Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46812 * 2 1 4 4 C 1.52997 * 109.47452 * 120.00216 * 2 1 3 5 5 N 1.46896 * 109.47298 * 174.99593 * 4 2 1 6 6 C 1.46898 * 111.00296 * 179.97438 * 5 4 2 7 7 C 1.50693 * 109.47670 * 180.02562 * 6 5 4 8 8 N 1.30256 * 125.62069 * 90.02263 * 7 6 5 9 9 C 1.34478 * 108.70423 * 179.97438 * 8 7 6 10 10 C 1.34327 * 107.66613 * 0.02562 * 9 8 7 11 11 C 1.50701 * 126.44107 * 180.02562 * 10 9 8 12 12 C 1.53005 * 117.49832 * 188.73927 * 11 10 9 13 13 C 1.53004 * 117.49943 * 120.08669 * 11 10 9 14 14 O 1.33971 * 125.61957 * 269.72374 * 7 6 5 15 15 N 1.46506 * 109.46831 * 240.00445 * 2 1 3 16 16 C 1.34774 * 120.00251 * 84.99772 * 15 2 1 17 17 O 1.21282 * 119.99905 * 0.02562 * 16 15 2 18 18 C 1.50696 * 119.99967 * 180.02562 * 16 15 2 19 19 S 1.81007 * 109.47019 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99724 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00304 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99673 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99962 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99808 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47419 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.47049 * 119.99946 * 24 22 20 27 27 H 1.48498 * 109.47265 * 239.99896 * 24 22 20 28 28 H 1.08992 * 109.47061 * 59.99633 * 1 2 3 29 29 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46935 * 299.99658 * 1 2 3 31 31 H 1.09000 * 109.46875 * 295.00133 * 4 2 1 32 32 H 1.09008 * 109.47017 * 54.99755 * 4 2 1 33 33 H 1.00904 * 110.99715 * 56.04927 * 5 4 2 34 34 H 1.09001 * 109.47225 * 300.00751 * 6 5 4 35 35 H 1.09001 * 109.46908 * 60.00373 * 6 5 4 36 36 H 1.07999 * 126.16941 * 180.02562 * 9 8 7 37 37 H 1.08999 * 115.55212 * 334.40872 * 11 10 9 38 38 H 1.09004 * 117.49857 * 0.02562 * 12 11 10 39 39 H 1.09004 * 117.49843 * 145.01663 * 12 11 10 40 40 H 1.09003 * 117.49926 * 214.98410 * 13 11 10 41 41 H 1.09000 * 117.50142 * 359.96980 * 13 11 10 42 42 H 0.97006 * 119.99584 * 264.99701 * 15 2 1 43 43 H 1.09007 * 109.47090 * 299.99748 * 18 16 15 44 44 H 1.08990 * 109.47220 * 59.99884 * 18 16 15 45 45 H 0.97005 * 120.00123 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1903 6 6 4.0306 -1.5149 2.3765 7 6 5.5318 -1.6035 2.2810 8 7 6.3743 -0.7192 2.7339 9 6 7.6241 -1.1384 2.4678 10 6 7.5316 -2.3176 1.8311 11 6 8.6791 -3.1613 1.3385 12 6 8.3426 -4.3678 0.4598 13 6 8.8078 -4.5776 1.9028 14 8 6.2202 -2.6074 1.7214 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0182 -2.3572 17 8 1.8590 1.1587 -2.4115 18 6 2.6487 -0.7287 -3.5878 19 16 2.7104 0.4346 -4.9732 20 6 3.3134 -0.6306 -6.2406 21 1 3.5226 -1.6671 -6.0206 22 6 3.5194 -0.1377 -7.5216 23 7 3.2639 1.1254 -7.7898 24 14 4.1594 -1.2668 -8.8651 25 1 4.3653 -2.6289 -8.3106 26 1 3.1717 -1.3279 -9.9725 27 1 5.4491 -0.7415 -9.3806 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7518 -0.1584 2.1369 32 1 1.6055 -1.7199 1.2951 33 1 3.9281 0.0825 1.0823 34 1 3.7560 -0.9572 3.2719 35 1 3.6098 -2.5190 2.4306 36 1 8.5374 -0.6204 2.7204 37 1 9.6002 -2.6209 1.1201 38 1 7.2913 -4.5510 0.2376 39 1 9.0425 -4.6213 -0.3365 40 1 9.8136 -4.9691 2.0555 41 1 8.0629 -4.8990 2.6307 42 1 2.2490 -1.6318 -1.1527 43 1 3.6479 -1.1213 -3.3988 44 1 1.9758 -1.5504 -3.8326 45 1 3.4075 1.4699 -8.6852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268678142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = 10.239905 kcal Electronic energy + Delta-G solvation = -25956.428318 eV Core-core repulsion = 22102.715439 eV Total energy + Delta-G solvation = -3853.712879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.59903 -39.35887 -37.69137 -37.11041 -35.03434 -34.54659 -32.38975 -31.61234 -30.45802 -28.44902 -27.48319 -25.44415 -24.54162 -23.38191 -22.82687 -22.20224 -21.58063 -20.75203 -20.17661 -17.87181 -17.56129 -17.00775 -16.71370 -16.34249 -16.07786 -15.31387 -15.17748 -15.00094 -14.77132 -14.68261 -14.57404 -14.03347 -13.56989 -13.48564 -13.13433 -12.79572 -12.72167 -12.61318 -12.43389 -12.33676 -12.01623 -11.95388 -11.67620 -11.55558 -11.41391 -11.17333 -11.04649 -10.99565 -10.96943 -10.71786 -10.64064 -9.75800 -9.29711 -9.03873 -9.01521 -8.80235 -8.73793 -8.17138 -6.44378 -6.17921 -3.87400 1.08314 2.23426 2.38110 3.11084 3.21751 3.24088 3.30981 3.36561 3.40918 3.56243 3.78940 3.97382 4.09534 4.24443 4.33314 4.45439 4.52145 4.69577 4.73939 4.88517 4.99128 5.07309 5.17194 5.17877 5.19792 5.23757 5.27663 5.33581 5.41265 5.43521 5.56748 5.59525 5.66375 5.74350 5.76296 5.98209 6.01361 6.02264 6.14511 6.23758 6.44381 6.76282 6.89776 7.46016 7.63908 7.88615 8.39586 8.75383 9.27586 10.89596 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008117 B = 0.002736 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3448.648947 B =10232.978900 C =13004.772670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.086 0.914 4 C 0.053 3.947 5 N -0.683 5.683 6 C 0.157 3.843 7 C 0.193 3.807 8 N -0.476 5.476 9 C -0.037 4.037 10 C -0.009 4.009 11 C -0.083 4.083 12 C -0.165 4.165 13 C -0.165 4.165 14 O -0.190 6.190 15 N -0.721 5.721 16 C 0.534 3.466 17 O -0.524 6.524 18 C -0.152 4.152 19 S -0.062 6.062 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.355 0.645 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.184 0.816 37 H 0.140 0.860 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.401 0.599 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -11.367 25.167 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.076 4.076 5 N -0.316 5.316 6 C 0.028 3.972 7 C -0.014 4.014 8 N -0.206 5.206 9 C -0.176 4.176 10 C -0.063 4.063 11 C -0.101 4.101 12 C -0.202 4.202 13 C -0.202 4.202 14 O -0.076 6.076 15 N -0.375 5.375 16 C 0.320 3.680 17 O -0.398 6.398 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.681 4.681 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.174 0.826 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.201 0.799 37 H 0.157 0.843 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.235 0.765 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.676 -9.316 24.860 26.956 hybrid contribution 1.127 -2.353 -0.473 2.651 sum 5.803 -11.669 24.386 27.650 Atomic orbital electron populations 1.22153 0.94912 1.02199 1.02866 1.20833 0.93890 0.97467 0.83821 0.89571 1.22331 0.86789 1.01471 0.97052 1.60385 1.05813 1.27255 1.38180 1.20176 0.81589 1.01896 0.93560 1.25947 0.96515 0.83299 0.95595 1.70433 1.00343 1.28169 1.21631 1.22957 0.96218 0.95241 1.03157 1.22413 0.81962 0.98047 1.03835 1.20436 0.94431 0.89063 1.06182 1.23079 1.03534 0.99574 0.94049 1.23109 1.03485 0.96249 0.97357 1.84360 1.17445 1.44060 1.61749 1.45864 1.68744 1.14057 1.08816 1.20249 0.76739 0.87161 0.83856 1.90687 1.48776 1.15804 1.84574 1.23511 1.03646 1.04693 0.98385 1.85366 1.86261 1.13073 0.98845 1.22917 1.50686 0.98171 0.96362 0.90938 1.24991 0.95177 0.95523 0.97957 1.70032 1.45754 1.13216 1.21356 0.86129 0.78510 0.80174 0.80750 1.19624 1.20599 1.20592 0.91264 0.92410 0.91945 0.93195 0.89923 0.82612 0.90634 0.88075 0.79933 0.84268 0.87912 0.87493 0.87549 0.88500 0.76526 0.89326 0.89435 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 2 C 0.15 1.61 2.82 -67.93 -0.19 1.41 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 4 C 0.05 0.40 5.24 -3.83 -0.02 0.38 16 5 N -0.68 -6.19 6.22 -115.06 -0.72 -6.91 16 6 C 0.16 1.23 6.31 -4.98 -0.03 1.20 16 7 C 0.19 2.12 7.85 -12.95 -0.10 2.02 16 8 N -0.48 -5.76 11.29 -11.10 -0.13 -5.89 16 9 C -0.04 -0.39 11.80 -17.77 -0.21 -0.60 16 10 C -0.01 -0.09 6.84 -35.69 -0.24 -0.34 16 11 C -0.08 -0.62 6.25 -91.77 -0.57 -1.20 16 12 C -0.17 -1.20 10.18 -26.70 -0.27 -1.47 16 13 C -0.17 -1.01 10.24 -26.70 -0.27 -1.28 16 14 O -0.19 -2.20 10.55 5.35 0.06 -2.14 16 15 N -0.72 -9.69 4.80 -53.80 -0.26 -9.95 16 16 C 0.53 10.10 7.81 -10.99 -0.09 10.02 16 17 O -0.52 -11.94 15.52 5.56 0.09 -11.86 16 18 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 19 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 20 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 21 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 24 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.35 3.72 8.72 -39.29 -0.34 3.38 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.18 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.87 8.00 -51.93 -0.42 0.46 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.40 4.59 8.60 -40.82 -0.35 4.24 16 43 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 401.97 15.07 6.06 6.06 Total: -1.00 -36.44 401.97 -9.60 -46.03 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.97 Total: 4.94 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.23 Total: -7.25 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.37 Total: -48.52 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.14 Total: -14.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.44 -9.60 -46.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268678142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.274 kcal (2) G-P(sol) polarization free energy of solvation -36.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds