Wall clock time and date at job start Sat Apr 11 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35670 * 117.00132 * 2 1 4 4 C 1.38929 * 119.68635 * 180.02562 * 3 2 1 5 5 C 1.38373 * 119.11382 * 179.97438 * 4 3 2 6 6 C 1.38831 * 118.48426 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.35562 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47107 * 89.99812 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.46818 * 35.00369 * 9 8 7 11 11 C 1.52993 * 109.47308 * 275.00154 * 9 8 7 12 12 C 1.52998 * 109.46904 * 155.00222 * 9 8 7 13 13 N 1.46504 * 109.47273 * 305.00142 * 12 9 8 14 14 C 1.34773 * 120.00128 * 180.02562 * 13 12 9 15 15 O 1.21283 * 120.00074 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99860 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.46986 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99796 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00071 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99866 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99890 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 120.00102 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47278 * 60.00058 * 22 20 18 24 24 H 1.48499 * 109.47350 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47496 * 300.00176 * 22 20 18 26 26 C 1.38051 * 119.29086 * 0.25134 * 6 5 4 27 27 N 1.31967 * 120.83042 * 359.45519 * 26 6 5 28 28 H 1.09005 * 109.47303 * 299.99770 * 1 2 3 29 29 H 1.08997 * 109.47131 * 60.00233 * 1 2 3 30 30 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.44230 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.76076 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47152 * 329.99899 * 7 6 5 34 34 H 1.09001 * 109.46980 * 209.99999 * 7 6 5 35 35 H 1.00908 * 110.99847 * 56.05051 * 8 7 6 36 36 H 1.08999 * 109.47404 * 180.02562 * 11 9 8 37 37 H 1.09004 * 109.47538 * 300.00000 * 11 9 8 38 38 H 1.09001 * 109.46997 * 59.99957 * 11 9 8 39 39 H 1.08996 * 109.47740 * 65.00014 * 12 9 8 40 40 H 1.08998 * 109.47287 * 185.00567 * 12 9 8 41 41 H 0.97006 * 119.99950 * 0.02562 * 13 12 9 42 42 H 1.08993 * 109.47472 * 300.00539 * 16 14 13 43 43 H 1.09002 * 109.46893 * 60.00585 * 16 14 13 44 44 H 0.96995 * 119.99941 * 179.97438 * 21 20 18 45 45 H 1.07995 * 119.58040 * 179.72674 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0485 2.5130 -0.0011 6 6 3.2505 3.6490 -0.0005 7 6 3.8768 5.0197 -0.0005 8 7 4.0798 5.4654 -1.3854 9 6 4.6896 6.8013 -1.4246 10 1 5.3861 6.9072 -0.5930 11 6 3.5955 7.8648 -1.3121 12 6 5.4410 6.9804 -2.7453 13 7 6.4078 5.8919 -2.9085 14 6 7.1886 5.8430 -4.0060 15 8 7.0911 6.7004 -4.8583 16 6 8.1836 4.7236 -4.1736 17 16 9.0724 4.9354 -5.7361 18 6 10.1360 3.5319 -5.6757 19 1 10.0948 2.8591 -4.8319 20 6 11.0267 3.2910 -6.7126 21 7 11.0772 4.1114 -7.7408 22 14 12.1538 1.8028 -6.6490 23 1 11.3360 0.5649 -6.5837 24 1 13.0026 1.7722 -7.8670 25 1 13.0192 1.8883 -5.4452 26 6 1.8771 3.5096 0.0059 27 7 1.3186 2.3140 0.0006 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0229 0.3694 -0.0014 32 1 5.1255 2.5946 -0.0011 33 1 4.8375 4.9802 0.5130 34 1 3.2185 5.7200 0.5138 35 1 3.2128 5.4488 -1.9014 36 1 4.0478 8.8561 -1.3416 37 1 2.8988 7.7589 -2.1437 38 1 3.0602 7.7372 -0.3712 39 1 4.7313 6.9630 -3.5724 40 1 5.9667 7.9352 -2.7376 41 1 6.4861 5.2064 -2.2267 42 1 8.8930 4.7411 -3.3463 43 1 7.6581 3.7687 -4.1816 44 1 11.6999 3.9433 -8.4652 45 1 1.2518 4.3902 0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266923808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:26 Heat of formation + Delta-G solvation = -41.736549 kcal Electronic energy + Delta-G solvation = -25733.073373 eV Core-core repulsion = 21877.106625 eV Total energy + Delta-G solvation = -3855.966747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.99457 -39.24186 -38.51930 -37.39784 -34.25950 -32.95962 -32.38352 -32.15654 -30.01014 -29.15793 -27.70241 -26.04503 -25.43534 -25.07428 -23.76346 -22.10587 -21.27382 -20.11463 -18.74869 -17.78711 -17.50032 -16.60955 -16.37946 -16.11805 -16.06310 -15.45364 -15.10810 -14.89971 -14.76510 -14.72772 -14.48197 -13.94955 -13.82824 -13.64096 -13.38402 -13.14955 -12.86760 -12.81531 -12.62050 -12.41509 -12.37657 -12.15756 -11.86268 -11.59621 -11.45979 -11.20143 -11.00428 -10.99817 -10.72887 -10.20842 -9.97277 -9.77460 -9.29591 -9.01851 -8.94639 -8.69232 -8.67191 -8.17523 -6.44186 -6.17118 -3.86970 0.76671 0.92624 2.75350 3.12636 3.23488 3.26578 3.30592 3.32574 3.37330 3.78707 3.92413 3.95958 4.25187 4.37432 4.48573 4.58733 4.61634 4.72958 4.81863 4.92936 4.94557 4.96050 5.07770 5.17418 5.17717 5.26336 5.26941 5.32754 5.37264 5.44049 5.56314 5.65548 5.69014 5.75372 5.92328 5.95672 5.99240 6.07219 6.22938 6.56354 6.77973 6.87027 6.99023 7.47295 7.63645 7.92620 8.39571 8.77118 9.27959 10.90274 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.002335 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.857532 B =11987.625948 C =14430.526778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.318 3.682 4 C -0.189 4.189 5 C -0.017 4.017 6 C -0.173 4.173 7 C 0.109 3.891 8 N -0.679 5.679 9 C 0.072 3.928 10 H 0.086 0.914 11 C -0.180 4.180 12 C 0.134 3.866 13 N -0.724 5.724 14 C 0.530 3.470 15 O -0.525 6.525 16 C -0.151 4.151 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.144 3.856 27 N -0.541 5.541 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.346 0.654 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.402 0.598 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.182 -0.711 21.826 30.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.139 3.861 4 C -0.209 4.209 5 C -0.043 4.043 6 C -0.176 4.176 7 C -0.021 4.021 8 N -0.310 5.310 9 C -0.039 4.039 10 H 0.104 0.896 11 C -0.240 4.240 12 C 0.009 3.991 13 N -0.379 5.379 14 C 0.316 3.684 15 O -0.400 6.400 16 C -0.302 4.302 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.200 1.200 26 C -0.012 4.012 27 N -0.264 5.264 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.165 0.835 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.237 0.763 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.476 0.080 20.152 29.450 hybrid contribution 0.652 -1.582 1.570 2.322 sum -20.824 -1.503 21.721 30.128 Atomic orbital electron populations 1.22855 0.77193 1.02983 1.02421 1.86249 1.22961 1.24624 1.87735 1.19886 0.89507 0.84651 0.92016 1.21139 0.91982 0.99858 1.07926 1.21348 1.00825 0.90446 0.91655 1.20587 0.94425 0.96264 1.06291 1.20742 1.00130 0.90985 0.90206 1.60591 1.32291 1.25581 1.12555 1.21851 0.96129 0.87376 0.98495 0.89597 1.22417 0.99257 1.00222 1.02079 1.21225 0.91212 0.90667 0.96012 1.45767 1.39359 1.29214 1.23517 1.20275 0.80796 0.86451 0.80922 1.90691 1.68228 1.39702 1.41412 1.23504 1.00245 0.99263 1.07166 1.85378 1.44125 1.36510 1.17522 1.22834 1.24097 1.11990 1.09346 0.91024 1.24991 0.96801 0.97277 0.94564 1.70013 1.35923 1.36125 1.08302 0.86233 0.79917 0.81738 0.77655 1.19946 1.20856 1.19975 1.22245 0.92186 0.93592 0.93181 1.67300 1.40894 0.98765 1.19484 0.92380 0.92244 0.88616 0.83944 0.83745 0.89785 0.93989 0.83497 0.91372 0.91906 0.92328 0.91868 0.91443 0.76317 0.89449 0.89325 0.92189 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.33 16 2 O -0.31 -3.09 10.48 -18.71 -0.20 -3.28 16 3 C 0.32 3.26 7.49 -17.12 -0.13 3.13 16 4 C -0.19 -1.69 10.04 -39.28 -0.39 -2.08 16 5 C -0.02 -0.13 9.85 -39.31 -0.39 -0.52 16 6 C -0.17 -1.24 5.41 -104.47 -0.57 -1.80 16 7 C 0.11 0.61 5.63 -4.98 -0.03 0.58 16 8 N -0.68 -4.67 5.68 -107.99 -0.61 -5.29 16 9 C 0.07 0.50 2.75 -67.72 -0.19 0.32 16 10 H 0.09 0.56 7.80 -51.93 -0.41 0.16 16 11 C -0.18 -1.01 9.16 37.15 0.34 -0.67 16 12 C 0.13 1.49 5.37 -4.04 -0.02 1.46 16 13 N -0.72 -9.76 5.39 -60.29 -0.32 -10.08 16 14 C 0.53 10.10 7.85 -10.99 -0.09 10.01 16 15 O -0.53 -12.19 15.86 5.56 0.09 -12.11 16 16 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 18 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 26 C 0.14 1.12 10.85 -17.56 -0.19 0.93 16 27 N -0.54 -5.35 9.22 -13.33 -0.12 -5.47 16 28 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 29 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 33 H 0.08 0.44 8.01 -51.93 -0.42 0.03 16 34 H 0.04 0.19 7.38 -51.93 -0.38 -0.19 16 35 H 0.35 2.42 8.46 -39.29 -0.33 2.09 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 38 H 0.06 0.27 7.45 -51.93 -0.39 -0.11 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.40 4.53 8.14 -40.82 -0.33 4.20 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 397.94 15.07 6.00 6.00 Total: -1.00 -36.13 397.94 -8.72 -44.85 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.87 Total: 1.75 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.18 Total: -3.31 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.33 Total: -46.57 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.11 Total: -15.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.13 -8.72 -44.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266923808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.114 kcal (2) G-P(sol) polarization free energy of solvation -36.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds