Wall clock time and date at job start Sat Apr 11 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35677 * 117.00122 * 2 1 4 4 C 1.38916 * 119.68642 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.11268 * 179.97438 * 4 3 2 6 6 C 1.38828 * 118.48382 * 0.27787 * 5 4 3 7 7 C 1.50704 * 120.35369 * 179.70098 * 6 5 4 8 8 N 1.46896 * 109.47119 * 89.99570 * 7 6 5 9 9 C 1.46896 * 110.99797 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47670 * 324.99891 * 9 8 7 11 11 C 1.53004 * 109.47074 * 85.00055 * 9 8 7 12 12 C 1.53007 * 109.47294 * 204.99835 * 9 8 7 13 13 N 1.46495 * 109.47018 * 55.00182 * 12 9 8 14 14 C 1.34770 * 120.00359 * 180.02562 * 13 12 9 15 15 O 1.21282 * 119.99868 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00524 * 179.97438 * 14 13 12 17 17 S 1.80991 * 109.47273 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00040 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99767 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00128 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00374 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00162 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47255 * 89.99870 * 22 20 18 24 24 H 1.48500 * 109.47357 * 210.00223 * 22 20 18 25 25 H 1.48503 * 109.47126 * 330.00099 * 22 20 18 26 26 C 1.38046 * 119.28869 * 359.44678 * 6 5 4 27 27 N 1.31965 * 120.83742 * 0.56348 * 26 6 5 28 28 H 1.08998 * 109.46871 * 300.00319 * 1 2 3 29 29 H 1.09000 * 109.47238 * 59.99755 * 1 2 3 30 30 H 1.09000 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.44069 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.75464 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.46730 * 209.99594 * 7 6 5 34 34 H 1.08995 * 109.46953 * 329.99534 * 7 6 5 35 35 H 1.00900 * 110.99855 * 303.95223 * 8 7 6 36 36 H 1.08997 * 109.47508 * 59.99990 * 11 9 8 37 37 H 1.09005 * 109.47242 * 180.02562 * 11 9 8 38 38 H 1.08996 * 109.46950 * 299.99535 * 11 9 8 39 39 H 1.08998 * 109.46924 * 175.00004 * 12 9 8 40 40 H 1.08999 * 109.46905 * 295.00488 * 12 9 8 41 41 H 0.97007 * 120.00037 * 359.97438 * 13 12 9 42 42 H 1.08998 * 109.47128 * 300.00037 * 16 14 13 43 43 H 1.09007 * 109.46598 * 59.99776 * 16 14 13 44 44 H 0.96997 * 120.00406 * 179.97438 * 21 20 18 45 45 H 1.08002 * 119.58163 * 180.28217 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 3.2505 3.6491 0.0049 7 6 3.8768 5.0198 0.0113 8 7 4.0798 5.4719 -1.3715 9 6 4.6896 6.8080 -1.4044 10 1 4.3137 7.3996 -0.5696 11 6 6.2100 6.6776 -1.2933 12 6 4.3319 7.4996 -2.7215 13 7 2.8761 7.5178 -2.8839 14 6 2.3271 8.0802 -3.9787 15 8 3.0383 8.5716 -4.8293 16 6 0.8295 8.0984 -4.1460 17 16 0.4064 8.9167 -5.7040 18 6 -1.3507 8.8006 -5.6433 19 1 -1.8317 8.3252 -4.8012 20 6 -2.1167 9.3202 -6.6775 21 7 -3.4294 9.2331 -6.6324 22 14 -1.2849 10.1432 -8.1336 23 1 -1.0054 9.1294 -9.1821 24 1 -2.1784 11.1930 -8.6858 25 1 -0.0095 10.7616 -7.6905 26 6 1.8771 3.5097 -0.0005 27 7 1.3186 2.3141 -0.0001 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0228 0.3695 -0.0005 32 1 5.1254 2.5946 -0.0011 33 1 3.2185 5.7176 0.5288 34 1 4.8375 4.9779 0.5246 35 1 4.6343 4.8082 -1.8912 36 1 6.5859 6.0860 -2.1280 37 1 6.6624 7.6690 -1.3172 38 1 6.4648 6.1849 -0.3550 39 1 4.7089 8.5223 -2.7089 40 1 4.7833 6.9561 -3.5515 41 1 2.3072 7.1244 -2.2037 42 1 0.4528 7.0757 -4.1584 43 1 0.3778 8.6420 -3.3161 44 1 -3.9647 9.5965 -7.3550 45 1 1.2518 4.3902 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266923809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:28 Heat of formation + Delta-G solvation = -41.517362 kcal Electronic energy + Delta-G solvation = -25820.178375 eV Core-core repulsion = 21964.221132 eV Total energy + Delta-G solvation = -3855.957243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98404 -39.33632 -38.52595 -37.44433 -34.33439 -32.96996 -32.39365 -32.19402 -30.06206 -29.26415 -27.67064 -26.10178 -25.54194 -25.08244 -23.82413 -22.07857 -21.33593 -20.23134 -18.73495 -17.81734 -17.46136 -16.70277 -16.35874 -16.24527 -16.09516 -15.56209 -15.08534 -14.92010 -14.85156 -14.78878 -14.31712 -13.97640 -13.87202 -13.68775 -13.42844 -13.20158 -12.97091 -12.86691 -12.75988 -12.71126 -12.27543 -12.16537 -11.89916 -11.60224 -11.45017 -11.24278 -11.20736 -10.96964 -10.54331 -10.27163 -9.95753 -9.81461 -9.41984 -8.96450 -8.93953 -8.77622 -8.69755 -8.43724 -6.85761 -6.24552 -3.95412 0.79385 0.88448 2.77267 2.85461 3.11119 3.32272 3.36191 3.41758 3.54270 3.73312 3.89145 4.01144 4.36537 4.37514 4.43571 4.54342 4.58825 4.67483 4.79152 4.84053 4.88875 4.97324 5.03964 5.04898 5.14540 5.17487 5.27417 5.31408 5.35707 5.41200 5.48252 5.54679 5.61541 5.68286 5.82174 5.87131 5.87985 6.06395 6.11272 6.52253 6.69570 6.89011 6.95235 7.53065 7.82274 7.98775 8.46598 8.64530 9.21909 10.84795 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.002433 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.582095 B =11505.936607 C =13959.664119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.311 6.311 3 C 0.320 3.680 4 C -0.192 4.192 5 C -0.035 4.035 6 C -0.176 4.176 7 C 0.109 3.891 8 N -0.679 5.679 9 C 0.071 3.929 10 H 0.087 0.913 11 C -0.180 4.180 12 C 0.134 3.866 13 N -0.722 5.722 14 C 0.529 3.471 15 O -0.527 6.527 16 C -0.122 4.122 17 S -0.144 6.144 18 C -0.519 4.519 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.882 5.882 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.166 3.834 27 N -0.538 5.538 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.346 0.654 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.404 0.596 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.270 0.730 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.860 -15.136 19.710 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.217 6.217 3 C 0.141 3.859 4 C -0.213 4.213 5 C -0.061 4.061 6 C -0.178 4.178 7 C -0.020 4.020 8 N -0.311 5.311 9 C -0.039 4.039 10 H 0.105 0.895 11 C -0.240 4.240 12 C 0.009 3.991 13 N -0.376 5.376 14 C 0.314 3.686 15 O -0.403 6.403 16 C -0.273 4.273 17 S 0.082 5.918 18 C -0.667 4.667 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.519 5.519 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C 0.009 3.991 27 N -0.261 5.261 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.165 0.835 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.239 0.761 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 17.411 -14.400 18.145 28.979 hybrid contribution 0.489 -0.571 0.855 1.138 sum 17.901 -14.971 19.000 30.093 Atomic orbital electron populations 1.22890 0.76890 1.03032 1.02765 1.86225 1.23212 1.24634 1.87672 1.19910 0.89444 0.84845 0.91698 1.21020 0.92066 0.99482 1.08712 1.21286 1.00224 0.90959 0.93645 1.20580 0.94958 0.95684 1.06611 1.20738 0.99006 0.92121 0.90155 1.60575 1.54236 1.03619 1.12624 1.21853 0.92919 0.90630 0.98476 0.89511 1.22416 0.96278 1.03180 1.02084 1.21237 0.81814 0.99879 0.96154 1.45728 1.07036 1.61178 1.23675 1.20248 0.90116 0.77168 0.81029 1.90687 1.63118 1.44981 1.41500 1.23256 0.94005 1.05482 1.04516 1.84758 1.08248 1.75608 1.23169 1.22331 0.88391 1.44748 1.11216 0.89413 1.24716 0.94286 0.94613 0.97751 1.69941 1.04100 1.44558 1.33272 0.86732 0.81440 0.80475 0.83184 1.19246 1.20016 1.15906 1.22360 0.92210 0.93586 0.90934 1.67397 1.40854 0.98820 1.19040 0.92227 0.91963 0.88592 0.84217 0.84486 0.89681 0.94047 0.83502 0.91932 0.91379 0.92321 0.91395 0.91835 0.76116 0.88579 0.88649 0.91998 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.14 10.48 -18.73 -0.20 -3.34 16 3 C 0.32 3.30 7.49 -17.12 -0.13 3.17 16 4 C -0.19 -1.55 10.04 -39.28 -0.39 -1.95 16 5 C -0.04 -0.23 9.85 -39.31 -0.39 -0.62 16 6 C -0.18 -1.24 5.41 -104.47 -0.57 -1.80 16 7 C 0.11 0.59 5.63 -4.98 -0.03 0.56 16 8 N -0.68 -4.42 5.68 -107.99 -0.61 -5.04 16 9 C 0.07 0.47 2.75 -67.71 -0.19 0.28 16 10 H 0.09 0.53 7.80 -51.93 -0.40 0.13 16 11 C -0.18 -0.94 9.16 37.16 0.34 -0.60 16 12 C 0.13 1.40 5.37 -4.04 -0.02 1.38 16 13 N -0.72 -9.24 5.39 -60.29 -0.32 -9.56 16 14 C 0.53 9.58 7.85 -10.99 -0.09 9.49 16 15 O -0.53 -11.60 15.86 5.56 0.09 -11.51 16 16 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 17 S -0.14 -3.73 18.55 -107.50 -1.99 -5.72 16 18 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 19 H 0.09 2.68 8.03 -52.49 -0.42 2.25 16 20 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.97 13.97 55.49 0.78 -26.19 16 22 Si 0.86 22.11 27.74 -169.99 -4.71 17.39 16 23 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 26 C 0.17 1.47 10.85 -17.56 -0.19 1.28 16 27 N -0.54 -5.81 9.22 -13.33 -0.12 -5.93 16 28 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.08 0.43 8.01 -51.93 -0.42 0.01 16 34 H 0.04 0.18 7.39 -51.93 -0.38 -0.20 16 35 H 0.35 2.26 8.47 -39.29 -0.33 1.93 16 36 H 0.06 0.34 8.13 -51.93 -0.42 -0.09 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.25 7.45 -51.93 -0.39 -0.13 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.40 4.34 8.14 -40.82 -0.33 4.01 16 42 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 43 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 44 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -35.91 395.26 -8.21 -44.12 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.90 Total: 1.63 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.16 Total: -1.81 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.29 Total: -46.72 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.11 Total: -14.85 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.91 -8.21 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266923809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.606 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds