.84 16.45 5.21 0.09 -7.75 16 20 C -0.27 -2.54 6.37 -37.34 -0.24 -2.78 16 21 C -0.01 -0.13 9.47 -40.51 -0.38 -0.51 16 22 C -0.16 -1.32 5.82 -106.51 -0.62 -1.94 16 23 C 0.58 5.15 8.06 -12.56 -0.10 5.05 16 24 N -0.85 -3.55 8.84 30.41 0.27 -3.28 16 25 O -0.53 -7.09 17.52 5.26 0.09 -7.00 16 26 C -0.20 -1.02 10.41 30.16 0.31 -0.71 16 27 S 0.26 1.48 22.09 -107.50 -2.37 -0.90 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.32 7.67 -40.82 -0.31 10.01 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.40 2.86 7.68 -40.82 -0.31 2.55 16 42 H 0.16 1.91 7.95 -52.49 -0.42 1.49 16 43 H 0.40 0.41 7.29 -40.82 -0.30 0.11 16 44 H 0.41 1.27 8.93 -40.82 -0.36 0.91 16 45 H 0.18 0.21 6.99 -52.49 -0.37 -0.15 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -37.28 395.23 -9.13 -46.41 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.64 Total: 6.50 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.63 Total: -3.50 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.41 Total: -57.28 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.18 Total: -14.75 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.37 Total: -0.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.28 -9.13 -46.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176774933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.345 kcal (2) G-P(sol) polarization free energy of solvation -37.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds