Wall clock time and date at job start Sat Apr 11 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47273 * 2 1 4 4 C 1.53001 * 109.47151 * 240.00580 * 2 1 3 5 5 N 1.46904 * 109.47008 * 184.99954 * 4 2 1 6 6 C 1.46906 * 110.99918 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47048 * 179.97438 * 6 5 4 8 8 C 1.35451 * 126.77253 * 90.00354 * 7 6 5 9 9 C 1.41378 * 103.98546 * 179.97438 * 8 7 6 10 10 C 1.50708 * 126.80201 * 180.02562 * 9 8 7 11 11 C 1.52999 * 117.49801 * 343.73197 * 10 9 8 12 12 C 1.53002 * 117.49813 * 275.07198 * 10 9 8 13 13 N 1.30171 * 106.39621 * 0.02562 * 9 8 7 14 14 O 1.20923 * 111.60389 * 359.97438 * 13 9 8 15 15 N 1.46495 * 109.47246 * 120.00131 * 2 1 3 16 16 C 1.34776 * 120.00095 * 274.99944 * 15 2 1 17 17 O 1.21278 * 119.99851 * 0.02562 * 16 15 2 18 18 C 1.50697 * 120.00007 * 179.97438 * 16 15 2 19 19 S 1.80997 * 109.47132 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00153 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99841 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00072 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99992 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99982 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47262 * 60.00018 * 24 22 20 26 26 H 1.48504 * 109.47113 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.46995 * 299.99827 * 24 22 20 28 28 H 1.09007 * 109.47486 * 59.99808 * 1 2 3 29 29 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47277 * 299.99647 * 1 2 3 31 31 H 1.08995 * 109.47972 * 64.99555 * 4 2 1 32 32 H 1.09002 * 109.46834 * 304.99383 * 4 2 1 33 33 H 1.00901 * 110.99935 * 56.04371 * 5 4 2 34 34 H 1.09002 * 109.46757 * 59.99897 * 6 5 4 35 35 H 1.08999 * 109.47452 * 300.00495 * 6 5 4 36 36 H 1.08005 * 128.00874 * 0.02562 * 8 7 6 37 37 H 1.08999 * 115.54934 * 129.40665 * 10 9 8 38 38 H 1.08998 * 117.49696 * 359.97438 * 11 10 9 39 39 H 1.08997 * 117.49815 * 145.02199 * 11 10 9 40 40 H 1.08996 * 117.50049 * 214.98522 * 12 10 9 41 41 H 1.08998 * 117.49849 * 359.97438 * 12 10 9 42 42 H 0.97006 * 119.99731 * 94.99877 * 15 2 1 43 43 H 1.08995 * 109.47698 * 300.00641 * 18 16 15 44 44 H 1.09005 * 109.46853 * 60.00583 * 18 16 15 45 45 H 0.97002 * 119.99936 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5040 -0.8265 -1.1905 6 6 4.0303 -1.5157 -2.3763 7 6 5.5316 -1.6041 -2.2809 8 6 6.2508 -2.6033 -1.7160 9 6 7.5941 -2.1998 -1.8932 10 6 8.8267 -2.9456 -1.4505 11 6 8.6452 -4.0606 -0.4186 12 6 9.2986 -2.7380 -0.0099 13 7 7.5555 -1.0566 -2.5144 14 8 6.4189 -0.7097 -2.7384 15 7 2.0183 -0.6906 1.1961 16 6 2.1470 -0.0183 2.3571 17 8 1.8582 1.1583 2.4117 18 6 2.6488 -0.7289 3.5876 19 16 2.7092 0.4339 4.9733 20 6 3.3125 -0.6313 6.2406 21 1 3.5219 -1.6677 6.0206 22 6 3.5178 -0.1386 7.5219 23 7 3.2622 1.1244 7.7902 24 14 4.1567 -1.2681 8.8656 25 1 5.4837 -1.8055 8.4710 26 1 4.2880 -0.5050 10.1328 27 1 3.2059 -2.3918 9.0613 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7516 -0.1583 -2.1370 32 1 1.6054 -1.7197 -1.2952 33 1 3.7995 -1.2883 -0.3434 34 1 3.7557 -0.9585 -3.2720 35 1 3.6095 -2.5197 -2.4298 36 1 5.8831 -3.5009 -1.2409 37 1 9.5907 -3.0867 -2.2149 38 1 7.6344 -4.2545 -0.0597 39 1 9.2900 -4.9352 -0.5041 40 1 10.3730 -2.7430 0.1734 41 1 8.7179 -2.0618 0.6174 42 1 2.2490 -1.6318 1.1525 43 1 1.9761 -1.5507 3.8325 44 1 3.6480 -1.1213 3.3984 45 1 3.4060 1.4688 8.6855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268638015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:31 Heat of formation + Delta-G solvation = 48.092365 kcal Electronic energy + Delta-G solvation = -26039.744565 eV Core-core repulsion = 22187.673092 eV Total energy + Delta-G solvation = -3852.071473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.17049 -39.52059 -37.88051 -37.35037 -34.97831 -33.45860 -32.43265 -32.22095 -31.13505 -28.56993 -27.25691 -25.48596 -24.93712 -24.29660 -23.00796 -22.29560 -21.67099 -20.32305 -20.07470 -18.02496 -17.82712 -17.56894 -16.61328 -16.32736 -16.04317 -15.67455 -15.34964 -14.87526 -14.80827 -14.72114 -14.56789 -14.19137 -14.07465 -13.27259 -13.21617 -12.85481 -12.64584 -12.54282 -12.47812 -12.23955 -11.99595 -11.92604 -11.81228 -11.66869 -11.38397 -11.09318 -11.04685 -11.03907 -10.76970 -10.76528 -10.05765 -9.82650 -9.72745 -9.38146 -9.06893 -8.98278 -8.87113 -8.23806 -6.49796 -6.21631 -3.92230 1.14650 1.89098 2.77062 3.01828 3.10483 3.22845 3.27009 3.30097 3.30992 3.65080 3.74280 3.81875 4.18310 4.20296 4.44859 4.52396 4.55845 4.68036 4.73606 4.84638 4.88026 4.91744 5.12701 5.13457 5.17344 5.19547 5.26555 5.32590 5.36063 5.37347 5.48627 5.56806 5.65655 5.66482 5.72798 5.75535 5.87413 6.03226 6.10414 6.12544 6.44167 6.64094 6.84786 7.58610 7.67192 8.03980 8.34514 8.62238 9.23432 10.85725 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007950 B = 0.002848 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3521.220264 B = 9830.280196 C =12745.068916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.098 0.902 4 C 0.054 3.946 5 N -0.684 5.684 6 C 0.138 3.862 7 C -0.022 4.022 8 C -0.223 4.223 9 C 0.048 3.952 10 C -0.090 4.090 11 C -0.162 4.162 12 C -0.161 4.161 13 N -0.358 5.358 14 O 0.112 5.888 15 N -0.736 5.736 16 C 0.535 3.465 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.349 0.651 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.169 0.831 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.392 0.608 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 -12.590 -23.383 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.075 4.075 5 N -0.317 5.317 6 C 0.008 3.992 7 C -0.086 4.086 8 C -0.245 4.245 9 C -0.111 4.111 10 C -0.109 4.109 11 C -0.200 4.200 12 C -0.199 4.199 13 N -0.059 5.059 14 O 0.044 5.956 15 N -0.390 5.390 16 C 0.321 3.679 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.169 0.831 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.187 0.813 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.225 0.775 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.398 -8.957 -23.863 25.714 hybrid contribution 0.241 -4.151 1.335 4.367 sum 3.639 -13.107 -22.528 26.316 Atomic orbital electron populations 1.22163 0.94987 1.02020 1.03017 1.20929 0.93714 0.98488 0.82957 0.88422 1.22320 0.86442 0.99644 0.99069 1.60357 1.10464 1.56628 1.04278 1.20318 0.83795 0.98941 0.96099 1.24245 0.94680 0.89959 0.99751 1.22367 0.91947 1.02828 1.07353 1.22618 0.95149 0.92898 1.00398 1.20109 0.95114 1.01916 0.93733 1.23034 1.02963 0.92633 1.01333 1.23063 1.01709 0.99844 0.95313 1.73845 0.99568 1.14682 1.17846 1.84865 1.10322 1.41006 1.59387 1.46053 1.69694 1.13474 1.09814 1.20253 0.76765 0.87211 0.83660 1.90705 1.47980 1.15683 1.84289 1.23534 1.03533 1.04862 0.98539 1.85417 1.86261 1.12837 0.98657 1.22824 1.51163 0.98115 0.96414 0.91042 1.24984 0.95085 0.95525 0.97933 1.70007 1.45414 1.13219 1.21609 0.86238 0.79309 0.80031 0.80006 1.19938 1.20790 1.19957 0.91719 0.92671 0.91282 0.89081 0.94280 0.83112 0.88265 0.91518 0.81305 0.86060 0.88220 0.87801 0.87806 0.88161 0.77493 0.89380 0.89378 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.15 0.35 -1.23 16 2 C 0.14 1.52 2.88 -67.94 -0.20 1.32 16 3 H 0.10 1.32 7.58 -51.93 -0.39 0.92 16 4 C 0.05 0.38 5.30 -3.82 -0.02 0.36 16 5 N -0.68 -5.61 6.48 -115.05 -0.75 -6.35 16 6 C 0.14 0.88 6.25 -4.97 -0.03 0.85 16 7 C -0.02 -0.20 7.00 -35.31 -0.25 -0.45 16 8 C -0.22 -1.97 10.40 -39.38 -0.41 -2.37 16 9 C 0.05 0.51 6.95 -82.10 -0.57 -0.06 16 10 C -0.09 -0.78 6.33 -91.77 -0.58 -1.36 16 11 C -0.16 -1.11 10.05 -26.69 -0.27 -1.38 16 12 C -0.16 -1.34 10.24 -26.69 -0.27 -1.61 16 13 N -0.36 -4.61 12.07 33.42 0.40 -4.21 16 14 O 0.11 1.34 11.20 17.19 0.19 1.53 16 15 N -0.74 -8.88 4.36 -53.81 -0.23 -9.11 16 16 C 0.54 9.58 7.81 -10.99 -0.09 9.49 16 17 O -0.51 -11.39 15.52 5.56 0.09 -11.30 16 18 C -0.15 -3.03 6.16 36.00 0.22 -2.80 16 19 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 20 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.35 2.99 7.57 -39.29 -0.30 2.69 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.17 1.06 7.63 -52.48 -0.40 0.65 16 37 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.10 0.65 7.34 -51.93 -0.38 0.27 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.39 3.53 8.15 -40.82 -0.33 3.20 16 43 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 44 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -35.85 398.37 -9.55 -45.40 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.85 Total: 3.12 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.91 Total: -12.15 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.16 Total: -45.09 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.28 Total: -9.77 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.85 -9.55 -45.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268638015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.492 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds