Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47411 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46938 * 179.97438 * 7 6 5 9 9 C 1.36935 * 119.99721 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00287 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00196 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99660 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00438 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46824 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46960 * 119.99490 * 13 11 9 16 16 H 1.48497 * 109.47349 * 239.99790 * 13 11 9 17 17 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 2 1 19 19 O 1.21683 * 120.00007 * 0.28045 * 18 17 2 20 20 C 1.46732 * 119.99922 * 180.27884 * 18 17 2 21 21 C 1.34879 * 125.05591 * 180.02562 * 20 18 17 22 22 C 1.38935 * 113.65737 * 179.97438 * 21 20 18 23 23 C 1.47328 * 122.96696 * 180.02562 * 22 21 20 24 24 N 1.34773 * 120.00463 * 180.02562 * 23 22 21 25 25 O 1.21624 * 119.99760 * 359.97438 * 23 22 21 26 26 C 1.36660 * 114.07472 * 359.97438 * 22 21 20 27 27 S 1.70598 * 110.52982 * 359.75173 * 26 22 21 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 30 30 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 31 31 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 32 32 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 33 33 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 34 34 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 35 35 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 36 36 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 37 37 H 1.08997 * 109.47193 * 299.99893 * 7 6 5 38 38 H 1.08998 * 109.46968 * 60.00156 * 7 6 5 39 39 H 0.96995 * 119.99983 * 0.02562 * 8 7 6 40 40 H 0.97003 * 120.00102 * 180.02562 * 12 11 9 41 41 H 0.97001 * 120.00384 * 95.00578 * 17 2 1 42 42 H 1.08003 * 123.17401 * 359.97438 * 21 20 18 43 43 H 0.97003 * 120.00174 * 359.97438 * 24 23 22 44 44 H 0.96996 * 120.00332 * 180.02562 * 24 23 22 45 45 H 1.08007 * 124.73761 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 6 5.5995 -1.2254 -2.6281 8 7 6.0878 -1.9161 -3.8243 9 6 7.4299 -1.9524 -4.0939 10 1 8.1284 -1.4715 -3.4250 11 6 7.8926 -2.6063 -5.2276 12 7 7.0414 -3.1919 -6.0430 13 14 9.7233 -2.6552 -5.5959 14 1 10.4616 -1.9272 -4.5329 15 1 10.1818 -4.0670 -5.6397 16 1 9.9816 -2.0099 -6.9081 17 7 2.0183 -0.6906 1.1962 18 6 2.1523 -0.0169 2.3557 19 8 1.8629 1.1638 2.4104 20 6 2.6472 -0.7071 3.5523 21 6 2.8198 -0.1345 4.7612 22 6 3.3007 -1.0083 5.7284 23 6 3.5629 -0.5992 7.1192 24 7 4.0301 -1.4970 8.0092 25 8 3.3587 0.5491 7.4641 26 6 3.5080 -2.2812 5.2762 27 16 3.0948 -2.4043 3.6256 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2618 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0727 -0.4260 35 1 3.7863 -2.3843 -2.5200 36 1 3.6401 -0.8741 -3.4508 37 1 5.8875 -0.1751 -2.6715 38 1 6.0345 -1.6850 -1.7406 39 1 5.4605 -2.3476 -4.4251 40 1 7.3647 -3.6492 -6.8350 41 1 2.2491 -1.6318 1.1526 42 1 2.6045 0.9053 4.9588 43 1 4.1934 -2.4128 7.7341 44 1 4.2024 -1.2278 8.9250 45 1 3.8772 -3.0965 5.8806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176774934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = -53.936076 kcal Electronic energy + Delta-G solvation = -25591.577766 eV Core-core repulsion = 21735.082007 eV Total energy + Delta-G solvation = -3856.495758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.50592 -39.93797 -37.56203 -36.76726 -35.28151 -34.24697 -33.32934 -31.88441 -30.56098 -29.83006 -27.47143 -26.08419 -24.50444 -23.78821 -22.09301 -21.02828 -20.87861 -20.68319 -19.54188 -19.26934 -17.60505 -17.43996 -17.01202 -16.58793 -15.93275 -15.53834 -15.15955 -15.12030 -14.84024 -14.66015 -14.11179 -13.99182 -13.68370 -13.59147 -13.21968 -13.18897 -13.14677 -12.96491 -12.83397 -12.38360 -11.80220 -11.76752 -11.49830 -11.29468 -11.02417 -10.83282 -10.72958 -10.57731 -10.42701 -10.34882 -10.28544 -10.22142 -9.97451 -9.68425 -9.56490 -9.31979 -9.16210 -8.86573 -6.90473 -5.75896 -3.04174 -0.15013 0.82527 1.19891 1.22630 2.69054 2.73535 3.00124 3.07409 3.43339 3.48965 3.51332 4.19019 4.38851 4.49152 4.55069 4.64369 4.65524 4.85327 4.94239 5.20975 5.22861 5.35977 5.41888 5.48013 5.54060 5.58675 5.66791 5.69463 5.75764 5.86671 5.93236 6.07557 6.15458 6.25867 6.28910 6.31853 6.37549 6.45582 6.78363 6.89124 6.92993 7.13564 7.71289 7.75074 7.84906 8.43556 9.54367 10.13592 10.48163 11.47257 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.002055 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.428335 B =13623.891971 C =15349.229405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.717 5.717 18 C 0.591 3.409 19 O -0.523 6.523 20 C -0.269 4.269 21 C -0.012 4.012 22 C -0.164 4.164 23 C 0.583 3.417 24 N -0.850 5.850 25 O -0.534 6.534 26 C -0.203 4.203 27 S 0.258 5.742 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.397 0.603 42 H 0.165 0.835 43 H 0.400 0.600 44 H 0.407 0.593 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -1.518 25.875 29.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.111 0.889 4 C -0.166 4.166 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.369 5.369 18 C 0.377 3.623 19 O -0.401 6.401 20 C -0.390 4.390 21 C -0.044 4.044 22 C -0.182 4.182 23 C 0.367 3.633 24 N -0.414 5.414 25 O -0.411 6.411 26 C -0.343 4.343 27 S 0.526 5.474 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.232 0.768 42 H 0.182 0.818 43 H 0.229 0.771 44 H 0.238 0.762 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.278 -1.040 24.866 28.692 hybrid contribution 1.216 -0.098 0.922 1.529 sum -13.062 -1.138 25.788 28.929 Atomic orbital electron populations 1.22186 0.95083 1.02220 1.02717 1.21127 0.93952 0.97841 0.83319 0.88914 1.21959 0.96956 1.00976 0.96668 1.21537 0.93890 1.01264 0.98663 1.21726 0.97274 1.00256 0.97072 1.20651 0.90994 0.95359 0.90553 1.42397 1.05346 1.64947 1.25211 1.19300 0.83931 1.28225 1.05399 0.91180 1.24755 0.97748 1.01041 0.97723 1.69672 1.32668 1.40877 1.15138 0.86108 0.85073 0.77201 0.77789 1.20561 1.21869 1.21860 1.45987 1.67415 1.13738 1.09741 1.16897 0.77528 0.86173 0.81743 1.90854 1.50076 1.14794 1.84336 1.24260 1.16405 0.98939 0.99355 1.20340 0.93148 1.01696 0.89169 1.19041 1.09844 0.93438 0.95872 1.17596 0.76256 0.84941 0.84515 1.43663 1.69667 1.13871 1.14182 1.90876 1.51802 1.18748 1.79634 1.26129 1.05307 1.00943 1.01932 1.83169 1.55994 1.05221 1.02967 0.92392 0.92146 0.91247 0.91260 0.89900 0.91840 0.92212 0.92105 0.91996 0.96546 0.96624 0.78351 0.93603 0.76831 0.81782 0.77125 0.76153 0.80514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.49 37.16 0.35 -1.02 16 2 C 0.14 1.33 2.58 -67.93 -0.17 1.16 16 3 H 0.09 1.04 7.57 -51.93 -0.39 0.65 16 4 C -0.13 -1.18 4.75 -26.73 -0.13 -1.31 16 5 C -0.12 -1.37 5.10 -26.73 -0.14 -1.51 16 6 C -0.13 -1.93 5.33 -26.73 -0.14 -2.08 16 7 C 0.15 3.09 6.26 -4.04 -0.03 3.06 16 8 N -0.74 -19.01 5.60 -59.91 -0.34 -19.35 16 9 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 10 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 12 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 13 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 17 N -0.72 -6.59 4.52 -55.10 -0.25 -6.84 16 18 C 0.59 6.73 7.75 -12.83 -0.10 6.63 16 19 O -0.52 -7.84 16.45 5.20 0.09 -7.75 16 20 C -0.27 -2.54 6.37 -37.34 -0.24 -2.78 16 21 C -0.01 -0.13 9.47 -40.52 -0.38 -0.51 16 22 C -0.16 -1.32 5.82 -106.51 -0.62 -1.94 16 23 C 0.58 5.15 8.06 -12.56 -0.10 5.05 16 24 N -0.85 -3.54 8.84 30.41 0.27 -3.27 16 25 O -0.53 -7.09 17.53 5.26 0.09 -7.00 16 26 C -0.20 -1.02 10.41 30.16 0.31 -0.71 16 27 S 0.26 1.47 22.09 -107.50 -2.37 -0.90 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 10.32 7.67 -40.82 -0.31 10.00 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 41 H 0.40 2.86 7.68 -40.82 -0.31 2.54 16 42 H 0.16 1.91 7.95 -52.48 -0.42 1.49 16 43 H 0.40 0.41 7.29 -40.82 -0.30 0.11 16 44 H 0.41 1.27 8.93 -40.82 -0.36 0.91 16 45 H 0.18 0.21 6.99 -52.48 -0.37 -0.15 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -37.33 395.23 -9.13 -46.46 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.64 Total: 6.40 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.63 Total: -3.47 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.41 Total: -57.26 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.18 Total: -14.75 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.37 Total: -0.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.33 -9.13 -46.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176774934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.479 kcal (2) G-P(sol) polarization free energy of solvation -37.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds