Wall clock time and date at job start Sat Apr 11 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 N 1.46899 * 109.47160 * 185.00225 * 4 2 1 6 6 C 1.46903 * 110.99701 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.46739 * 179.97438 * 6 5 4 8 8 O 1.21292 * 120.00208 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99725 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99708 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00019 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99677 * 179.97438 * 10 9 7 13 13 N 1.31415 * 119.99770 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00197 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47501 * 89.99557 * 14 12 10 16 16 H 1.48505 * 109.47474 * 209.99779 * 14 12 10 17 17 H 1.48500 * 109.47184 * 329.99702 * 14 12 10 18 18 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 19 19 C 1.34777 * 120.00199 * 275.00460 * 18 2 1 20 20 O 1.21283 * 119.99750 * 359.97438 * 19 18 2 21 21 C 1.50702 * 119.99928 * 180.27479 * 19 18 2 22 22 C 1.52996 * 109.47159 * 179.72352 * 21 19 18 23 23 C 1.50697 * 109.47491 * 179.97438 * 22 21 19 24 24 C 1.38420 * 122.54283 * 89.99202 * 23 22 21 25 25 C 1.33384 * 114.92339 * 179.97438 * 24 23 22 26 26 S 1.75885 * 109.59452 * 0.02562 * 25 24 23 27 27 C 1.33389 * 122.53894 * 269.71096 * 23 22 21 28 28 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 30 30 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 31 31 H 1.09006 * 109.46830 * 304.99500 * 4 2 1 32 32 H 1.08994 * 109.47535 * 64.99592 * 4 2 1 33 33 H 1.00902 * 110.99980 * 303.94869 * 5 4 2 34 34 H 1.08993 * 109.47400 * 299.99506 * 6 5 4 35 35 H 1.08996 * 109.47529 * 60.00008 * 6 5 4 36 36 H 0.97000 * 119.99733 * 359.97438 * 9 7 6 37 37 H 0.97001 * 119.99662 * 180.02562 * 13 12 10 38 38 H 0.97000 * 119.99484 * 94.99557 * 18 2 1 39 39 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 40 40 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 41 41 H 1.09004 * 109.47066 * 299.99797 * 22 21 19 42 42 H 1.09000 * 109.47234 * 59.99288 * 22 21 19 43 43 H 1.08000 * 122.53626 * 0.02562 * 24 23 22 44 44 H 1.08002 * 125.20036 * 180.02562 * 25 24 23 45 45 H 1.08001 * 125.20079 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.0302 -1.5158 -2.3762 7 6 5.5317 -1.6042 -2.2807 8 8 6.1067 -1.1394 -1.3193 9 7 6.2354 -2.1999 -3.2638 10 6 7.6012 -2.2809 -3.1767 11 1 8.1132 -1.8670 -2.3206 12 6 8.3268 -2.8954 -4.1899 13 7 9.6360 -2.9726 -4.1067 14 14 7.4413 -3.6107 -5.6710 15 1 7.3221 -2.5721 -6.7257 16 1 8.2118 -4.7655 -6.1984 17 1 6.0860 -4.0631 -5.2665 18 7 2.0183 -0.6906 1.1962 19 6 2.1470 -0.0182 2.3572 20 8 1.8589 1.1586 2.4115 21 6 2.6553 -0.7271 3.5861 22 6 2.7119 0.2573 4.7559 23 6 3.2196 -0.4517 5.9850 24 6 4.5651 -0.5207 6.3024 25 6 4.8445 -1.1848 7.4249 26 16 3.3533 -1.7714 8.1499 27 6 2.4059 -1.0556 6.8524 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1370 33 1 3.9280 0.0826 -1.0823 34 1 3.6095 -2.5198 -2.4296 35 1 3.7557 -0.9587 -3.2720 36 1 5.7755 -2.5719 -4.0325 37 1 10.1425 -3.4013 -4.8142 38 1 2.2490 -1.6317 1.1526 39 1 1.9840 -1.5491 3.8351 40 1 3.6536 -1.1193 3.3925 41 1 3.3832 1.0792 4.5069 42 1 1.7135 0.6495 4.9494 43 1 5.3307 -0.0702 5.6881 44 1 5.8350 -1.3388 7.8270 45 1 1.3300 -1.1002 6.7694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268649166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:33 Heat of formation + Delta-G solvation = -45.434698 kcal Electronic energy + Delta-G solvation = -25860.508290 eV Core-core repulsion = 22004.381179 eV Total energy + Delta-G solvation = -3856.127111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.96919 -38.62026 -38.39164 -36.74035 -34.35774 -33.73029 -33.04599 -31.69293 -31.05299 -29.22052 -27.78843 -25.68418 -24.98310 -23.22333 -22.78114 -21.26539 -20.32604 -19.40576 -18.90836 -18.38441 -17.87247 -17.06590 -16.71011 -15.89195 -15.71216 -15.29465 -15.17018 -14.90774 -14.50458 -14.13383 -14.06186 -13.62553 -13.36254 -13.32768 -13.19919 -13.13064 -12.78183 -12.71711 -12.36011 -12.26820 -12.15064 -12.07233 -11.98805 -11.73296 -11.70445 -11.19059 -11.16853 -11.00701 -10.91951 -10.62402 -10.00302 -9.83749 -9.60137 -9.04992 -9.01898 -8.63993 -8.58544 -8.25123 -8.19275 -6.33649 -3.85234 0.78785 1.44920 1.76642 2.46563 2.68739 2.99763 3.04062 3.12667 3.21965 3.70721 3.99687 4.07887 4.59134 4.67798 4.72144 4.80517 4.90962 4.93348 5.03511 5.07600 5.17139 5.22701 5.32569 5.34895 5.36118 5.45506 5.49663 5.54919 5.58030 5.65132 5.75767 5.85622 5.87784 5.88299 5.95592 6.00869 6.22116 6.32216 6.50529 6.99270 7.47473 7.55244 7.56702 8.11687 8.27481 8.56857 8.92292 9.39571 9.79578 10.79448 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010586 B = 0.002118 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.483155 B =13218.575467 C =15378.072032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.564 6.564 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.270 1.270 18 N -0.709 5.709 19 C 0.516 3.484 20 O -0.551 6.551 21 C -0.135 4.135 22 C -0.044 4.044 23 C -0.097 4.097 24 C -0.129 4.129 25 C -0.209 4.209 26 S 0.081 5.919 27 C -0.212 4.212 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.353 0.647 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.406 0.594 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.144 0.856 44 H 0.164 0.836 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.840 1.528 15.550 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.299 5.299 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.446 6.446 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.360 5.360 19 C 0.303 3.697 20 O -0.429 6.429 21 C -0.175 4.175 22 C -0.084 4.084 23 C -0.109 4.109 24 C -0.159 4.159 25 C -0.344 4.344 26 S 0.344 5.656 27 C -0.348 4.348 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.172 0.828 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.241 0.759 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.161 0.839 44 H 0.182 0.818 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.773 1.201 17.847 26.664 hybrid contribution -0.090 0.209 -3.332 3.340 sum -19.863 1.410 14.515 24.641 Atomic orbital electron populations 1.22135 0.95074 1.02149 1.02587 1.20914 0.93524 0.97524 0.84130 0.89602 1.22318 0.89343 1.00711 0.95847 1.60048 1.03195 1.27037 1.39653 1.21713 0.95066 1.00024 0.91690 1.19702 0.87929 0.84193 0.84722 1.90573 1.70986 1.50479 1.32516 1.42210 1.07865 1.52960 1.19955 1.19428 0.79507 1.36021 1.08436 0.86292 1.25049 0.95455 0.97639 0.98068 1.69625 1.05075 1.43358 1.34012 0.86663 0.79573 0.79798 0.83285 1.19664 1.20156 1.19505 1.45855 1.66745 1.14461 1.08916 1.20621 0.77099 0.87231 0.84730 1.90682 1.50807 1.16088 1.85340 1.21637 1.03792 0.99465 0.92640 1.20036 1.02526 0.96600 0.89223 1.19001 0.92877 1.00945 0.98111 1.20211 0.96449 1.01610 0.97626 1.25618 1.01667 1.06207 1.00947 1.84258 0.98305 1.55673 1.27352 1.25470 1.03359 1.06651 0.99295 0.92376 0.91889 0.91699 0.90469 0.93921 0.82781 0.89479 0.93733 0.79710 0.91594 0.75943 0.89065 0.88250 0.89927 0.90375 0.83878 0.81829 0.81970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 2 C 0.14 1.49 2.81 -67.93 -0.19 1.30 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 C 0.05 0.49 5.24 -3.83 -0.02 0.47 16 5 N -0.67 -9.41 5.85 -115.06 -0.67 -10.09 16 6 C 0.05 0.74 6.17 -4.97 -0.03 0.71 16 7 C 0.45 9.88 7.82 -10.98 -0.09 9.80 16 8 O -0.56 -14.83 15.78 5.55 0.09 -14.74 16 9 N -0.59 -13.78 5.09 -10.96 -0.06 -13.83 16 10 C -0.31 -8.54 10.16 -14.93 -0.15 -8.70 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 12 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 14 Si 0.88 19.10 27.74 -169.99 -4.71 14.38 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 18 N -0.71 -7.47 4.80 -53.81 -0.26 -7.73 16 19 C 0.52 6.13 7.79 -10.98 -0.09 6.04 16 20 O -0.55 -8.38 15.64 5.55 0.09 -8.29 16 21 C -0.14 -1.26 5.68 -27.88 -0.16 -1.42 16 22 C -0.04 -0.42 4.76 -27.89 -0.13 -0.55 16 23 C -0.10 -0.91 5.06 -106.25 -0.54 -1.45 16 24 C -0.13 -1.21 9.98 -41.21 -0.41 -1.63 16 25 C -0.21 -1.80 11.23 29.04 0.33 -1.48 16 26 S 0.08 0.66 23.34 -107.50 -2.51 -1.85 16 27 C -0.21 -1.81 10.98 29.04 0.32 -1.49 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.35 5.53 8.43 -39.29 -0.33 5.20 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.41 3.83 8.60 -40.82 -0.35 3.48 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 43 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -33.99 395.27 -8.99 -42.98 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -6.78 Total: 16.39 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.90 Total: 1.60 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.21 Total: -56.43 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.38 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.99 -8.99 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268649166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.457 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds