Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46997 * 2 1 4 4 N 1.46496 * 109.47440 * 240.00038 * 2 1 3 5 5 C 1.34777 * 120.00253 * 84.99305 * 4 2 1 6 6 O 1.21279 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00035 * 179.97438 * 5 4 2 8 8 H 1.09006 * 109.47010 * 40.00712 * 7 5 4 9 9 N 1.46897 * 109.47259 * 160.00198 * 7 5 4 10 10 C 1.52994 * 109.47552 * 280.00728 * 7 5 4 11 11 O 1.42905 * 109.47641 * 174.99910 * 10 7 5 12 12 C 1.50697 * 109.47030 * 119.99418 * 2 1 3 13 13 O 1.21292 * 119.99482 * 120.00492 * 12 2 1 14 14 N 1.34772 * 120.00506 * 300.00405 * 12 2 1 15 15 C 1.40008 * 120.00309 * 175.19093 * 14 12 2 16 16 C 1.39369 * 119.90676 * 325.48178 * 15 14 12 17 17 C 1.38368 * 120.46642 * 179.72447 * 16 15 14 18 18 C 1.38009 * 120.28728 * 0.55248 * 17 16 15 19 19 F 1.35101 * 120.09314 * 179.70363 * 18 17 16 20 20 C 1.41005 * 119.81295 * 359.72308 * 18 17 16 21 21 C 1.41291 * 120.22972 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00293 * 215.24003 * 21 20 18 23 23 C 1.39925 * 120.00196 * 35.23992 * 21 20 18 24 24 N 1.30855 * 120.00238 * 210.28907 * 23 21 20 25 25 Si 1.86805 * 119.99739 * 30.28181 * 23 21 20 26 26 H 1.48505 * 109.46986 * 94.47498 * 25 23 21 27 27 H 1.48495 * 109.47150 * 214.47320 * 25 23 21 28 28 H 1.48500 * 109.47090 * 334.47723 * 25 23 21 29 29 C 1.38134 * 119.91169 * 145.75868 * 15 14 12 30 30 H 1.08997 * 109.46470 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46924 * 300.00215 * 1 2 3 32 32 H 1.08994 * 109.46640 * 60.00519 * 1 2 3 33 33 H 0.96999 * 119.99797 * 265.00330 * 4 2 1 34 34 H 1.00905 * 110.99496 * 60.00338 * 9 7 5 35 35 H 1.00900 * 111.00269 * 183.95179 * 9 7 5 36 36 H 1.09002 * 109.47027 * 294.99865 * 10 7 5 37 37 H 1.09001 * 109.47634 * 54.99934 * 10 7 5 38 38 H 0.96695 * 114.00220 * 179.97438 * 11 10 7 39 39 H 0.96998 * 119.99687 * 355.18654 * 14 12 2 40 40 H 1.07998 * 119.76872 * 0.02562 * 16 15 14 41 41 H 1.08000 * 119.85383 * 180.26162 * 17 16 15 42 42 H 0.96995 * 119.99653 * 179.97438 * 24 23 21 43 43 H 1.08001 * 120.14848 * 359.97438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1585 -2.4116 7 6 2.6501 -0.7286 -3.5874 8 1 2.2158 -1.7273 -3.6333 9 7 2.2614 0.0298 -4.7839 10 6 4.1749 -0.8378 -3.5258 11 8 4.6422 -1.6119 -4.6323 12 6 2.0324 -0.7103 1.2305 13 8 2.7298 -1.6964 1.1192 14 7 1.7068 -0.2498 2.4546 15 6 2.0882 -0.9653 3.5960 16 6 2.1248 -2.3581 3.5631 17 6 2.5055 -3.0766 4.6827 18 6 2.8427 -2.4206 5.8492 19 9 3.2081 -3.1263 6.9418 20 6 2.8044 -1.0119 5.8975 21 6 3.1473 -0.3314 7.0873 22 1 2.6312 0.5781 7.3572 23 6 4.1557 -0.8357 7.9160 24 7 4.1057 -0.6293 9.2072 25 14 5.5731 -1.8039 7.1790 26 1 6.7157 -0.8907 6.9222 27 1 5.9926 -2.8668 8.1274 28 1 5.1380 -2.4237 5.9016 29 6 2.4218 -0.2890 4.7533 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 2.2491 -1.6317 -1.1525 34 1 2.6519 0.9600 -4.7651 35 1 2.5308 -0.4585 -5.6248 36 1 4.6126 0.1595 -3.5694 37 1 4.4672 -1.3224 -2.5942 38 1 5.6025 -1.7223 -4.6575 39 1 1.2082 0.5773 2.5448 40 1 1.8587 -2.8802 2.6559 41 1 2.5344 -4.1555 4.6449 42 1 4.8046 -0.9793 9.7816 43 1 2.3894 0.7902 4.7795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219518543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -138.942220 kcal Electronic energy + Delta-G solvation = -28983.833420 eV Core-core repulsion = 24557.438342 eV Total energy + Delta-G solvation = -4426.395077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.64328 -40.77019 -39.74405 -37.70048 -37.34472 -35.26153 -34.55780 -34.29676 -33.46840 -31.24402 -30.56446 -28.42963 -28.04590 -25.43475 -25.05339 -23.61699 -21.59625 -21.42591 -20.54747 -19.88936 -18.77663 -18.25378 -17.40900 -17.10389 -16.44103 -16.22458 -16.07877 -15.86447 -15.47341 -15.24853 -15.19507 -14.96246 -14.60030 -14.24160 -14.19588 -13.73516 -13.72147 -13.05394 -13.02478 -12.93932 -12.84897 -12.59137 -12.33596 -12.17428 -12.03723 -11.76654 -11.66714 -11.35358 -11.26789 -10.75123 -10.66894 -10.25269 -10.09793 -9.89824 -9.71872 -9.47519 -9.28161 -9.17468 -9.13181 -7.89550 -7.18430 -7.08440 -4.58087 2.04400 2.19289 2.43831 2.54914 2.78822 3.14574 3.22140 3.29296 3.30586 3.71647 3.99797 4.22682 4.33248 4.42228 4.52425 4.55876 4.67028 4.80804 4.89189 4.98892 5.09122 5.16451 5.33611 5.51401 5.69636 5.81396 5.88367 6.03108 6.20251 6.30106 6.45899 6.52551 6.60401 6.96776 7.01371 7.06911 7.16957 7.19079 7.19838 7.40928 7.53505 7.65511 7.87260 7.92395 8.17229 8.26157 8.47514 8.63073 9.90461 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.002403 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.450951 B =11649.346130 C =12170.042159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.115 0.885 4 N -0.709 5.709 5 C 0.528 3.472 6 O -0.525 6.525 7 C 0.080 3.920 8 H 0.112 0.888 9 N -0.823 5.823 10 C 0.044 3.956 11 O -0.570 6.570 12 C 0.506 3.494 13 O -0.519 6.519 14 N -0.659 5.659 15 C 0.158 3.842 16 C -0.213 4.213 17 C -0.098 4.098 18 C -0.025 4.025 19 F -0.150 7.150 20 C 0.080 3.920 21 C -0.460 4.460 22 H 0.096 0.904 23 C 0.096 3.904 24 N -0.781 5.781 25 Si 0.914 3.086 26 H -0.287 1.287 27 H -0.277 1.277 28 H -0.244 1.244 29 C -0.213 4.213 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.411 0.589 34 H 0.350 0.650 35 H 0.355 0.645 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.387 0.613 39 H 0.406 0.594 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 0.364 -20.683 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.133 0.867 4 N -0.364 5.364 5 C 0.313 3.687 6 O -0.400 6.400 7 C -0.036 4.036 8 H 0.129 0.871 9 N -0.355 5.355 10 C -0.036 4.036 11 O -0.377 6.377 12 C 0.292 3.708 13 O -0.394 6.394 14 N -0.303 5.303 15 C 0.066 3.934 16 C -0.234 4.234 17 C -0.118 4.118 18 C -0.046 4.046 19 F -0.130 7.130 20 C 0.076 3.924 21 C -0.487 4.487 22 H 0.114 0.886 23 C -0.127 4.127 24 N -0.403 5.403 25 Si 0.740 3.260 26 H -0.215 1.215 27 H -0.203 1.203 28 H -0.167 1.167 29 C -0.235 4.235 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.248 0.752 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.235 0.765 39 H 0.241 0.759 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.660 0.388 -20.377 20.553 hybrid contribution 2.260 -0.478 0.253 2.324 sum -0.400 -0.090 -20.124 20.128 Atomic orbital electron populations 1.22137 0.92432 1.03452 1.03787 1.20771 0.95920 0.98094 0.83462 0.86705 1.45747 1.67270 1.15045 1.08339 1.20180 0.77727 0.87127 0.83709 1.90706 1.49309 1.15638 1.84385 1.21288 0.92558 0.99191 0.90550 0.87056 1.58534 1.67298 1.06722 1.02960 1.22907 0.95066 0.95488 0.90159 1.86377 1.28164 1.74853 1.48280 1.20528 0.80407 0.85270 0.84635 1.90725 1.36365 1.26105 1.86222 1.43372 1.55704 1.26659 1.04589 1.17480 0.99753 0.90919 0.85280 1.20067 1.13349 0.91528 0.98411 1.20460 1.00717 0.98616 0.92013 1.17789 1.13058 0.89944 0.83767 1.91051 1.89724 1.78572 1.53612 1.17404 0.92655 0.89450 0.92870 1.19216 1.17730 1.10436 1.01307 0.88577 1.26198 0.99572 0.93154 0.93759 1.69795 1.31005 1.34872 1.04646 0.86229 0.78617 0.79038 0.82146 1.21512 1.20273 1.16703 1.20614 1.13013 0.98236 0.91596 0.91530 0.90637 0.90633 0.75153 0.83589 0.83024 0.92805 0.92142 0.76501 0.75860 0.86853 0.87352 0.90208 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.39 37.16 0.35 -1.10 16 2 C 0.13 1.36 2.98 -69.08 -0.21 1.15 16 3 H 0.12 1.22 7.58 -51.93 -0.39 0.83 16 4 N -0.71 -7.26 4.95 -54.93 -0.27 -7.53 16 5 C 0.53 5.68 7.04 -10.99 -0.08 5.60 16 6 O -0.53 -7.19 15.91 5.56 0.09 -7.10 16 7 C 0.08 0.68 3.45 -68.87 -0.24 0.45 16 8 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 9 N -0.82 -7.08 8.98 -5.66 -0.05 -7.14 16 10 C 0.04 0.32 6.62 37.15 0.25 0.57 16 11 O -0.57 -3.82 13.33 -35.23 -0.47 -4.28 16 12 C 0.51 7.10 6.96 -10.99 -0.08 7.02 16 13 O -0.52 -8.94 13.57 5.55 0.08 -8.87 16 14 N -0.66 -9.56 5.19 -9.90 -0.05 -9.62 16 15 C 0.16 3.05 6.25 -83.74 -0.52 2.52 16 16 C -0.21 -4.35 8.66 -39.11 -0.34 -4.69 16 17 C -0.10 -2.15 10.00 -39.62 -0.40 -2.54 16 18 C -0.03 -0.62 5.07 -38.62 -0.20 -0.81 16 19 F -0.15 -3.79 12.94 2.25 0.03 -3.76 16 20 C 0.08 1.98 4.86 -106.78 -0.52 1.46 16 21 C -0.46 -12.09 9.38 -37.79 -0.35 -12.44 16 22 H 0.10 2.58 8.06 -52.49 -0.42 2.15 16 23 C 0.10 2.52 4.69 -17.34 -0.08 2.44 16 24 N -0.78 -20.57 13.93 55.55 0.77 -19.80 16 25 Si 0.91 21.49 25.38 -169.99 -4.31 17.18 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.24 -5.93 5.52 56.52 0.31 -5.62 16 29 C -0.21 -4.53 9.70 -38.71 -0.38 -4.91 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.57 7.68 -51.93 -0.40 0.18 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.41 3.97 7.79 -40.82 -0.32 3.66 16 34 H 0.35 3.03 8.58 -39.29 -0.34 2.70 16 35 H 0.36 2.57 8.75 -39.29 -0.34 2.23 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.39 1.09 9.12 45.56 0.42 1.50 16 39 H 0.41 4.49 8.39 -40.82 -0.34 4.14 16 40 H 0.11 2.22 6.47 -52.49 -0.34 1.88 16 41 H 0.11 2.12 8.06 -52.49 -0.42 1.69 16 42 H 0.29 6.86 8.30 -40.82 -0.34 6.53 16 43 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -32.14 366.47 -6.12 -38.26 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -4.66 Total: 12.42 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.79 Total: -5.28 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.40 Total: -44.08 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.31 Total: -20.25 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.03 Total: -3.76 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.31 Total: 17.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.14 -6.12 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219518543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.685 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds